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1.
Mater Today Bio ; 26: 101073, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38711935

ABSTRACT

Spider silks are natural protein-based biomaterials which are renowned for their mechanical properties and hold great promise for applications ranging from high-performance textiles to regenerative medicine. While some spiders can produce several different types of silks, most spider silk types - including pyriform and aciniform silks - are relatively unstudied. Pyriform and aciniform silks have distinct mechanical behavior and physicochemical properties, with materials produced using combinations of these silks currently unexplored. Here, we introduce an engineered chimeric fusion protein consisting of two repeat units of pyriform (Py) silk followed by two repeat units of aciniform (W) silk named Py2W2. This recombinant ∼86.5 kDa protein is amenable to expression and purification from Escherichia coli and exhibits high α-helicity in a fluorinated acid- and alcohol-based solution used to form a dope for wet-spinning. Wet-spinning enables continuous fiber production and post-spin stretching of the wet-spun fibers in air or following submersion in water or ethanol leads to increases in optical anisotropy, consistent with increased molecular alignment along the fiber axis. Mechanical properties of the fibers vary as a function of post-spin stretching condition, with the highest extensibility and strength observed in air-stretched and ethanol-treated fibers, respectively, with mechanics being superior to fibers spun from either constituent protein alone. Notably, the maximum extensibility obtained (∼157 ± 38 %) is of the same magnitude reported for natural flagelliform silks, the class of spider silk most associated with being stretchable. Interestingly, Py2W2 is also water-compatible, unlike its constituent Py2. Fiber-state secondary structure correlates well with the observed mechanical properties, with depleted α-helicity and increased ß-sheet content in cases of increased strength. Py2W2 fibers thus provide enhanced materials behavior in terms of their mechanics, tunability, and fiber properties, providing new directions for design and development of biomaterials suitable and tunable for disparate applications.

2.
Biomol NMR Assign ; 17(1): 9-16, 2023 06.
Article in English | MEDLINE | ID: mdl-36309626

ABSTRACT

The human MDM2 protein regulates the tumor suppressor protein p53 by restricting its transcriptional activity and by promoting p53 degradation. MDM2 is ubiquitously expressed, with its overexpression implicated in many forms of cancer. The inhibitory effects of MDM2 on p53 have been shown to involve its N-terminal p53-binding domain and its C-terminal RING domain. The presence of an intact central acidic domain of MDM2 has also been shown to regulate p53 ubiquitination, with this domain shown to directly interact with the p53 DNA-binding domain to regulate the DNA binding activity of p53. To date, little structural information has been obtained for the MDM2 acidic domain. Thus, to gain insight into the structure and function relationship of this region, we have applied solution-state NMR spectroscopy to characterize the segment of MDM2 spanning residues 215-300. These boundaries for the acidic domain were determined on the basis of consensus observed in multiple sequence alignment. Here, we report the 1H, 15N and 13C backbone and 13Cß chemical shift assignments and steady-state {1H}-15N heteronuclear NOE enhancement factors as a function of residue for the acidic domain of MDM2. We show that this domain exhibits the hallmarks of being a disordered protein, on the basis both of assigned chemical shifts and residue-level backbone dynamics, with localized variation in secondary structure propensity inferred from chemical shift analysis.


Subject(s)
Proto-Oncogene Proteins c-mdm2 , Tumor Suppressor Protein p53 , Humans , Proto-Oncogene Proteins c-mdm2/genetics , Tumor Suppressor Protein p53/genetics , Nuclear Magnetic Resonance, Biomolecular , Ubiquitination , Protein Binding , DNA/metabolism
3.
J Fungi (Basel) ; 8(8)2022 Aug 12.
Article in English | MEDLINE | ID: mdl-36012834

ABSTRACT

Inteins are genetic mobile elements that are inserted within protein-coding genes, which are usually housekeeping genes. They are transcribed and translated along with the host gene, then catalyze their own splicing out of the host protein, which assumes its functional conformation thereafter. As Prp8 inteins are found in several important fungal pathogens and are absent in mammals, they are considered potential therapeutic targets since inhibiting their splicing would selectively block the maturation of fungal proteins. We developed a target-based drug screening system to evaluate the splicing of Prp8 intein from the yeast pathogen Cryptococcus neoformans (CnePrp8i) using Saccharomyces cerevisiae Ura3 as a non-native host protein. In our heterologous system, intein splicing preserved the full functionality of Ura3. To validate the system for drug screening, we examined cisplatin, which has been described as an intein splicing inhibitor. By using our system, new potential protein splicing inhibitors may be identified and used, in the future, as a new class of drugs for mycosis treatment. Our system also greatly facilitates the visualization of CnePrp8i splicing dynamics in vivo.

4.
Biochim Biophys Acta Mol Cell Res ; 1869(10): 119319, 2022 10.
Article in English | MEDLINE | ID: mdl-35780910

ABSTRACT

The tumor suppressor protein p53 governs many cellular pathways to control genome integrity, metabolic homeostasis, and cell viability. The critical roles of p53 highlight the importance of proper control over p53 in maintaining normal cellular function, with the negative regulators MDM2 and MDMX playing central roles in regulating p53 activity. The interaction between p53 and either MDM2 or MDMX involves the p53 transactivation domain (p53TD) and the N-terminal domains (NTD) of MDM2 or MDMX. Recently, the acidic domain (AD) of MDMX was found to bind to its own NTD, inhibiting the p53-MDMX interaction. Given the established structural and functional similarity between the MDM2 and MDMX NTDs, we hypothesized that the MDMX AD would also directly bind to MDM2 NTD to inhibit p53-MDM2 interaction. Through solution-state nuclear magnetic resonance (NMR) spectroscopy and isothermal titration calorimetry (ITC), we show that the MDMX AD can indeed directly interact with the MDM2 NTD and, as a result, can compete for p53 binding. The MDMX AD is thus able to serve as a regulatory domain to inhibit the MDM2-p53 interaction and may also play a direct role in p53 activation.


Subject(s)
Proto-Oncogene Proteins c-mdm2 , Tumor Suppressor Protein p53 , Nuclear Proteins/genetics , Nuclear Proteins/metabolism , Proto-Oncogene Proteins/genetics , Proto-Oncogene Proteins c-mdm2/genetics , Proto-Oncogene Proteins c-mdm2/metabolism , Transcriptional Activation , Tumor Suppressor Protein p53/genetics , Tumor Suppressor Protein p53/metabolism
5.
Biomol NMR Assign ; 16(1): 171-178, 2022 04.
Article in English | MEDLINE | ID: mdl-35359247

ABSTRACT

The human MDMX protein, also known as MDM4, plays a pivotal role in regulating the activity of the tumor suppressor protein p53 by restricting p53 transcriptional activity and stimulating the E3 ubiquitin ligase activity of another key regulatory protein, MDM2, to promote p53 degradation. MDMX is ubiquitously expressed in most tissue types and overexpression of MDMX has been implicated in many forms of cancer. MDMX has been shown to require an intact N-terminal p53-binding domain and C-terminal RING domain to exert inhibitory effects on p53. The presence of a tryptophan-rich sequence in the central acidic domain of MDMX has also been implicated in regulating the interaction between MDMX and p53, directly interacting with the p53 DNA-binding domain. To date, little structural information has been obtained for this acidic region of MDMX that encompasses the Trp-rich sequence. In order to gain insight into the structure and function of this region, we have carried out solution-state NMR spectroscopy studies utilizing the segment of MDMX spanning residues 181-300-with bounds specifically chosen through multiple sequence alignment-which encompasses nearly 25% of MDMX. Here, we report the 1H, 15N and 13C backbone chemical shift assignments of the acidic domain of MDMX and show that it exhibits hallmarks of intrinsic disorder and localized variation in inferred secondary structure propensity.


Subject(s)
Proto-Oncogene Proteins c-mdm2 , Tumor Suppressor Protein p53 , Cell Cycle Proteins/genetics , Cell Cycle Proteins/metabolism , Humans , Nuclear Magnetic Resonance, Biomolecular , Protein Binding , Proto-Oncogene Proteins/metabolism , Proto-Oncogene Proteins c-mdm2/chemistry , Proto-Oncogene Proteins c-mdm2/genetics , Proto-Oncogene Proteins c-mdm2/metabolism , Tumor Suppressor Protein p53/genetics , Tumor Suppressor Protein p53/metabolism , Ubiquitination
6.
Clin Lab ; 66(5)2020 May 01.
Article in English | MEDLINE | ID: mdl-32390396

ABSTRACT

BACKGROUND: Human papillomavirus (HPV) is the cause of nearly all cervical cancers and the primary cause of anal cancers. Prevalence of HPV varies largely among countries and regions, and population-based data are largely insufficient. The aim of this study is to determine the prevalence and genotype distribution of HPV infection among the women received a general health check. METHODS: In the years 2015, 2016, and 2017, a total of 553,654 individuals received a general health check in the Sichuan Provincial People's Hospital. Among them, 9,182 unselected and asymptomatic individuals received the HPV screening test. Samples of exfoliated endocervical cells were collected and DNA isolation was performed with a Cell Lysis Kit. Fragments of HPV DNA were amplified by PCR. Twenty-one different HPV genotypes, including HPV 6, 11, 16, 18, 31, 33, 35, 39, 42, 43, 44, 45, 51, 52, 53, 56, 58, 59, 66, 68, and CP8304, were detected from PCR products using a GenoArray Diagnostic Hybridization Kit. HPV genotype was read on the colored position on the array. RESULTS: A total of 1,207 individuals were positive for at least one HPV genotype, giving a crude prevalence of 13.2% (95% CI: 12.5 - 13.9%). The prevalence did not differ much among age groups. HPV-positive individuals were 291, 389, and 527 in 2015, 2016, and 2017, respectively. The majority of the HPV-positive participants (960/1,207 = 80%) had one type of virus. Approximately 15% had two genotypes of HPV. One individual had HPV of 6 different genotypes, including 16, 18, 52, 53, 56, and CP8304. The most frequent genotype was 52, followed by CP8304, 58, and 53. The oncogenic types 16 and 18 were found in 112 and 52 participants, corresponding to a prevalence of 0.9% (CI: 0.8 - 1.1%) and 0.4% (CI: 0.3 - 0.6%), respectively, for the 9,182 individuals included in this study. CONCLUSIONS: The prevalence of 13.2% for HPV among unselected and asymptomatic individuals who received a general health check is high in the Sichuan area. Identification of high-risk HPV types is essential for preventing or early detection of cervical cancers and consequently save life.


Subject(s)
Alphapapillomavirus/classification , Alphapapillomavirus/genetics , Papillomavirus Infections/epidemiology , Papillomavirus Infections/virology , Adolescent , Adult , Aged , Aged, 80 and over , Cervix Uteri/virology , China/epidemiology , Cross-Sectional Studies , DNA, Viral/genetics , Early Detection of Cancer , Female , Genotype , Humans , Mass Screening , Middle Aged , Prevalence , Young Adult
7.
Biochim Biophys Acta Biomembr ; 1861(11): 183036, 2019 11 01.
Article in English | MEDLINE | ID: mdl-31394100

ABSTRACT

G-protein coupled receptors (GPCRs) typically have an amphipathic helix ("helix 8") immediately C-terminal to the transmembrane helical bundle. To date, a number of functional roles have been associated with GPCR helix 8 segments, but structure-function analysis for this region remains limited. Here, we examine helix 8 of the apelin receptor (AR or APJ), a class A GPCR with wide physiological and pathophysiological relevance. The 71 residue C-terminal tail of the AR is primarily intrinsically disordered, with a detergent micelle-induced increase in helical character. This helicity was localized to the helix 8 region, in good agreement with the recent AR crystal structure. A series of helix 8 mutants were made to reduce helicity, remove amphipathy, or flip the hydrophobic and hydrophilic faces. Each mutant AR was tested both biophysically, in the isolated C-terminal tail, and functionally in HEK 293 T cells, for full-length AR. In all instances, micelle interactions were maintained, and steady-state AR expression was efficient. However, removal of amphipathy or helical character led to a significant decrease in cell surface localization. Flipping of helix 8 amphipathic topology restored cell surface localization to some degree, but still was significantly reduced relative to wild-type. Structural integrity, amphipathy to drive membrane association, and correct topology of helix 8 membrane association all thus appear important for cell surface localization of the AR. This behavior correlates well to GPCR C-terminal tail sequence motifs, implying that these serve to specify key topological features of helix 8 and its proximity to the transmembrane domain.


Subject(s)
Apelin Receptors/genetics , Apelin Receptors/metabolism , Cell Membrane/metabolism , Amino Acid Sequence/genetics , Apelin/metabolism , Apelin Receptors/physiology , Cell Membrane/physiology , HEK293 Cells , Humans , Hydrophobic and Hydrophilic Interactions , Membranes/metabolism , Micelles , Protein Structure, Secondary/physiology , Protein Transport/physiology , Receptors, Cell Surface/metabolism , Receptors, G-Protein-Coupled/metabolism
8.
Saudi J Biol Sci ; 26(4): 854-859, 2019 May.
Article in English | MEDLINE | ID: mdl-31049014

ABSTRACT

Inteins are internal protein sequences capable of catalyzing a protein splicing reaction by self-excising from a precursor protein and simultaneously joining the flanking sequences with a peptide bond. Split inteins have separate pieces (N-intein and C-intein) that reassemble non-covalently to catalyze a protein trans-splicing reaction joining two polypeptides. Protein splicing has become increasingly useful tools in many fields of biological research and biotechnology. However, natural and engineered inteins have failed previously to function when being flanked by proline residue at the -1 or +2 positions, which limits general uses of inteins. In this study, different engineered inteins were tested. We found that engineered Ssp DnaX mini-intein and split inteins could carry out protein splicing with proline at the +2 positions or at both -1 and +2 positions. Under in vivo conditions in E. coli cells, the mini-intein, S1 split intein, and S11 split intein spliced efficiently, whereas the S0 split intein did not splice with proline at both -1 and +2 positions. The S1 and S11 split inteins also trans-spliced efficiently in vitro with proline at the +2 positions or at both -1 and +2 positions, but the S0 split intein trans-spliced inefficiently with proline at the +2 position and did not trans-splice with proline at both -1 and +2 positions. These findings contribute significantly to the toolbox of intein-based technologies by allowing the use of inteins in proteins having proline at the splicing point.

9.
Small ; 15(12): e1805294, 2019 03.
Article in English | MEDLINE | ID: mdl-30756524

ABSTRACT

Spider silks are desirable materials with mechanical properties superior to most synthetic materials coupled with biodegradability and biocompatibility. In order to replicate natural silk properties using recombinant spider silk proteins (spidroins) and wet-spinning methods, the focus to date has typically been on modifying protein sequence, protein size, and spinning conditions. Here, an alternative approach is demonstrated. Namely, using the same ≈57 kDa recombinant aciniform silk protein with a consistent wet-spinning protocol, fiber mechanical properties are shown to significantly differ as a function of the solvent used to dissolve the protein at high concentration (the "spinning dope" solution). A fluorinated acid/alcohol/water dope leads to drastic improvement in fibrillar extensibility and, correspondingly, toughness compared to fibers produced using a previously developed fluorinated alcohol/water dope. To understand the underlying cause for these mechanical differences, morphology and structure of the two classes of silk fiber are compared, with features tracing back to dope-state protein structuring and preassembly. Specifically, distinct classes of spidroin nanoparticles appear to form in each dope prior to fiber spinning and these preassembled states are, in turn, linked to fiber morphology, structure, and mechanical properties. Tailoring of dope-state spidroin nanoparticle assembly, thus, appears a promising strategy to modulate fibrillar silk properties.


Subject(s)
Recombinant Proteins/chemistry , Silk/chemistry , Animals , Anisotropy , Dynamic Light Scattering , Nanoparticles/chemistry , Protein Structure, Secondary , Proton Magnetic Resonance Spectroscopy , Silk/ultrastructure , Solvents/chemistry , Spectrum Analysis, Raman , Spiders , Stress, Mechanical , Viscosity
10.
Biomacromolecules ; 18(11): 3678-3686, 2017 Nov 13.
Article in English | MEDLINE | ID: mdl-28934550

ABSTRACT

Spider aciniform (or wrapping) silk is the toughest of the seven types of spider silks/glue due to a combination of high elasticity and strength. Like most spider silk proteins (spidroins), aciniform spidroin (AcSp1) has a large core repetitive domain flanked by relatively short N- and C-terminal nonrepetitive domains (the NTD and CTD, respectively). The major ampullate silk protein (MaSp) CTD has been shown to control protein solubility and fiber formation, but the aciniform CTD function remains unknown. Here, we compare fiber mechanical properties, solution-state structuring, and fibrous state secondary structural composition, and orientation relative to native aciniform silk for two AcSp1 repeat units with or without fused AcSp1- and MaSp-derived CTDs alongside three AcSp1 repeat units without a CTD. The native AcSp1 CTD uniquely modulated fiber mechanical properties, relative to all other constructs, directly correlating to a native-like structural transformation and alignment.


Subject(s)
Fibroins/chemistry , Silk/chemistry , Spiders/chemistry , Animals , Elasticity , Fibroins/genetics , Mechanical Phenomena , Protein Domains , Repetitive Sequences, Amino Acid/genetics , Silk/genetics , Spiders/genetics
11.
Int J Mol Sci ; 17(8)2016 Aug 10.
Article in English | MEDLINE | ID: mdl-27517921

ABSTRACT

Spider aciniform (wrapping) silk is a remarkable fibrillar biomaterial with outstanding mechanical properties. It is a modular protein consisting, in Argiope trifasciata, of a core repetitive domain of 200 amino acid units (W units). In solution, the W units comprise a globular folded core, with five α-helices, and disordered tails that are linked to form a ~63-residue intrinsically disordered linker in concatemers. Herein, we present nuclear magnetic resonance (NMR) spectroscopy-based (15)N spin relaxation analysis, allowing characterization of backbone dynamics as a function of residue on the ps-ns timescale in the context of the single W unit (W1) and the two unit concatemer (W2). Unambiguous mapping of backbone dynamics throughout W2 was made possible by segmental NMR active isotope-enrichment through split intein-mediated trans-splicing. Spectral density mapping for W1 and W2 reveals a striking disparity in dynamics between the folded core and the disordered linker and tail regions. These data are also consistent with rotational diffusion behaviour where each globular domain tumbles almost independently of its neighbour. At a localized level, helix 5 exhibits elevated high frequency dynamics relative to the proximal helix 4, supporting a model of fibrillogenesis where this helix unfolds as part of the transition to a mixed α-helix/ß-sheet fibre.


Subject(s)
Insect Proteins/chemistry , Silk/chemistry , Animals , Magnetic Resonance Spectroscopy , Protein Structure, Secondary , Spiders/chemistry , Trans-Splicing
12.
Biomacromolecules ; 17(8): 2737-46, 2016 08 08.
Article in English | MEDLINE | ID: mdl-27387592

ABSTRACT

Spider silks are outstanding biomaterials with mechanical properties that outperform synthetic materials. Of the six fibrillar spider silks, aciniform (or wrapping) silk is the toughest through a unique combination of strength and extensibility. In this study, a wet-spinning method for recombinant Argiope trifasciata aciniform spidroin (AcSp1) is introduced. Recombinant AcSp1 comprising three 200 amino acid repeat units was solubilized in a 1,1,1,3,3,3-hexafluoro-2-propanol (HFIP)/water mixture, forming a viscous α-helix-enriched spinning dope, and wet-spun into an ethanol/water coagulation bath allowing continuous fiber production. Post-spin stretching of the resulting wet-spun fibers in water significantly improved fiber strength, enriched ß-sheet conformation without complete α-helix depletion, and enhanced birefringence. These methods allow reproducible aciniform silk fiber formation, albeit with lower extensibility than native silk, requiring conditions and methods distinct from those previously reported for other silk proteins. This provides an essential starting point for tailoring wet-spinning of aciniform silk to achieve desired properties.


Subject(s)
Fibroins/chemistry , Recombinant Proteins/chemistry , Silk/chemistry , Spiders/chemistry , Animals , Fibroins/ultrastructure , Microscopy, Atomic Force , Silk/ultrastructure
13.
Biochemistry ; 55(21): 3048-59, 2016 05 31.
Article in English | MEDLINE | ID: mdl-27153372

ABSTRACT

Aciniform silk protein (AcSp1) is the primary component of wrapping silk, the toughest of the spider silks because of a combination of high tensile strength and extensibility. Argiope trifasciata AcSp1 contains a core repetitive domain with at least 14 homogeneous 200-amino acid units ("W" units). Upon fibrillogenesis, AcSp1 converts from an α-helix-rich soluble state to a mixed α-helical/ß-sheet conformation. Solution-state nuclear magnetic resonance (NMR) spectroscopy allowed demonstration of variable local stability within the W unit, but comprehensive characterization was confounded by spectral overlap, which was exacerbated by decreased chemical shift dispersion upon denaturation. Here, (19)F NMR spectroscopy, in the context of a single W unit (W1), is applied to track changes in structure and dynamics. Four strategic positions in the W unit were mutated to tryptophan and biosynthetically labeled with 5-fluorotryptophan (5F-Trp). Simulated annealing-based structure calculations implied that these substitutions should be tolerated, while circular dichroism (CD) spectroscopy and (1)H-(15)N chemical shift displacements indicated minimal structural perturbation in W1 mutants. Fiber formation by W2 concatemers containing 5F-Trp substitutions in both W units demonstrated retention of functionality, a somewhat surprising finding in light of sequence conservation between species. Each 5F-Trp-labeled W1 exhibited a unique (19)F chemical shift, line width, longitudinal relaxation time constant (T1), and solvent isotope shift. Perturbation to (19)F chemical shift and nuclear spin relaxation parameters reflected changes in the conformation and dynamics at each 5F-Trp site upon addition of urea and dodecylphosphocholine (DPC). (19)F NMR spectroscopy allowed unambiguous localized tracking throughout titration with each perturbant, demonstrating distinct behavior for each perturbant not previously revealed by heteronuclear NMR experiments.


Subject(s)
Fluorine Radioisotopes/metabolism , Insect Proteins/chemistry , Magnetic Resonance Spectroscopy/methods , Silk/chemistry , Spiders/physiology , Tensile Strength , Animals , Circular Dichroism , Fluorine Radioisotopes/analysis , Insect Proteins/genetics , Insect Proteins/metabolism , Mutagenesis, Site-Directed , Mutation/genetics , Protein Conformation , Tryptophan/genetics
14.
Biochem Cell Biol ; 94(6): 507-527, 2016 Dec.
Article in English | MEDLINE | ID: mdl-27010607

ABSTRACT

Membrane proteins are still heavily under-represented in the protein data bank (PDB), owing to multiple bottlenecks. The typical low abundance of membrane proteins in their natural hosts makes it necessary to overexpress these proteins either in heterologous systems or through in vitro translation/cell-free expression. Heterologous expression of proteins, in turn, leads to multiple obstacles, owing to the unpredictability of compatibility of the target protein for expression in a given host. The highly hydrophobic and (or) amphipathic nature of membrane proteins also leads to challenges in producing a homogeneous, stable, and pure sample for structural studies. Circumventing these hurdles has become possible through the introduction of novel protein production protocols; efficient protein isolation and sample preparation methods; and, improvement in hardware and software for structural characterization. Combined, these advances have made the past 10-15 years very exciting and eventful for the field of membrane protein structural biology, with an exponential growth in the number of solved membrane protein structures. In this review, we focus on both the advances and diversity of protein production and purification methods that have allowed this growth in structural knowledge of membrane proteins through X-ray crystallography, nuclear magnetic resonance (NMR) spectroscopy, and cryo-electron microscopy (cryo-EM).


Subject(s)
Membrane Proteins/chemistry , Membrane Proteins/metabolism , Animals , Crystallography, X-Ray , Humans , Membrane Proteins/genetics , Membrane Proteins/isolation & purification
15.
Appl Microbiol Biotechnol ; 99(19): 8151-61, 2015 Oct.
Article in English | MEDLINE | ID: mdl-26227407

ABSTRACT

Site-specific protein labeling are powerful means of protein research and engineering; however, new and improved labeling methods are greatly needed. Split inteins catalyze a protein trans-splicing reaction that can be used for enzymatic and nearly seamless protein labeling. Non-canonical S11 split intein has been used in an earlier method of protein C-terminal labeling; however, its relatively large (~150 aa) N-intein fused to the target protein often hindered protein expression, folding, and solubility. To solve this problem, here, we have designed and demonstrated a new method of protein C-terminal labeling, by first engineering a functional non-canonical S1 split intein that has an extremely small (12 aa) N-intein and a cysteine-free C-intein. An engineered Rma DnaB S1 split intein was modified to have a cysteine-free C-intein, while still retaining its robust trans-splicing function, which permitted the C-extein in a C-precursor to have a single cysteine for easy and specific linkage with desired labeling groups. The resulting new and generally useful method has two unique advantages: (1) The extremely small (12 aa) N-intein, which must be fused to the C terminus of the target protein, is less likely to hinder the protein expression, folding, and solubility; and (2) the single cysteine in the C-extein may be readily linked to a variety of labeling or modification groups using commercially available reagents.


Subject(s)
Inteins , Protein C/genetics , Amino Acid Motifs , Amino Acid Sequence , Cysteine/chemistry , Cysteine/genetics , Cysteine/metabolism , Kinetics , Molecular Sequence Data , Protein C/chemistry , Protein C/metabolism , Protein Splicing , Trans-Splicing
16.
Sci Rep ; 5: 11502, 2015 Jun 26.
Article in English | MEDLINE | ID: mdl-26112753

ABSTRACT

Spiders store spidroins in their silk glands as high concentration aqueous solutions, spinning these dopes into fibres with outstanding mechanical properties. Aciniform (or wrapping) silk is the toughest spider silk and is devoid of the short amino acid sequence motifs characteristic of the other spidroins. Using solution-state NMR spectroscopy, we demonstrate that the 200 amino acid Argiope trifasciata AcSp1 repeat unit contrasts with previously characterized spidroins, adopting a globular 5-helix bundle flanked by intrinsically disordered N- and C-terminal tails. Split-intein-mediated segmental NMR-active isotope-enrichment allowed unambiguous demonstration of modular and malleable "beads-on-a-string" concatemeric behaviour. Concatemers form fibres upon manual drawing with silk-like morphology and mechanical properties, alongside secondary structuring and orientation consistent with native AcSp1 fibres. AcSp1 structural stability varies locally, with the fifth helix denaturing most readily. The structural transition of aciniform spidroin from a mostly α-helical dope to a mixed α-helix/ß-sheet-containing fibre can be directly related to spidroin architecture and stability.


Subject(s)
Protein Precursors/chemistry , Silk/chemistry , Spiders/metabolism , Amino Acid Motifs , Animals , Dynamic Light Scattering , Fibroins/chemistry , Hydrodynamics , Insect Proteins/chemistry , Insect Proteins/genetics , Insect Proteins/metabolism , Nuclear Magnetic Resonance, Biomolecular , Protein Precursors/metabolism , Protein Structure, Secondary , Protein Structure, Tertiary , Recombinant Fusion Proteins/biosynthesis , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics
17.
Protein Expr Purif ; 112: 29-36, 2015 Aug.
Article in English | MEDLINE | ID: mdl-25907381

ABSTRACT

Endoplasmic reticulum resident protein 44 (ERp44) is a member of the protein disulfide isomerase family and functions in oxidative protein folding in the endoplasmic reticulum. A structurally flexible C-terminal tail (C-tail) of ERp44 plays critical roles in dynamically regulating ERp44's function in protein folding quality control. The structure-function dynamics of ERp44's C-tail may be studied further using fluorescence and other techniques, if methods are found to label the C-tail site-specifically with a fluorescent group or segmentally with other desired labels. Here we have developed such methods, employing split inteins capable of protein trans-splicing, and identifying atypical S1 split inteins able to function efficiently at a suitable split site in the ERp44 sequence. One method demonstrated segmental expression of ERp44 for segmental labeling of the C-tail, another method efficiently added a commercially available fluorescent group to the C-terminus of ERp44, and both methods may also be generally useful for studying other proteins.


Subject(s)
Escherichia coli/genetics , Inteins , Membrane Proteins/genetics , Molecular Chaperones/genetics , Protein Splicing , Amino Acid Sequence , Fluorescence , Fluorescent Dyes/analysis , Fluorescent Dyes/metabolism , Humans , Membrane Proteins/analysis , Molecular Chaperones/analysis , Molecular Sequence Data , Recombinant Fusion Proteins/analysis , Recombinant Fusion Proteins/genetics , Trans-Splicing
18.
Article in Chinese | MEDLINE | ID: mdl-25065208

ABSTRACT

OBJECTIVE: To investigate the serum levels of IFN-gamma and IL-4, and the dynamic changes of IFN-gamma-specific and IL-4-specific lymphocytes in mice with Schistosoma japonicum infection after treatment by praziquantel. METHODS: Ninety BALB/c mice were randomly divided into three groups (n = 30) named as infection group, treatment group and control group. The mice in treatment group and infection group were infected with (25 +/- 2) S. japonicum cercariae through the abdominal skin. At 6 weeks post-infection, the mice in treatment group were administered orally with praziquantel [300 mg/(kg x d)] for 3 d. At 4, 6, 8 and 12 weeks post-treatment, the mice were weighed, and serum samples were collected. Serum levels of IFN-gamma and IL-4 were measured by ELISA. At the same time, the spleens were aseptically removed to prepare cell suspension, and the counts of IFN-gamma and IL-4 specific lymphocytes were examined by ELISPOT after stimulation of Schistosoma japonicum soluble egg antigen (SEA). RESULTS: From 4 to 12 weeks after praziquantel treatment, the body weight of mice in treatment group were significantly heavier than that of infection group (P < 0.05), but no significant difference was found between treatment group and control group (P < 0.05). At 4 weeks posttreatment, there was no significant difference in serum levels of IFN-gamma and IL-4 between treatment group and infection group (P > 0.05). At 6, 8, and 12 weeks after treatment, the serum levels of IFN-gamma (0.038 +/- 0.013, 0.028 +/- 0.001, and 0.027 +/- 0.007) and IL-4(0.051 +/- 0.020, 0.045 +/- 0.019, and 0.043 +/- 0.016) in treatment group were significantly lower than that of infection group (IFN-gamma: 0.057 +/- 0.004, 0.060 +/- 0.023, and 0.052 +/- 0.017; IL-4: 0.150 +/- 0.014, 0.148 +/- 0.014, and 0.123 +/- 0.017) (P < 0.05). Serum IFN-gamma and IL-4 levels in treatment group and infection group were significantly higher than that of control group (P < 0.05). ELISPOT results showed that at 4, 6 weeks post-treatment, there was no significant difference in the number of IFN-gamma-specific lymphocytes between treatment group and infection group (P > 0.05). While at 8 and 12 weeks after treatment, the IFN-gamma-specific lymphocytes in treatment group (39.9 +/- 22.8 and 38.5 +/- 6.2) were significantly less than that of infection group (141.9 +/- 39.3 and 106.8 +/- 28.6) (P < 0.05). At 4-week post-treatment, the IL-4-specific lymphocytes in treatment group were much more than that of infection group (175.6 +/- 62.3) (P < 0.05), and then began to decline. At 8 and 12 weeks after treatment, the IL-4-specific lymphocytes (111.3 +/- 14.3 and 113.0 +/- 44.2) in treatment group were significantly less than that of infection group (220.3 +/- 107.1 and 208.1 +/- 17.2) (P < 0.05). The IFN-gamma-specific and IL-4-specific lymphocytes in treatment group and infection group were significantly more than that of control group (P < 0.05). CONCLUSION: After praziquantel treatment, the serum levels of IFN-gamma and IL-4 in mice with S. japonicum infection decrease, and the number of IFN-gamma and IL-4 specific lymphocytes reduces.


Subject(s)
Interferon-gamma/immunology , Interleukin-4/immunology , Praziquantel/therapeutic use , Schistosomiasis japonica/drug therapy , T-Lymphocytes/immunology , Animals , Cercaria , Enzyme-Linked Immunosorbent Assay , Mice , Mice, Inbred BALB C , Schistosomiasis japonica/immunology , Spleen
19.
Biochem Cell Biol ; 92(4): 269-78, 2014 Aug.
Article in English | MEDLINE | ID: mdl-24943103

ABSTRACT

G-protein coupled receptors (GPCRs) are inherently dynamic membrane protein modulators of various important cellular signaling cascades. The apelin receptor (AR or APJ) is a class A GPCR involved in numerous physiological processes, implicated in angiogenesis during tumour formation and as a CD4 co-receptor for entry of human immunodeficiency virus type 1 (HIV-1) to cells. Due to the lack of efficient methods to produce full-length GPCRs enriched with nuclear magnetic resonance (NMR) active (15)N, (13)C, and (or) (2)H isotopes, small GPCR fragments typically comprising 1-2 transmembrane segments are frequently studied using NMR spectroscopy. Here, we report successful overexpression of transmembrane segments 1-3 of AR (AR_TM1-3) in the C41(DE3) strain of Escherichia coli using an AT-rich gene tag previously reported to enhance cell-free expression yields. The resulting protein, with 6 additional N-terminal residues due to the expression tag, was purified using high-performance liquid chromatography (HPLC). Far UV circular dichroism spectropolarimetry demonstrates that AR_TM1-3 has the predicted ~40% α-helical character in membrane-mimetic environments. (1)H-(15)N HSQC NMR experiments imply amenability to high-resolution NMR structural characterization and stability in solution for weeks. Notably, this small expression tag approach may also be generally applicable to other membrane proteins that are difficult to express in E. coli.


Subject(s)
Peptide Fragments/biosynthesis , Receptors, G-Protein-Coupled/biosynthesis , Apelin Receptors , Cloning, Molecular , Codon , Escherichia coli , Gene Expression , Humans , Inclusion Bodies/metabolism , Nuclear Magnetic Resonance, Biomolecular , Peptide Fragments/genetics , Peptide Fragments/isolation & purification , Protein Structure, Secondary , Receptors, G-Protein-Coupled/genetics , Receptors, G-Protein-Coupled/isolation & purification , Recombinant Proteins/biosynthesis , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification
20.
FEBS Open Bio ; 3: 328-33, 2013.
Article in English | MEDLINE | ID: mdl-24251091

ABSTRACT

The peptide hormone apelin is translated as a 77-residue preproprotein, truncated to the 55-residue proapelin and, subsequently, to 13-36-residue bioactive isoforms named apelin-13 to -36. Proapelin is hypothesized to be cleaved to apelin-36 and then to the shorter isoforms. However, neither the mechanism of proapelin processing nor the endoproteases involved have been determined. We show direct cleavage of proapelin to apelin-13 by proprotein convertase subtilisin/kexin 3 (PCSK3, or furin) in vitro, with no production of longer isoforms. Conversely, neither PCSK1 nor PCSK7 has appreciable proapelin cleavage activity. Furthermore, we show that both proapelin and PCSK3 transcript expression levels are increased in adipose tissue with obesity and during adipogenesis, suggesting that PCSK3 is responsible for proapelin processing in adipose tissue.

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