Anthropogenic impact on mangrove sediments triggers differential responses in the heavy metals and antibiotic resistomes of microbial communities.

Mangroves are complex and dynamic ecosystems highly dependent on diverse microbial activities. In the last decades, these ecosystems have been exposed to and affected by diverse human activities, such as waste disposal and accidental oil spills. Complex microbial communities inhabiting the soil and sediment of mangroves comprise microorganisms that have developed mechanisms to adapt to organic and inorganic contaminants. The resistance of these microbes to contaminants is an attractive property and also the reason why soil and sediment living microorganisms and their enzymes have been considered promising for environmental detoxification. The aim of the present study was to identify active microbial genes in heavy metals, i.e., Cu, Zn, Cd, Pb and Hg, and antibiotic resistomes of polluted and pristine mangrove sediments through the comparative analysis of metatranscriptome data. The concentration of the heavy metals Zn, Cr, Pb, Cu, Ni, Cd, and Hg and abundance of genes and transcripts involved in resistance to toxic compounds (the cobalt-zinc-cadmium resistance protein complex; the cobalt-zinc-cadmium resistance protein CzcA and the cation efflux system protein CusA) have been closely associated with sites impacted with petroleum, sludge and other urban waste. The taxonomic profiling of metatranscriptome sequences suggests that members of Gammaproteobacteria and Deltaproteobacteria classes contribute to the detoxification of the polluted soil. Desulfobacterium autotrophicum was the most abundant microorganism in the oil-impacted site and displayed specific functions related to heavy metal resistance, potentially playing a key role in the successful persistence of the microbial community of this site.

Variabilidade genética de bactérias diazotróficas associadas a plantas de cana-de-açúcar capazes de solubilizar fosfato inorgânico / Genetic variability of sugarcane-associated diazotrophic bacteria capable of inorganic phosphate solubilizing

A cana-de-açúcar é uma cultura de grande importância agrícola, nacional e mundial, requerendo grandes quantidades de fertilizantes nitrogenados e fosfatados. Além disso, apresenta associação com bactérias que podem promover o desenvolvimento vegetal. O objetivo deste trabalho foi selecionar bactérias diazotróficas, associadas a plantas de cana-de-açúcar, capazes de solubilizar fosfato inorgânico e avaliar a variabilidade genética bacteriana. Para tanto, foram avaliadas 68 linhagens bacterianas diazotróficas, endofíticas de folha e raiz e do rizoplano, de plantas de três variedades de cana-de-açúcar. A seleção de bactérias solubilizadoras de fosfato inorgânico foi realizada em meio sólido suplementado com fosfato insolúvel, sendo avaliado o índice de solubilização. A análise da variabilidade genética foi realizada pela técnica de BOX-PCR. Os resultados revelaram que 74% das linhagens diazotróficas foram capazes de solubilizar fosfato, apresentando índices de solubilização diferentes. Foi observado que o tecido vegetal e a variedade de cana influenciaram a interação entre bactérias diazotróficas solubilizadoras de fosfato e plantas de cana. O BOX-PCR revelou alta variabilidade genética entre as linhagens analisadas. Logo, conclui-se que as bactérias diazotróficas associadas a plantas de cana-deaçúcar avaliadas expressam a capacidade de solubilizar fosfato inorgânico e que algumas bactérias avaliadas pela técnica de BOX-PCR apresentam alta variabilidade genética.

The sugarcane is a culture of great importance for the Brazilian agriculture. Every year this culture consumes great amounts of nitrogen and phosphate fertilizers. However, the use of plant growth-promoting bacteria can reduce the use of the chemical fertilizers, contributing to the economy and the environment conservation. So, the goal of this study was to select sugarcane-associated diazotrophic bacteria able to solubilize inorganic phosphate and to evaluate the genetic diversity of these bacteria. A total of 68 diazotrophic bacteria, leaf and root endophytic and rizoplane, of three sugarcane varieties. The selection of inorganic phosphate solubilizing diazotrophic bacteria was assayed by the solubilization index (SI) in solid medium containing insoluble phosphate. The genetic variability was analyzed by the BOX-PCR technique. The results showed that 74% of the diazotrophic strains were able to solubilize inorganic phosphate, presenting classes of different SI. The results showed that the vegetal tissue and the genotype plant influenced in the interaction between phosphate solubilizing diazotrophic bacteria and sugarcane plants. BOX-PCR revealed high genetic variability among the strains analyzed. So, sugarcane-associated diazotrophic bacteria express the capacity to solubilize inorganic phosphate and they present high genetic diversity.