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1.
Scand J Med Sci Sports ; 28(3): 1244-1251, 2018 Mar.
Article in English | MEDLINE | ID: mdl-29130575

ABSTRACT

There is an inherent risk of injury in male youth football; however, pertinent risk factors for injury have yet to be examined. This study used a prospective cohort design with 357 elite male youth football players (aged 10-18 years) assessed during the preseason period and then monitored during the season recording all non-contact lower extremity injuries. Screening tests included single leg hop for distance (SLHD); 75% of maximum hop and stick (75%Hop); single leg countermovement jump (SLCMJ); and the tuck jump assessment (TJ). Players were divided into subgroups based on chronological age. SLCMJ peak landing vertical ground reaction force (pVGRF) asymmetry was the most prominent risk factor (U11-U12s, OR 0.90, P = .04; and U15-U16s, OR 0.91, P < .001). Maturational offset (OR 0.58, P = .04), lower right leg SLCMJ pVGRF relative to body weight (OR 0.36, P = .03), and advanced chronological age (OR 3.62, P = .04) were also significantly associated with heightened injury risk in the U13-U14s, U15-U16s, and U18s, respectively. Univariate analyses showed combinations of anthropometric and movement screening risk factors were associated with heightened risk of lower extremity injury; however, there was variability across the different chronological age groups. Greater SLCMJ pVGRF asymmetry, lower right leg SLCMJ pVGRF %BW, later maturation, and advanced chronological age are potential risk factors for injury in elite male youth football players, although the strength of these relationships was often low to moderate. In addition, risk factors are likely to change at different stages of development.


Subject(s)
Athletic Injuries/epidemiology , Leg Injuries/epidemiology , Soccer/injuries , Adolescent , Anthropometry , Biomechanical Phenomena , Child , Exercise Test , Humans , Male , Prospective Studies , Risk Factors
2.
Scand J Med Sci Sports ; 25(5): e531-8, 2015 Oct.
Article in English | MEDLINE | ID: mdl-25556396

ABSTRACT

Fatigue is known to influence dynamic knee joint stability from a neuromuscular perspective, and electromechanical delay (EMD) plays an important role as the feedback activation mechanism that stabilizes the joint. The aim of this study was to investigate the influence of soccer-specific fatigue on EMD in U13-, U15-, and U17-year-old female soccer players. Thirty-six youth soccer players performed eccentric actions of the hamstrings in a prone position at 60, 120, and 180°/s before and after a soccer-specific fatigue trial. Surface electromyography was used to determine EMD from the semitendinosus, biceps femoris and gastrocnemius. A time × age × muscle × velocity repeated measures analysis of variance was used to explore the influence of fatigue on EMD. A significant main effect for time (P = 0.001) indicated that EMD was significantly longer post- compared with pre-fatigue (58.4% increase). A significant time × group interaction effect (P = 0.046) indicated EMD was significantly longer in the U13 age group compared with the U15 (P = 0.011) and U17 (P = 0.021) groups and greater post-fatigue. Soccer-specific fatigue compromised neuromuscular feedback mechanisms and the age-related effects may represent a more compliant muscle-tendon system in younger compared with older girls, increasing risk of injury.


Subject(s)
Anterior Cruciate Ligament Injuries , Muscle Fatigue , Muscle, Skeletal/physiopathology , Soccer/injuries , Youth Sports/injuries , Adolescent , Child , Electromyography , Exercise Test , Feedback, Physiological , Female , Humans , Knee Joint/physiopathology , Neuromuscular Junction/physiology , Risk Factors , Soccer/physiology , Time Factors
3.
J Sports Med Phys Fitness ; 51(4): 595-602, 2011 Dec.
Article in English | MEDLINE | ID: mdl-22212261

ABSTRACT

AIM: The purpose of this study was to determine from a range of vertical jump and rebound tests, which were the most suitable to measure different forms of stretch-shortening cycle function, and whether such tests could be used interchangeably. METHODS: Two hundred and fifty male youths (age, 12.26 ± 2.94 years; body mass, 47.11 ± 16.91 kg; standing height, 152.98 ± 17.40 cm; and sitting height, 76.89 ± 9.32 cm) were tested for squat and countermovement jump height, reactive strength index (during a maximal hopping test), and leg stiffness (during a sub-maximal hopping test). Stepwise multiple regressions were used to examine the relationships between different measures of SSC function in youths. RESULTS: Absolute leg stiffness was best predicted by body mass (r2=62%), however the explained variance was significantly reduced when normalized to leg length and body mass (r2=15.3%). Squat jump height best explained the total variance for reactive strength index (r2=53.9%), whilst countermovement and squat jump height were the best predictors of each other (r2=86%). CONCLUSION: Results would suggest that the test protocols used in this study were representative of different forms of SSC performance. Coaches and athletes should take these findings into account when attempting to select the appropriate testing protocols to measure the correct SSC action.


Subject(s)
Exercise Test , Movement/physiology , Muscle Contraction , Muscle, Skeletal/physiology , Reflex, Stretch , Adolescent , Biomechanical Phenomena , Body Weight , Child , Humans , Lower Extremity/physiology , Male , Plyometric Exercise
4.
Biochemistry ; 45(23): 7341-6, 2006 Jun 13.
Article in English | MEDLINE | ID: mdl-16752923

ABSTRACT

In recent years, significant progress has been made in determining the catalytic mechanisms by which base excision repair (BER) DNA glycosylases and glycosylase-abasic site (AP) lyases cleave the glycosyl bond. While these investigations have identified active site residues and active site architectures, few investigations have analyzed postincision turnover events. Previously, we identified a critical residue (His16) in the T4-pyrimidine dimer glycosylase (T4-Pdg) that, when mutated, interferes with enzyme turnover [Meador et al. (2004) J. Biol. Chem. 279, 3348-3353]. To test whether comparable residues and mechanisms might be operative for other BER glycosylase:AP-lyases, molecular modeling studies were conducted comparing the active site regions of T4-Pdg and the Escherichia coli formamidopyrimidine DNA glycosylase (Fpg). These analyses revealed that His71 in Fpg might perform a similar function to His16 in T4-Pdg. Site-directed mutagenesis of the Fpg gene and analyses of the reaction mechanism of the mutant enzyme revealed that the H71A enzyme retained activity on a DNA substrate containing an 8-oxo-7,8-dihydroguanine (8-oxoG) opposite cytosine and DNA containing an AP site. The H71A Fpg mutant was severely compromised in enzyme turnover on the 8-oxoG-C substrate but had turnover rates comparable to that of wild-type Fpg on AP-containing DNA. The similar mutant phenotypes for these two enzymes, despite a complete lack of structural or sequence homology between them, suggest a common mechanism for the rate-limiting step catalyzed by BER glycosylase:AP-lyases.


Subject(s)
DNA-Formamidopyrimidine Glycosylase/metabolism , Base Sequence , Binding Sites , DNA Primers , DNA-Formamidopyrimidine Glycosylase/chemistry , Kinetics , Models, Molecular , Substrate Specificity
5.
Environ Mol Mutagen ; 47(1): 67-70, 2006 Jan.
Article in English | MEDLINE | ID: mdl-16094661

ABSTRACT

Xpc-null (Xpc-/-) mice, deficient in the global genome repair subpathway of nucleotide excision repair (NER-GGR), were exposed by intraperitoneal (i.p.) injection to a 300 mg/kg mutagenic dose of 3,4-epoxy-1-butene (EB), to investigate NER's potential role in repairing butadiene (BD) epoxide DNA lesions. Mutagenic sensitivity was assessed using the Hprt assay. Xpc-/- mice were significantly more sensitive to EB exposure, exhibiting an average 2.8-fold increase in Hprt mutant frequency (MF) relative to those of exposed Xpc+/+ (wild-type) mice. As a positive control for NER-GGR, additional mice were exposed by i.p. injection to a 150 mg/kg mutagenic dose of benzo[a]pyrene (B[a]P). The Xpc-/- mice had MFs 2.9-fold higher than those of exposed Xpc+/+ mice. These results suggest that NER-GGR plays a role in recognizing and repairing some of the DNA adducts formed following in vivo exposure to EB. Additional research is needed to examine the response of Xpc-/- mice, as well as other NER-deficient strains, to inhaled BD. Furthermore, it is likely that alternative DNA repair pathways also are involved in restoring genomic integrity compromised by BD-epoxide DNA damage. Collaborative studies are currently underway to address these critical issues.


Subject(s)
DNA Adducts , DNA-Binding Proteins/deficiency , Epoxy Compounds/toxicity , Hypoxanthine Phosphoribosyltransferase/genetics , Mutagens/toxicity , Animals , Benzo(a)pyrene/toxicity , DNA/genetics , DNA Repair , DNA-Binding Proteins/genetics , Genes, Reporter/genetics , Mice , Mice, Knockout , Mutation
7.
Mutat Res ; 487(3-4): 93-108, 2001 Dec 19.
Article in English | MEDLINE | ID: mdl-11738936

ABSTRACT

Except for the functional groups sited within the major or minor grooves, the bases of B-DNA are quite protected from the external environment. Enzymes that modify the bases often "flip out" the target into an extrahelical position before the chemistry step is carried out. Examples of this mechanism are the base excision repair glycosylases and the restriction enzyme methylases. The question arises about the mechanism of substrate recognition for these enzymes and how closely it is linked to the base flipping step. Molecular dynamics simulations (AMBER, PME electrostatics) of fully solvated, cation neutralized, DNA sequences containing 8-oxoguanine (8OG) and of appropriate normal (control) DNAs have been carried out. The dynamics trajectories were analyzed to identify those properties of the DNA structure in the vicinity of the altered base, or its dynamics, that could contribute to molecular discrimination between substrate and non-substrate DNA sites. The results predict that the FPG enzyme should flip out the cytosine base paired with the scissile 8OG, not the target base itself.


Subject(s)
Computer Simulation , DNA Glycosylases , DNA Repair , DNA/chemistry , Guanine/analogs & derivatives , Guanine/chemistry , Models, Chemical , N-Glycosyl Hydrolases/chemistry , Nucleic Acid Conformation , Binding Sites , DNA/metabolism , DNA Damage , N-Glycosyl Hydrolases/metabolism , Protein Binding , Structure-Activity Relationship , Substrate Specificity
8.
Clin Cancer Res ; 7(12): 4182-94, 2001 Dec.
Article in English | MEDLINE | ID: mdl-11751519

ABSTRACT

CM101, a polysaccharide isolated from the culture medium of Group B streptococcus, a neonatal pathogen, targets pathological angiogenesis and inhibits tumor growth in mice and humans. CM101 also targets neonatal lung and adult sheep lung endothelial cells. A gene encoding a transmembrane protein that interacts with CM101 was isolated from a sheep lung endothelial cell cDNA library. The gene, termed sp55, encodes a 495-amino acid polypeptide. COS-7 cells transfected with a vector containing sp55 express the SP55 protein-bound CM101 in a concentration-dependent manner. Stably transfected CHO cells also bound CM101. The corresponding human gene, hp59, was isolated from a human fetal lung cDNA library and had a predicted identity to SP55 of 86% over 495 amino acids. HP59 protein was shown by immunohistochemistry to be present in the pathological tumor vasculature of the lung, breast, colon, and ovary, but not in the normal vasculature, suggesting that the protein may be critical to pathological angiogenesis. The hp59 gene and/or the HP59 protein was not expressed in a variety of normal tissues, but was significantly expressed in human fetal lung, consistent with the pathophysiology of Group B streptococcus infections in neonates. Mice immunized with HP59 and SP55 peptides showed significant attenuation of tumor growth. Immunization effectively inhibited both the tumor angiogenesis and vasculogenesis processes, as evidenced by lack of both HP59- and CD34-positive vessels. These results and the immunohistochemistry data suggest a therapeutic potential for the CM101 target protein HP59 both as a drug target and as a vaccine against pathoangiogenesis.


Subject(s)
Membrane Proteins/analysis , Pulmonary Circulation/physiology , Amino Acid Sequence , Angiogenesis Inhibitors , Animals , Antineoplastic Agents/pharmacokinetics , Biotinylation , CHO Cells , Carrier Proteins/metabolism , Cell Line , Cells, Cultured , Cricetinae , Endothelium, Vascular , Gene Library , Genomic Library , Humans , Lung , Membrane Glycoproteins , Membrane Proteins/chemistry , Membrane Proteins/genetics , Mice , Molecular Sequence Data , Neovascularization, Pathologic/prevention & control , Organic Anion Transporters , Polysaccharides, Bacterial/metabolism , Promoter Regions, Genetic , Restriction Mapping , Sequence Alignment , Sequence Homology, Amino Acid , Sheep , Symporters , Transfection , von Willebrand Factor/analysis
9.
Chem Res Toxicol ; 14(11): 1482-5, 2001 Nov.
Article in English | MEDLINE | ID: mdl-11712904

ABSTRACT

A DNA duplex containing the primary acrolein adduct, 3-(2-deoxy-beta-D-erythro-pentofuranosyl)-5,6,7,8-tetrahydro-8-hydroxypyrimido[1,2-a]purin-10(3H)-one (2), of deoxyguanosine in a 5'-CpG sequence context spontaneously but reversibly formed an interchain cross-link with the exocyclic amino group of deoxyguanosine in the opposing chain. The linkage was sufficiently stable that the cross-linked duplex could be isolated by HPLC and characterized by MALDI-TOF mass spectrometry. Enzymatic degradation gave bis-nucleoside 6, which was independently prepared by direct reaction of 2 with dGuo.


Subject(s)
Acrolein/chemistry , DNA Adducts/chemistry , Chromatography, High Pressure Liquid , Cross-Linking Reagents , Deoxyguanosine/chemistry , Humans , Magnetic Resonance Spectroscopy , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
10.
Biochemistry ; 40(40): 12150-6, 2001 Oct 09.
Article in English | MEDLINE | ID: mdl-11580290

ABSTRACT

Endonuclease VIII (Nei) is one of three enzymes in Escherichia coli that are involved in base-excision repair of oxidative damage to DNA. We investigated the substrate specificity and excision kinetics of this DNA glycosylase for bases in DNA that have been damaged by free radicals. Two different DNA substrates were prepared by gamma-irradiation of DNA solutions under N(2)O or air, such that they contained a multiplicity of modified bases. Although previous studies on the substrate specificity of Nei had demonstrated activity on several pyrimidine derivatives, this present study demonstrates excision of additional pyrimidine derivatives and a purine-derived lesion, 4,6-diamino-5-formamidopyrimidine, from DNA containing multiple modified bases. Excision was dependent on enzyme concentration, incubation time, and substrate concentration, and followed Michaelis-Menten kinetics. The kinetic parameters also depended on the identity of the individual modified base being removed. Substrates and excision kinetics of Nei and a naturally arising mutant form involving Leu-90-->Ser (L90S-Nei) were compared to those of Escherichia coli endonuclease III (Nth), which had previously been determined under experimental conditions similar to those in this study. This comparison showed that Nei and Nth significantly differ from each other in terms of excision rates, although they have common substrates. The present work extends the substrate specificity of Nei and shows the effect of a single mutation in the nei gene on the specificity of Nei.


Subject(s)
DNA Damage , Endodeoxyribonucleases/metabolism , Escherichia coli Proteins , Escherichia coli/enzymology , DNA Glycosylases , Deoxyribonuclease (Pyrimidine Dimer) , Free Radicals , Kinetics , N-Glycosyl Hydrolases/metabolism , Oxidative Stress , Substrate Specificity
11.
Article in English | MEDLINE | ID: mdl-11554310

ABSTRACT

To understand the structural basis of the recognition and removal of specific mismatched bases in double-stranded DNAs by the DNA repair glycosylase MutY, a series of structural and functional analyses have been conducted. MutY is a 39-kDa enzyme from Escherichia coli, which to date has been refractory to structural determination in its native, intact conformation. However, following limited proteolytic digestion, it was revealed that the MutY protein is composed of two modules, a 26-kDa domain that retains essential catalytic function (designated p26MutY) and a 13-kDa domain that is implicated in substrate specificity and catalytic efficiency. Several structures of the 26-kDa domain have been solved by X-ray crystallographic methods to a resolution of up to 1.2 A. The structure of a catalytically incompetent mutant of p26MutY complexed with an adenine in the substrate-binding pocket allowed us to propose a catalytic mechanism for MutY. Since reporting the structure of p26MutY, significant progress has been made in solving the solution structure of the noncatalytic C-terminal 13-kDa domain of MutY by NMR spectroscopy. The topology and secondary structure of this domain are very similar to that of MutT, a pyrophosphohydrolase. Molecular modeling techniques employed to integrate the two domains of MutY with DNA suggest that MutY can wrap around the DNA and initiate catalysis by potentially flipping adenine and 8-oxoguanine out of the DNA helix.


Subject(s)
Adenine/analogs & derivatives , Bacterial Proteins/physiology , DNA Glycosylases , DNA Repair , Escherichia coli Proteins , Escherichia coli/enzymology , Guanine/analogs & derivatives , N-Glycosyl Hydrolases/physiology , Adenine/metabolism , Amino Acid Sequence , Bacterial Proteins/chemistry , Base Pair Mismatch , Carbon-Oxygen Lyases/chemistry , Carbon-Oxygen Lyases/physiology , Catalysis , Catalytic Domain , DNA Damage , DNA, Bacterial/genetics , DNA, Bacterial/metabolism , DNA-(Apurinic or Apyrimidinic Site) Lyase , Deoxyribonuclease IV (Phage T4-Induced) , Escherichia coli/genetics , Guanine/metabolism , Magnetic Resonance Spectroscopy , Models, Molecular , Molecular Sequence Data , N-Glycosyl Hydrolases/chemistry , Phosphoric Monoester Hydrolases/chemistry , Protein Conformation , Protein Structure, Tertiary , Pyrophosphatases , Sequence Alignment , Sequence Homology, Amino Acid , Structure-Activity Relationship , Substrate Specificity
12.
Nucleic Acids Res ; 29(13): 2802-9, 2001 Jul 01.
Article in English | MEDLINE | ID: mdl-11433026

ABSTRACT

The human MutY homolog, hMYH, is an adenine-specific DNA glycosylase that removes adenines or 2-hydroxyadenines mispaired with guanines or 8-oxoguanines. In order to prevent mutations, this activity must be directed to the newly synthesized strand and not the template strand during DNA synthesis. The subcellular localization and expression of hMYH has been studied in serum-stimulated, proliferating MRC5 cells. Using specific antibodies, we demonstrate that endogenous hMYH protein localized both to nuclei and mitochondria. hMYH in the nuclei is distinctly distributed and co-localized with BrdU at replication foci and with proliferating cell nuclear antigen (PCNA). The levels of hMYH in the nucleus increased 3- to 4-fold during progression of the cell cycle and reached maximum levels in S phase compared to early G(1). Similar results were obtained for PCNA, while there were no notable changes in expression of 8-oxoguanine glycosylase or the human MutT homolog, MTH1, throughout the cell cycle. The cell cycle-dependent expression and localization of hMYH at sites of DNA replication suggest a role for this glycosylase in immediate post-replication DNA base excision repair.


Subject(s)
Adenine/metabolism , Base Pair Mismatch/genetics , Cell Cycle , DNA Glycosylases , DNA Repair Enzymes , DNA Repair/genetics , DNA Replication , Guanine/analogs & derivatives , Guanine/metabolism , N-Glycosyl Hydrolases/metabolism , Blotting, Western , Cell Division , Cell Line , Cell Nucleus/enzymology , Cell Nucleus/metabolism , Cytoplasm/enzymology , Cytoplasm/metabolism , DNA-Formamidopyrimidine Glycosylase , Fluorescent Antibody Technique, Indirect , G1 Phase , Humans , Mitochondria/enzymology , Mitochondria/metabolism , Phosphoric Monoester Hydrolases/metabolism , Proliferating Cell Nuclear Antigen/metabolism , Protein Transport , S Phase , Tumor Cells, Cultured
13.
Nucleic Acids Res ; 29(9): 1967-74, 2001 May 01.
Article in English | MEDLINE | ID: mdl-11328881

ABSTRACT

8-oxoguanine (8-oxoG), induced by reactive oxygen species and arguably one of the most important mutagenic DNA lesions, is prone to further oxidation. Its one-electron oxidation products include potentially mutagenic guanidinohydantoin (Gh) and spiroiminodihydantoin (Sp) because of their mispairing with A or G. All three oxidized base-specific DNA glycosylases of Escherichia coli, namely endonuclease III (Nth), 8-oxoG-DNA glycosylase (MutM) and endonuclease VIII (Nei), excise Gh and Sp, when paired with C or G in DNA, although Nth is less active than the other two. MutM prefers Sp and Gh paired with C (kcat/K(m) of 0.24-0.26 min(-1) x nM(-1)), while Nei prefers G over C as the complementary base (k(cat)/K(m) - 0.15-0.17 min(-1) x nM(-1)). However, only Nei efficiently excises these paired with A. MutY, a 8-oxoG.A(G)-specific A(G)-DNA glycosylase, is inactive with Gh(Sp).A/G-containing duplex oligonucleotide, in spite of specific affinity. It inhibits excision of lesions by MutM from the Gh.G or Sp.G pair, but not from Gh.C and Sp.C pairs. In contrast, MutY does not significantly inhibit Nei for any Gh(Sp) base pair. These results suggest a protective function for MutY in preventing mutation as a result of A (G) incorporation opposite Gh(Sp) during DNA replication.


Subject(s)
DNA Repair , Escherichia coli Proteins , Escherichia coli/enzymology , Guanidines/metabolism , Guanine/analogs & derivatives , Guanine/metabolism , Guanosine/analogs & derivatives , Guanosine/metabolism , Hydantoins/metabolism , N-Glycosyl Hydrolases/metabolism , Spiro Compounds/metabolism , DNA Glycosylases , DNA-Formamidopyrimidine Glycosylase , Deoxyribonuclease (Pyrimidine Dimer) , Electrons , Endodeoxyribonucleases/chemistry , Endodeoxyribonucleases/metabolism , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/pharmacology , Guanidines/chemistry , Guanine/chemistry , Guanosine/chemistry , Hydantoins/chemistry , Kinetics , N-Glycosyl Hydrolases/antagonists & inhibitors , N-Glycosyl Hydrolases/chemistry , Oxidation-Reduction , Protein Binding , Schiff Bases/chemistry , Spiro Compounds/chemistry , Substrate Specificity
14.
J Biol Chem ; 276(26): 24401-8, 2001 Jun 29.
Article in English | MEDLINE | ID: mdl-11323425

ABSTRACT

Chlorella virus PBCV-1 topoisomerase II is the only functional type II enzyme known to be encoded by a virus that infects eukaryotic cells. However, it has not been established whether the protein is expressed following viral infection or whether the enzyme has any catalytic features that distinguish it from cellular type II topoisomerases. Therefore, the present study characterized the physiological expression of PBCV-1 topoisomerase II and individual reaction steps catalyzed by the enzyme. Results indicate that the topoisomerase II gene is widely distributed among Chlorella viruses and that the protein is expressed 60-90 min after viral infection of algal cells. Furthermore, the enzyme has an extremely high DNA cleavage activity that sets it apart from all known eukaryotic type II topoisomerases. Levels of DNA scission generated by the viral enzyme are approximately 30 times greater than those observed with human topoisomerase IIalpha. The high levels of cleavage are not due to inordinately tight enzyme-DNA binding or to impaired DNA religation. Thus, they most likely reflect an elevated forward rate of scission. The robust DNA cleavage activity of PBCV-1 topoisomerase II provides a unique tool for studying the catalytic functions of type II topoisomerases.


Subject(s)
Chlorella/virology , DNA Topoisomerases, Type II/metabolism , Phycodnaviridae/enzymology , Adenosine Triphosphate/metabolism , Antineoplastic Agents/pharmacology , Cations/chemistry , DNA/metabolism , DNA Topoisomerases, Type II/genetics , DNA-Binding Proteins/antagonists & inhibitors , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , Etoposide/pharmacology , Genes, Viral , Humans , RNA, Viral/biosynthesis , Topoisomerase II Inhibitors , Viral Proteins/antagonists & inhibitors , Viral Proteins/genetics , Viral Proteins/metabolism
15.
Nucleic Acids Res ; 29(7): 1484-90, 2001 Apr 01.
Article in English | MEDLINE | ID: mdl-11266550

ABSTRACT

Properties of a mutant bacteriophage T2 DNA [N:(6)-adenine] methyltransferase (T2 Dam MTase) have been investigated for its potential utilization in RecA-assisted restriction endonuclease (RARE) cleavage. Steady-state kinetic analyses with oligonucleotide duplexes revealed that, compared to wild-type T4 Dam, both wild-type T2 Dam and mutant T2 Dam P126S had a 1.5-fold higher k(cat) in methylating canonical GATC sites. Additionally, T2 Dam P126S showed increased efficiencies in methylation of non-canonical GAY sites relative to the wild-type enzymes. In agreement with these steady-state kinetic data, when bacteriophage lambda DNA was used as a substrate, maximal protection from restriction nuclease cleavage in vitro was achieved on the sequences GATC, GATN and GACY, while protection of GACR sequences was less efficient. Collectively, our data suggest that T2 Dam P126S can modify 28 recognition sequences. The feasibility of using the mutant enzyme in RARE cleavage with BCL:I and ECO:RV endonucleases has been shown on phage lambda DNA and with BCL:I and DPN:II endonucleases on yeast chromosomal DNA embedded in agarose.


Subject(s)
DNA Methylation , DNA Restriction Enzymes/metabolism , Rec A Recombinases/metabolism , Site-Specific DNA-Methyltransferase (Adenine-Specific)/metabolism , Bacteriophage lambda/genetics , Base Sequence , Binding Sites , DNA, Fungal/genetics , DNA, Fungal/metabolism , DNA, Viral/genetics , DNA, Viral/metabolism , Mutation , Oligonucleotides/genetics , Oligonucleotides/metabolism , Rec A Recombinases/genetics , Saccharomyces cerevisiae/genetics , Site-Specific DNA-Methyltransferase (Adenine-Specific)/genetics , Viral Proteins
17.
Biochemistry ; 40(2): 561-8, 2001 Jan 16.
Article in English | MEDLINE | ID: mdl-11148051

ABSTRACT

DNA glycosylase and glycosylase/abasic (AP) lyases are the enzymes responsible for initiating the base excision repair pathway by recognizing the damaged target base and catalyzing the breakage of the base-sugar glycosyl bond. The subset of glycosylases that have an associated AP lyase activity also catalyze DNA strand breakage at the resulting or preexisting AP site via a beta-elimination reaction, proceeding from an enzyme-DNA imino intermediate. Two distinct mechanisms have been proposed for the formation of this intermediate. These mechanisms essentially differ in the nature of the first bond broken and the timing of the opening of the deoxyribose ring. The data presented here demonstrate that the combined rate of sugar ring opening and reduction of the sugar is significantly slower than the rate of formation of a T4-pyrimidine dimer glycosylase (T4-pdg)-DNA intermediate. Using a methyl-deoxyribofuranose AP-site analogue that is incapable of undergoing sugar ring opening, it was demonstrated that the T4-pdg reaction can initiate at the ring-closed form, albeit at a drastically reduced rate. T4-pdg preferentially cleaved the beta-anomer of the methyl-deoxyribofuranose AP site analogue. This is consistent with a mechanism in which the methoxy group is backside-displaced by the amino group from the alpha-face of the deoxyribofuranose ring. In addition, studies examining rates of sugar-aldehyde reduction and the sodium borohydride concentration dependence of the rate of formation of the covalent imine intermediate suggest that the reduction of the intermediate is rate-limiting in the reaction.


Subject(s)
Carbon-Oxygen Lyases/chemistry , N-Glycosyl Hydrolases/chemistry , Bacteriophage T4/enzymology , Borohydrides/chemistry , DNA Glycosylases , DNA Repair , DNA-(Apurinic or Apyrimidinic Site) Lyase , Deoxyribonuclease IV (Phage T4-Induced) , Deoxyribonucleosides/chemical synthesis , Dose-Response Relationship, Drug , Hydrolysis , Macromolecular Substances , Oligodeoxyribonucleotides/chemistry , Schiff Bases/chemistry , Thionucleotides/chemical synthesis
18.
J Biol Chem ; 276(4): 2517-22, 2001 Jan 26.
Article in English | MEDLINE | ID: mdl-11062246

ABSTRACT

Yeast DNA polymerase eta can replicate through cis-syn cyclobutane pyrimidine dimers and 8-oxoguanine lesions with the same efficiency and accuracy as replication of an undamaged template. Previously, it has been shown that Escherichia coli DNA polymerases I, II, and III are incapable of bypassing DNA substrates containing N(2)-guanine adducts of stereoisomeric 1,3-butadiene metabolites. Here we showed that yeast polymerase eta replicates DNA containing the monoadducts (S)-butadiene monoepoxide and (S,S)-butadiene diolepoxide N(2)-guanines albeit at an approximately 200-300-fold lower efficiency relative to the control guanine. Interestingly, nucleotide incorporation opposite the (R)-butadiene monoepoxide and the (R,R)-butadiene diolepoxide N(2)-guanines was approximately 10-fold less efficient than incorporation opposite their S stereoisomers. Polymerase eta preferentially incorporates the correct nucleotide opposite and downstream of all four adducts, except that it shows high misincorporation frequencies for elongation of C paired with (R)-butadiene monoepoxide N(2)-guanine. Additionally, polymerase eta does not bypass the (R,R)- and (S,S)-butadiene diolepoxide N(2)-guanine-N(2)-guanine intra- strand cross-links, and replication is completely blocked just prior to the lesion. Collectively, these data suggest that polymerase eta can tolerate the geometric distortions in DNA conferred by the N(2)-guanine butadiene monoadducts but not the intrastrand cross-links.


Subject(s)
Butadienes/metabolism , DNA Adducts/metabolism , DNA-Directed DNA Polymerase/metabolism , Guanine/analogs & derivatives , Saccharomyces cerevisiae/enzymology , Carcinogens/metabolism , DNA Replication , Epoxy Compounds/metabolism , Glycols/metabolism , Stereoisomerism
19.
Environ Mol Mutagen ; 38(4): 292-6, 2001.
Article in English | MEDLINE | ID: mdl-11774359

ABSTRACT

The National Toxicology Program has recently classified 1,3-butadiene (BD) as a human carcinogen. BD is metabolized to the intermediates 1,2-epoxy-3-butene (EB), 1,2:3,4-diepoxybutane (DEB), and 1,2-dihydroxy-3,4-epoxybutane. All three metabolites have been implicated in producing specific types of DNA damage and as genotoxic agents in mice, rat, and human cells. This study has focused on EB-induced N1 deoxyinosine lesions that are formed by deamination of deoxyadenosine following reaction of the epoxide at the N(1) position. The R and S stereoisomers of this lesion were incorporated site-specifically within the context of an 11-mer oligodeoxynucleotide, incorporated into M13mp7L2 single-stranded DNA, and transfected into E. coli. Both stereoisomers modestly reduced plaque-forming ability, indicating that neither lesion presents a base modification that cannot be bypassed. The resulting plaques were assessed for point mutations using differential hybridization and DNA sequence analyses. The overall mutagenic spectrum revealed that the N1 adducts were highly mutagenic (approximately 90% per replication cycle), causing a predominance of A --> G transitions.


Subject(s)
DNA Adducts , Epoxy Compounds/toxicity , Inosine/analogs & derivatives , Mutagens/toxicity , Point Mutation , Adenine/chemistry , Base Pairing , DNA, Single-Stranded/chemistry , Escherichia coli/genetics , Inosine/chemistry , Isomerism , Mutagenicity Tests
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