Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 24
Filter
Add more filters










Publication year range
1.
J Org Chem ; 88(7): 4286-4300, 2023 Apr 07.
Article in English | MEDLINE | ID: mdl-36943919

ABSTRACT

The photochemical reactivity of diphenyldiazomethane 1 and phenyl 1- and 2-adamantyl diazomethanes 2 and 3, respectively, was investigated by transient absorption spectroscopy (TA). Photoelimination of N2 upon UV excitation takes place in the anti-Kasha ultrafast photochemical reaction from the upper excited singlet states to deliver singlet carbenes, which were, in the case of 1 and 2, detected by fs-TA. The reactivity of the carbenes differs with respect to the substituent at the carbene center. The singlet car-1 in a nonpolar solvent delivers the triplet carbene by intersystem crossing (ISC). Singlet car-2 does not undergo ISC but reacts in the intermolecular insertion reactions into C-H bonds. Car-3 has an α-C-H bond next to the carbene center and reacts rapidly in the intramolecular C-H insertion reaction to deliver alkene, precluding its detection by fs-TA. However, the isolation of ketone photoproducts from 3 is highly indicative of triplet car-3's intermediate formation. The TA spectra from the S1-S3 states of 1-3 were computed using time-dependent density functional theory, while the multiconfigurational perturbation theory to the second order was used for the absorption spectra of the corresponding singlet and triplet carbenes. The modeled and measured spectra are in good agreement, and the computations corroborate the assignments of the key short-lived intermediates.

2.
Phys Chem Chem Phys ; 23(17): 10429-10439, 2021 May 05.
Article in English | MEDLINE | ID: mdl-33890593

ABSTRACT

We measured and computed the rate constants of the reaction between the α-hydroxyethyl radical (˙CH(CH3)OH) and bromoacetate (BrCH2CO2-) in the non-buffered (NB), as well as in the bicarbonate (HCO3-) and hydrogen phosphate (HPO42-) buffered aqueous solutions in the presence of ethanol. These complex multistep reactions are initiated by the proton-coupled electron transfer (PCET) which reduces BrCH2CO2- and incites its debromination. The PCET is followed by the step in which the resulting carboxymethyl radical propagates a radical chain reaction thus recovering ˙CH(CH3)OH and enhancing the debromination yields. It is found that the rate constants for the initial PCET step (k1) are raised by ca. an order of magnitude in the presence of the buffers (k1(NB) = 1.4 × 105 dm3 mol-1 s-1; k1(HCO3-) = 1.4 × 106 dm3 mol-1 s-1; k1(HPO42-) = 1.1 × 106 dm3 mol-1 s-1). To rationalize this, we used density functional theory at the M06-2X-D3/6-311+G(2d,p) level in conjunction with the polarizable continuum model (PCM) for an implicit description of the aqueous environment. To acceptably reproduce the measured rate constants, the minimal solute, consisting of ˙CH(CH3)OH, BrCH2CO2- and the buffer anion, has to be expanded by at least 2-3 explicit molecules of the water solvent. The used kinetic model consisting of a set of coupled differential equations indicates the sigmoid dependence of yields vs. k1 thereby confirming the autocatalytic trait of these reactions. The computations unravel the profound influence of the presence of buffers on these reaction systems. On the one hand, the buffer anions promote the PCET by accelerating the proton transfer; on the other hand, they slow down the propagation step by forming the strong hydrogen bonds with the carboxymethyl radical. The two opposing effects cancel out and cause the Br- yields to remain approximately comparable in the non-buffered and buffered media.

3.
Phys Chem Chem Phys ; 22(43): 25396-25407, 2020 Nov 21.
Article in English | MEDLINE | ID: mdl-33141120

ABSTRACT

Compounds containing trivalent boron (TB) as the electron-deficient site(s) find numerous practical uses ranging from Lewis bases in organic synthesis to high-tech industry, with a number of novel applications anticipated. We present an experimental and theoretical study of the gas-phase valence photoionization (VUV-PES), core photoionization (XPS) and photoexcitation (NEXAFS) spectra of a representative TB compound catecholborane (CB). For modelling and assigning the spectra we used the ΔDFT and restricted single excitation space TD-DFT methods for the XPS and NEXAFS, and OVGF and EOM-CCSD for the VUV-PES. The vibrationally resolved structure was computed in the Franck-Condon (FC) and Herzberg-Teller (FCHT) approximations generally resulting in a good agreement with the observed spectral features. For the prediction of core-electron binding energies (CEBEs) several density functionals were tested. The best performance overall was furnished by ωB97X-D suggesting that including the dispersion correction is beneficial. The FCHT vibronic intensities are in clear discrepancy with the B 1s NEXAFS spectrum if the harmonic approximation is used for the B-H wagging mode both in the ground and in the first core-excited state. Instead, a much better agreement is obtained if the excited state potential is approximated to a symmetric double-well. The observed vibronic pattern could be a general fingerprint of the presence of TB centre(s), specifically, the transfer of the (core) density to the vacant boron p-orbital in the excited state.

4.
Phys Chem Chem Phys ; 21(42): 23425-23440, 2019 Nov 14.
Article in English | MEDLINE | ID: mdl-31616882

ABSTRACT

We carried out an investigation of the performances of 18 density functionals (DFs) for modelling the mechanisms and kinetics of the aqueous phase reactions between the α-hydroxyisopropyl radical and 9 organic substrates. The primary goal was to evaluate the applicability of density functional theory specifically in conjunction with the polarizable continuum model (DFT/PCM) for a fully implicit description of the aqueous environment. Accordingly, the solute is augmented with the explicit molecule(s) of the water solvent only when it is confirmed that the water participates in the reaction mechanism directly and not just as a potential donor or acceptor of additional hydrogen bonds. The tested DFs are chosen by systematically ascending the Jacob's ladder of DFs with particular emphasis on the versatile Minnesota family. For most of the DFs we used the empirical corrections for the dispersion in accordance with Grimme's D3 or D3-BJ models. The optimum DFs are determined on the basis of the lowest mean absolute errors (MAEs) and the largest Pearson correlation coefficients (PCCs) with respect to the set of experimentally determined rate constants. The studied substrates are carbon tetrachloride (CCl4), chloroform (CHCl3), trichloroacetate (Cl3Ac-), chloral hydrate (ClH), iodoacetate (IAc-), iodoacetamide (IAm), 5-bromouracil (BrU), 5-nitrouracil (NO2U), and cysteamine (Cys+). The mechanisms that contribute dominantly to the observed rate constants are: chlorine abstractions for CCl4, CHCl3, Cl3Ac-, and ClH; proton-coupled electron transfer (PCET) for IAc-; water-assisted PCET and iodine abstraction for IAm; ortho-addition for BrU and NO2U; and hydrogen atom abstraction from the sulphur atom for Cys+. It is found that in the DFT/PCM setting climbing up the Jacob's ladder does not necessarily imply a systematically increasing accuracy. Thus, M06-D3 and PBE0-D3 exhibit the best performance according to the lowest MAEs (1.10 and 1.26 kcal mol-1 MAEs in the Gibbs free energies of activation), and M06-D3, M06-2X-D3 and MN15 according to the largest PCCs (0.95, 0.94, and 0.94). In a surprising contrast, the three tested double-hybrid DFs, B2PLYP-D3, DSD-PBEP86, and PBEQIDH, all exhibit comparatively large MAEs and poor PCCs, and therefore do not appear well-suited for use in the DFT/PCM framework.

5.
Phys Chem Chem Phys ; 20(30): 19829-19840, 2018 Aug 01.
Article in English | MEDLINE | ID: mdl-30033455

ABSTRACT

The reaction systems of α-hydroxyalkyl radicals with halogenated organics in aqueous solutions are uniquely suited for studying the fundamentally important proton-coupled electron transfer (PCET) mechanism in competition with alternatives such as substitution, hydrogen abstraction, halogen atom abstraction etc. We report experimental (steady state γ-radiolysis) and theoretical (density functional theory) studies of reactions of the α-hydroxyethyl radical (˙EtOH) with the four monohaloacetate anions (XAc-): fluoroacetate (FAc-), chloroacetate (ClAc-), bromoacetate (BrAc-) and iodoacetate (IAc-). The reactions are conducted in non-buffered and buffered (bicarbonate or phosphate) aqueous solutions of ethanol. In these conditions, only IAc- and BrAc- are reduced by ˙EtOH, and the PCET is predicted to be the most feasible reaction mechanism. In contrast to analogous reaction systems with alkyl halides, halophenols and 5-bromouracil, the radical-mediated one-electron reduction and subsequent dehalogenation of IAc- and BrAc- proceed regardless of the presence of buffers as the external proton acceptors. This implies that the proton can be efficiently transferred to the carboxyl group. The proton transfer is predicted to take place directly as interposition of one water molecule raises the barriers to the PCET. The addition of HCO3- or HPO42- accelerates the PCET owing to their larger proton affinities compared to that of the carboxyl group. The reduction of IAc- and BrAc- generates daughter carboxymethyl radicals thus initiating a radical chain reaction which considerably enhances the Br- and I- yields. In contrast, ClAc- and FAc- are not degraded by ˙EtOH even at elevated temperatures. These comparatively simple reaction systems enable general insights into PCET processes in which the carboxyl group may assume the role of proton acceptor.

6.
Phys Chem Chem Phys ; 20(4): 2480-2491, 2018 Jan 24.
Article in English | MEDLINE | ID: mdl-29313539

ABSTRACT

Insights into the electronic structure of galvinoxyl - a prototype persistent free radical species - are of interest to elucidate its attractive photophysical and magnetic properties and to pave way for a sensible design of novel applications. To this end, we study the photoionization and photoexcitation UPS, XPS and NEXAFS spectra of the gas-phase galvinoxyl in the valence and core (C 1s and O 1s) regions using synchrotron X-ray radiation. We observe significant variations of relative band intensities with photon energy for valence ionizations below 10 eV which are rationalized in terms of the properties of the corresponding valence molecular orbitals. We calculate the core electron binding energies and core-excited states by employing the spin-unrestricted ΔDFT (B3LYP, M06-2X, and ωB97xD) and time-dependent DFT (SRC2-BLYP) methods. A good correlation between the calculations and the measured C 1s and O 1s XPS and NEXAFS spectra is obtained if one assumes that the galvinoxyl sample has undergone a partial degradation (around 50%) to the saturated (closed-shell) phenolic-quinonic derivative known as galvinol. We carry out a comparative theoretical analysis of the XPS and NEXAFS spectra of galvinoxyl and galvinol by assigning the relevant absorptions and pointing out the most important relative differences. The calculations identify a band in the O 1s NEXAFS spectrum whose diminishing intensity is a most manifest indicator of the extent of the degradation. Such a feature may thus prove useful in monitoring the scavenging dynamics of galvinoxyl using the core-excitation spectroscopy.

7.
J Phys Chem B ; 120(45): 11810-11820, 2016 11 17.
Article in English | MEDLINE | ID: mdl-27766877

ABSTRACT

The reactions of α-hydroxyalkyl radicals in aqueous medium are of interest because they exhibit a rich variety of fundamentally important competing mechanisms, such as proton-coupled electron transfer (PCET), hydrogen atom transfer, free radical substitutions, abstractions and additions, etc. We present a theoretical study of the mechanism and kinetics of the aqueous reactions of α-hydroxyisopropyl (2-propanol) radical with four halogenated organic substrates: iodoacetate (IAc), iodoacetamide (IAm), 5-bromouracil (5-BrU), and carbon tetrachloride (CCl4). The reactions are studied using density functional theory (DFT) (M06-2X), and the solvent is modeled as a polarizable continuum, either without the explicit solvent molecules or with one added water molecule. For an additional refinement, the double hybrid DFT B2PLYP energies were calculated at the M06-2X stationary points. Within this framework, for each substrate, we determine the most favorable radical-induced decomposition pathway among the several found and compare the thermochemical predictions against the experimental kinetics. The following dominant decomposition mechanisms are inferred: PCET for IAc, PCET-H2O and the I-atom abstraction for IAm, the ortho-addition to the double bond for 5-BrU, and the Cl-atom abstraction for CCl4. These pathways are invariably characterized by the negative apparent activation energies. Whereas for 5-BrU and CCl4 the transition state theory rate constants are in good agreement with the experiment, the rate constants for IAc and IAm-the two substrates reacting preferably via the PCET-are difficult to predict correctly. Consequently, the corresponding reaction barriers necessitate lowering by 1-3 kcal mol-1 to bring them in accord with experiment. The B2PLYP method provides a worthwhile improvement over the M06-2X energetics although the largest errors remain for the two PCET processes.

8.
Phys Chem Chem Phys ; 18(15): 10207-17, 2016 Apr 21.
Article in English | MEDLINE | ID: mdl-27020039

ABSTRACT

Core-hole spectroscopy adds to the fundamental understanding of the electronic structure of stable nitroxide free radicals thus paving way for a sensible design of new analogues with desired functionalities. We study the gas-phase C 1s, N 1s and O 1s excitation spectra of three nitroxide free radicals - TEMPO and two of its amide-substituted analogues - using the experimental NEXAFS technique and the theoretical TDDFT and ΔDFT methods in the unrestricted setting. The short-range corrected SRC1-BLYP and SRC2-BLYP exchange-correlation functionals are used with TDDFT, and the standard B3LYP functional with ΔDFT. The TDDFT-based detailed spectral assignment includes the valence, mixed valence-Rydberg and Rydberg portions of the spectra from the onset of absorptions to the vicinity of the core-ionization thresholds. The relative overlaps between the experimental and TDDFT-modelled spectra are reasonably good, in the range of 0.7-0.8, 0.6-0.8, and 0.7-0.8 for the C 1s, N 1s, and O 1s spectra, respectively. The extent of spin contamination within the unrestricted framework and its effect on the accuracy of the calculated excitation energies and dipole intensities are discussed in detail. It is concluded that, despite the sizeable spin contamination, the presently used methods are capable of predicting the core-excitation spectra of comparatively large free radical species fairly reliably over a wide spectral range.

9.
Phys Chem Chem Phys ; 17(16): 10656-67, 2015 Apr 28.
Article in English | MEDLINE | ID: mdl-25804194

ABSTRACT

The photoionization of three N-heterocyclic carbenes (NHCs) has been studied in the valence and core regions using synchrotron radiation. We observed different variations in the relative band intensities with photon energy for the NHCs in the valence ionization region. This is due to the intra-ring interactions between the C=C bond, nitrogen and carbene lone pairs in the heterocyclic ring of NHCs. In the core ionization region we observed chemical shifts which are consistent with the relative electron affinities of atoms and intramolecular electron density shifts. The core electron binding energies calculated via the unrestricted ΔDFT (B3LYP and M06-2X) approach are in very good agreement with the experiment. The shake-up portion of the core photoionization spectra is adequately described by the time-dependent DFT calculations relying on the CAM-B3LYP functional.

10.
Phys Chem Chem Phys ; 16(22): 10734-42, 2014 Jun 14.
Article in English | MEDLINE | ID: mdl-24756363

ABSTRACT

The photoionization of three stable nitroxyl radicals has been studied in the valence and core regions using synchrotron radiation. We observed different variations of the relative band intensities with the photon energy for two pyrrolidine nitroxyls (nitroxyl8 and nitroxyl9) in the valence ionization region. This is due to strong intramolecular interactions between the amide substituent and the ring π-orbital when present. In the core ionization region we observed chemical shifts which were consistent with the relative electron affinities of different atoms. We also observed the multiplet splitting of core level binding energies in the final ionic states. The core electron binding energies calculated via the restricted open shell Hartree-Fock based ΔSCF method exhibit good agreement with the experimental core ionization bands and with the assignment of the spectra by empirical analysis.


Subject(s)
Electrons , Nitrogen Oxides/chemistry , Molecular Structure , Photoelectron Spectroscopy
11.
Phys Chem Chem Phys ; 16(6): 2285-8, 2014 Feb 14.
Article in English | MEDLINE | ID: mdl-24382606

ABSTRACT

A conformation-selective photophysics study in phenylalanine model peptides, combining pump-probe gas phase experiments and excited state calculations, highlights for the first time the quenching properties of a primary amide group (through its nπ* excited state) along with the effect of vibrational energy that facilitates access to the conical intersection area.


Subject(s)
Peptides/chemistry , Phenylalanine/chemistry , Amides/chemistry , Models, Molecular , Ultraviolet Rays
12.
J Chem Theory Comput ; 10(6): 2333-43, 2014 Jun 10.
Article in English | MEDLINE | ID: mdl-26580753

ABSTRACT

The C 1s, N 1s, and O 1s ionization energies were calculated for the three stable nitroxide free radicals, viz., tempo and its two analogues, and compared to their most recent high-resolution core photoelectron spectra. We compare the performance of unrestricted and restricted open shell based ΔHF, ΔMP2, and ΔB3LYP methods. A mixed basis set is employed in all cases, which consists of the core-valence correlation-consistent triple-ζ basis set (cc-pCVTZ or cc-pwCVTZ) on the atom whose core-electron binding energy is calculated, model core potentials on the remaining first row atoms, and the cc-pVDZ basis set on the hydrogen atoms. The best overall performance for the three free radicals is offered by the restricted open shell based ΔB3LYP method. Surprisingly, both the restricted open and unrestricted second-order perturbation theories perform relatively poorly and typically do not warrant additional computational effort over the reference ΔHF methods. This is particularly true of the ΔZAPT method, which exhibits a number of grave failures that render it unsuitable for calculating the core-ionization spectra.

13.
Phys Chem Chem Phys ; 15(41): 18001-11, 2013 Nov 07.
Article in English | MEDLINE | ID: mdl-24061544

ABSTRACT

A remarkable buffer-mediated control between free-radical substitution (FRS) and proton-coupled electron transfer (PCET) is demonstrated for the reaction between iodoethane and the α-hydroxyethyl radical in neutral aqueous solution in the presence of bicarbonate or phosphate buffer. The reaction is initiated by the γ-radiolysis of the water solvent, and the products, either the iodine atom (FRS) or anion (PCET), are analysed using ion chromatographic and spectrophotometric techniques. A detailed insight into the mechanism is gained by employing density functional theory (M06-2X), Møller-Plesset perturbation treatment to the second order (MP2), and multireference methods (CASSCF/CASPT2). Addition of a basic buffer anion is indispensable for the reaction to occur and the competition between the two channels depends subtly on its proton accepting affinity, with FRS being the dominant channel in the phosphate and PCET in the bicarbonate containing solutions. Unlike the former, the latter channel sustains a chain-like process which significantly enhances the dehalogenation. The present systems furnish an example of the novel PCET/FRS dichotomy, as well as insights into possibilities of its efficient control.

14.
J Am Chem Soc ; 134(50): 20340-51, 2012 Dec 19.
Article in English | MEDLINE | ID: mdl-23171214

ABSTRACT

The mechanisms of nonradiative deactivation of a phenylalanine residue after near-UV photoexcitation have been investigated in an isolated peptide chain model (N-acetylphenylalaninylamide, NAPA) both experimentally and theoretically. Lifetime measurements at the origin of the first ππ* state of jet-cooled NAPA molecules have shown that (i) among the three most stable conformers of the molecule, the folded conformer NAPA B is ∼50-times shorter lived than the extended major conformer NAPA A and (ii) this lifetime is virtually insensitive to deuteration at the NH(2) and NH sites. Concurrent time-dependent density functional theory (TDDFT) based nonadiabatic dynamics simulations in the full dimensionality, carried out for the NAPA B conformer, provided direct insights on novel classes of ultrafast deactivation mechanisms, proceeding through several conical intersections and leading in fine to the ground state. These mechanisms are found to be triggered either (i) by a stretch of the N(Phe)H bond, which leads to an H-transfer to the ring, or (ii) by specific backbone amide distortions. The potential energy surfaces of the NAPA conformers along these critical pathways have been characterized more accurately using the coupled cluster doubles (CC2) method and shown to exhibit barriers that can be overcome with moderate excess energies. These results analyzed in the light of the experimental findings enabled us to assign the short lifetime of NAPA B conformer to a number of easily accessible exit channels from the initial ππ* surface, most importantly the one involving a transfer of electronic excitation to an nπ* surface, induced by distortions of the backbone peptide bond.


Subject(s)
Peptides/chemistry , Phenylalanine/chemistry , Photochemical Processes , Models, Molecular , Molecular Dynamics Simulation , Spectrophotometry, Ultraviolet
15.
J Phys Chem A ; 116(46): 11467-75, 2012 Nov 26.
Article in English | MEDLINE | ID: mdl-23009355

ABSTRACT

Nonadiabatic dynamics in the framework of time-dependent density functional theory was used to simulate gas-phase relaxation dynamics of pairs of conformations of formic acid monomers (cis and trans FAM) and dimers (acyclic aFAD and cyclic cFAD). In the early phase of the excited state dynamics, elongation of the C═O bond and pyramidalization of the carbon atom is observed in both FAM and FAD. Subsequently, the photodynamics of FAM is shown to be dominated by fragmentation processes occurring mostly in the excited state and resulting in HCO and OH radicals. In only a few cases does the dissociation take place from the vibrationally excited ground electronic state, whereby CO and H(2)O are the major reaction products. In the dimers, single proton transfer triggers ultrafast relaxation to the ground electronic state. In the single hydrogen bonded dimer about half of the trajectories dissociate into electronically excited monomers, whereas this potentially destructive dissociation is effectively suppressed in the double hydrogen bonded dimer. Upon relaxation to the ground electronic state, separation of FAD into monomers takes place, but without their further fragmentation on the time scale of the simulation. We conclude that the crucial difference between the FAM and FAD photodynamics is that the latter is dominated by nondestructive radiationless deactivation pathways during which a key protective role is assumed by the single (aFAD) or double (cFAD) intermonomer hydrogen bonds.


Subject(s)
Formates/chemistry , Quantum Theory , Dimerization , Hydrogen Bonding , Photochemical Processes
16.
Phys Chem Chem Phys ; 14(11): 3915-21, 2012 Mar 21.
Article in English | MEDLINE | ID: mdl-22318410

ABSTRACT

We performed a quasiclassical trajectory dynamics study on a model analytical 21-dimensional (7 active atoms) potential energy surface (PES) to examine in detail the mechanism of the hydrogen absorption in a simple (NaAlH(4))(2)Ti model system. The reaction involves a capture of H(2) by the Ti centre and formation of the (η(2)-H(2))Ti(NaAlH(3))(2) coordination complex containing the side-on bonded dihydrogen ligand. The calculated rate constant corresponds to a very fast capture of H(2) by the Ti coordination sphere without a demonstrable barrier. This implies that this step is not the rate-determining step in the complex multi-step process of the NaAlH(4) recovery. The model analytical PES captures the essence of this reaction well and the corresponding energy contours compare favourably to those based on the all-atom hybrid density functional theory calculations.

17.
Phys Chem Chem Phys ; 13(38): 16955-72, 2011 Oct 14.
Article in English | MEDLINE | ID: mdl-21887432

ABSTRACT

The widespread adoption of hydrogen as an energy carrier could bring significant benefits, but only if a number of currently intractable problems can be overcome. Not the least of these is the problem of storage, particularly when aimed at use onboard light-vehicles. The aim of this overview is to look in depth at a number of areas linked by the recently concluded HYDROGEN research network, representing an intentionally multi-faceted selection with the goal of advancing the field on a number of fronts simultaneously. For the general reader we provide a concise outline of the main approaches to storing hydrogen before moving on to detailed reviews of recent research in the solid chemical storage of hydrogen, and so provide an entry point for the interested reader on these diverse topics. The subjects covered include: the mechanisms of Ti catalysis in alanates; the kinetics of the borohydrides and the resulting limitations; novel transition metal catalysts for use with complex hydrides; less common borohydrides; protic-hydridic stores; metal ammines and novel approaches to nano-confined metal hydrides.

18.
J Phys Chem A ; 115(18): 4840-50, 2011 May 12.
Article in English | MEDLINE | ID: mdl-21495706

ABSTRACT

A combination of multireference CASSCF/CASPT2 and time-dependent DFT (TD-B3P86) theoretical treatments was employed to test their predictions against recently proposed assignments of the vacuum-UV spectra of fluorene and its three heteroanalogues-dibenzofuran, carbazole, and dibenzothiophene-up to the ionization threshold. For the low-lying transitions, the theoretically based assignments are generally not problematic because of the well-resolved bands, although, even in this region, the two methods yield some opposing predictions. Further on toward the vacuum region, the assignments prove increasingly challenging because of predicted crowding of transitions, many of which exhibit significant intensity. Some of the transitions in this region and beyond-toward the ionization thresholds-are thus necessarily assigned only tentatively. Overall, the two methods are frequently found to complement each other well, and equivalent transitions usually appear as bracketed from the high- (CASPT2) and low- (TD-B3P86) energy sides.


Subject(s)
Benzofurans/chemistry , Carbazoles/chemistry , Electrons , Fluorenes/chemistry , Quantum Theory , Thiophenes/chemistry , Time Factors
19.
Phys Chem Chem Phys ; 12(16): 4012-23, 2010 Apr 28.
Article in English | MEDLINE | ID: mdl-20379493

ABSTRACT

On the basis of density functional theory and coupled-cluster CCSD(T) calculations we propose a mechanism of the dehydrogenation of transition metal doped sodium alanate. Insertion of two early 3d-transition metals, scandium and titanium, both of which are promising catalysts for reversible hydrogen storage in light metal hydrides, is compared. The mechanism is deduced from studies on the decomposition of a model system consisting of one transition metal atom and two NaAlH(4) units. Subsequently, the significance of such minimal cluster model systems to the real materials is tested by embedding the systems into the surface of the NaAlH(4) crystal. It is found that the dehydrogenation proceeds via breaking of the bridge H-Al bond and consequent formation of intermediate coordination compounds in which the H(2) molecule is side-on (eta(2)-) bonded to the transition metal centre. The total barrier to the H(2) release is thus dependent upon both the strength of the Al-H bond to be broken and the depth of the coordinative potential. The analogous mechanism applies for the recognized three successive dehydrogenation steps. The gas-phase model structures embedded into the surface of the NaAlH(4) crystal exhibit an unambiguous kinetic stability and their general geometric features remain largely unchanged.

20.
J Phys Chem A ; 111(35): 8650-8, 2007 Sep 06.
Article in English | MEDLINE | ID: mdl-17691755

ABSTRACT

An extensive computational study of the conformational preferences of N-acetylphenylalaninylamide (NAPA) is reported, including conformational and anharmonic frequency analyses, as well as calculations of excitation energies of the four NAPA conformers lowest in energy. Particular attention is paid to the influence of hydrogen-bonding interactions on the relative stability of the conformers, which was found to be very sensitive to both the level of quantum chemical computations and the anharmonic treatment of molecular vibrations. The assignments of the UV spectral peaks are well supported by the multireference CASSCF/MS-CASPT2 calculations. Upon consideration of the second-order Möller-Plesset (MP2) and density functional theory (DFT) structures, overall energetics, and harmonic and anharmonic corrections, we found no conclusive theoretical evidence for the assumed conformational propensity of small model peptides toward extended beta-strand structures.


Subject(s)
Amides/chemistry , Oligopeptides/chemistry , Phenylalanine/analogs & derivatives , Hydrogen Bonding , Models, Chemical , Models, Molecular , Phenylalanine/chemistry , Protein Conformation , Thermodynamics
SELECTION OF CITATIONS
SEARCH DETAIL
...