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1.
Front Digit Health ; 6: 1387139, 2024.
Article in English | MEDLINE | ID: mdl-38983792

ABSTRACT

Introduction: Patient-reported outcomes measures (PROMs) are valuable tools for assessing health-related quality of life and treatment effectiveness in individuals with traumatic brain injuries (TBIs). Understanding the experiences of individuals with TBIs in completing PROMs is crucial for improving their utility and relevance in clinical practice. Methods: Sixteen semi-structured interviews were conducted with a sample of individuals with TBIs. The interviews were transcribed verbatim and analysed using Thematic Analysis (TA) and Natural Language Processing (NLP) techniques to identify themes and emotional connotations related to the experiences of completing PROMs. Results: The TA of the data revealed six key themes regarding the experiences of individuals with TBIs in completing PROMs. Participants expressed varying levels of understanding and engagement with PROMs, with factors such as cognitive impairments and communication difficulties influencing their experiences. Additionally, insightful suggestions emerged on the barriers to the completion of PROMs, the factors facilitating it, and the suggestions for improving their contents and delivery methods. The sentiment analyses performed using NLP techniques allowed for the retrieval of the general sentimental and emotional "tones" in the participants' narratives of their experiences with PROMs, which were mainly characterised by low positive sentiment connotations. Although mostly neutral, participants' narratives also revealed the presence of emotions such as fear and, to a lesser extent, anger. The combination of a semantic and sentiment analysis of the experiences of people with TBIs rendered valuable information on the views and emotional responses to different aspects of the PROMs. Discussion: The findings highlighted the complexities involved in administering PROMs to individuals with TBIs and underscored the need for tailored approaches to accommodate their unique challenges. Integrating TA-based and NLP techniques can offer valuable insights into the experiences of individuals with TBIs and enhance the interpretation of qualitative data in this population.

2.
Aging (Albany NY) ; 162024 Jun 29.
Article in English | MEDLINE | ID: mdl-38976646

ABSTRACT

Idiopathic pulmonary fibrosis (IPF) is an age-related disease with poor prognosis and limited therapeutic options. Activation of lung fibroblasts and differentiation to myofibroblasts are the principal effectors of disease pathology, but damage and senescence of alveolar epithelial cells, specifically type II (ATII) cells, has recently been identified as a potential trigger event for the progressive disease cycle. Targeting ATII senescence and the senescence-associated secretory phenotype (SASP) is an attractive therapeutic strategy; however, translatable primary human cell models that enable mechanistic studies and drug development are lacking. Here, we describe a novel system of conditioned medium (CM) transfer from bleomycin-induced senescent primary alveolar epithelial cells (AEC) onto normal human lung fibroblasts (NHLF) that demonstrates an enhanced fibrotic transcriptional and secretory phenotype compared to non-senescent AEC CM treatment or direct bleomycin damage of the NHLFs. In this system, the bleomycin-treated AECs exhibit classical hallmarks of cellular senescence, including SASP and a gene expression profile that resembles aberrant epithelial cells of the IPF lung. Fibroblast activation by CM transfer is attenuated by pre-treatment of senescent AECs with the senolytic Navitoclax and AD80, but not with the standard of care agent Nintedanib or senomorphic JAK-targeting drugs (e.g., ABT-317, ruxolitinib). This model provides a relevant human system for profiling novel senescence-targeting therapeutics for IPF drug development.

3.
Cells ; 13(5)2024 Mar 02.
Article in English | MEDLINE | ID: mdl-38474402

ABSTRACT

The extracellular matrix (ECM) provides structural support for tissues and regulatory signals for resident cells. ECM requires a careful balance between protein accumulation and degradation for homeostasis. Disruption of this balance can lead to pathological processes such as fibrosis in organs across the body. Post-translational crosslinking modifications to ECM proteins such as collagens alter ECM structure and function. Dysregulation of crosslinking enzymes as well as changes in crosslinking composition are prevalent in fibrosis. Because of the crucial roles these ECM crosslinking pathways play in disease, the enzymes that govern crosslinking events are being explored as therapeutic targets for fibrosis. Here, we review in depth the molecular mechanisms underlying ECM crosslinking, how ECM crosslinking contributes to fibrosis, and the therapeutic strategies being explored to target ECM crosslinking in fibrosis to restore normal tissue structure and function.


Subject(s)
Collagen , Extracellular Matrix , Humans , Extracellular Matrix/metabolism , Fibrosis , Collagen/metabolism , Extracellular Matrix Proteins/metabolism
4.
J Proteome Res ; 2024 Feb 05.
Article in English | MEDLINE | ID: mdl-38315831

ABSTRACT

The extracellular matrix (ECM) is a complex assembly of proteins that provide interstitial scaffolding and elastic recoil for human lungs. The pulmonary extracellular matrix is increasingly recognized as an independent bioactive entity, by creating biochemical and mechanical signals that influence disease pathogenesis, making it an attractive therapeutic target. However, the pulmonary ECM proteome ("matrisome") remains challenging to analyze by mass spectrometry due to its inherent biophysical properties and relatively low abundance. Here, we introduce a strategy designed for rapid and efficient characterization of the human pulmonary ECM using the photocleavable surfactant Azo. We coupled this approach with trapped ion mobility MS with diaPASEF to maximize the depth of matrisome coverage. Using this strategy, we identify nearly 400 unique matrisome proteins with excellent reproducibility that are known to be important in lung biology, including key core matrisome proteins.

5.
Cell Genom ; 4(1): 100471, 2024 Jan 10.
Article in English | MEDLINE | ID: mdl-38190100

ABSTRACT

PBRM1 is frequently mutated in cancers of epithelial origin. How PBRM1 regulates normal epithelial homeostasis, prior to cancer initiation, remains unclear. Here, we show that PBRM1's gene regulatory roles differ drastically between cell states, leveraging human skin epithelium (epidermis) as a research platform. In progenitors, PBRM1 predominantly functions to repress terminal differentiation to sustain progenitors' regenerative potential; in the differentiation state, however, PBRM1 switches toward an activator. Between these two cell states, PBRM1 retains its genomic binding but associates with differential interacting proteins. Our targeted screen identified the E3 SUMO ligase PIAS1 as a key interactor. PIAS1 co-localizes with PBRM1 on chromatin to directly repress differentiation genes in progenitors, and PIAS1's chromatin binding drastically diminishes in differentiation. Furthermore, SUMOylation contributes to PBRM1's repressive function in progenitor maintenance. Thus, our findings highlight PBRM1's cell-state-specific regulatory roles influenced by its protein interactome despite its stable chromatin binding.


Subject(s)
Multiomics , Ubiquitin-Protein Ligases , Humans , Ubiquitin-Protein Ligases/genetics , Gene Expression Regulation , Sumoylation , Chromatin/genetics , DNA-Binding Proteins/genetics , Transcription Factors/genetics , Small Ubiquitin-Related Modifier Proteins/genetics , Protein Inhibitors of Activated STAT/genetics
6.
Mycologia ; 116(1): 170-183, 2024.
Article in English | MEDLINE | ID: mdl-38032605

ABSTRACT

A new genus and species of myxomycete, Tasmaniomyxa umbilicata, is described based on numerous observations in Tasmania and additional records from southeastern Australia and New Zealand. The new taxon is characterized by an unusual combination of characters from two families: Lamprodermataceae and Didymiaceae. With Lamprodermataceae the species shares limeless sporocarps, a shining membranous peridium, an epihypothallic stalk, and a cylindrical columella. Like Didymiaceae, it has a soft, flaccid, sparsely branched capillitium, with rough tubular threads that contain fusiform nodes and are firmly connected to the peridium. Other characters of T. umbilicata that also occur in many Didymiaceae are the peridium dehiscing into petaloid lobes, the yellow, motile plasmodium, and the spores ornamented with larger, grouped and smaller, scattered warts. The transitional position of the new taxon is reflected by a three-gene phylogeny, which places T. umbilicata at the base of the branch of all lime-containing Physarales, thus justifying its description as a monotypic genus.


Subject(s)
Myxomycetes , Physarida , Humans , Myxomycetes/genetics , Tasmania , Spores, Protozoan , Australia , Phylogeny
7.
Commun Biol ; 6(1): 664, 2023 06 23.
Article in English | MEDLINE | ID: mdl-37353594

ABSTRACT

Self-renewing somatic tissues rely on progenitors to support the continuous tissue regeneration. The gene regulatory network maintaining progenitor function remains incompletely understood. Here we show that NUP98 and RAE1 are highly expressed in epidermal progenitors, forming a separate complex in the nucleoplasm. Reduction of NUP98 or RAE1 abolishes progenitors' regenerative capacity, inhibiting proliferation and inducing premature terminal differentiation. Mechanistically, NUP98 binds on chromatin near the transcription start sites of key epigenetic regulators (such as DNMT1, UHRF1 and EZH2) and sustains their expression in progenitors. NUP98's chromatin binding sites are co-occupied by HDAC1. HDAC inhibition diminishes NUP98's chromatin binding and dysregulates NUP98 and RAE1's target gene expression. Interestingly, HDAC inhibition further induces NUP98 and RAE1 to localize interdependently to the nucleolus. These findings identified a pathway in progenitor maintenance, where HDAC activity directs the high levels of NUP98 and RAE1 to directly control key epigenetic regulators, escaping from nucleolar aggregation.


Subject(s)
Chromatin , Nucleocytoplasmic Transport Proteins , Nucleocytoplasmic Transport Proteins/chemistry , Nucleocytoplasmic Transport Proteins/genetics , Nucleocytoplasmic Transport Proteins/metabolism , Chromatin/genetics , Nuclear Matrix-Associated Proteins/chemistry , Nuclear Matrix-Associated Proteins/genetics , Nuclear Matrix-Associated Proteins/metabolism , Binding Sites
8.
Nat Commun ; 13(1): 4408, 2022 07 29.
Article in English | MEDLINE | ID: mdl-35906225

ABSTRACT

Progenitors in epithelial tissues, such as human skin epidermis, continuously make fate decisions between self-renewal and differentiation. Here we show that the Super Elongation Complex (SEC) controls progenitor fate decisions by directly suppressing a group of "rapid response" genes, which feature high enrichment of paused Pol II in the progenitor state and robust Pol II elongation in differentiation. SEC's repressive role is dependent on the AFF1 scaffold, but not AFF4. In the progenitor state, AFF1-SEC associates with the HEXIM1-containing inactive CDK9 to suppress these rapid-response genes. A key rapid-response SEC target is ATF3, which promotes the upregulation of differentiation-activating transcription factors (GRHL3, OVOL1, PRDM1, ZNF750) to advance terminal differentiation. SEC peptidomimetic inhibitors or PKC signaling activates CDK9 and rapidly induces these transcription factors within hours in keratinocytes. Thus, our data suggest that the activity switch of SEC-associated CDK9 underlies the initial processes bifurcating progenitor fates between self-renewal and differentiation.


Subject(s)
Positive Transcriptional Elongation Factor B , Transcriptional Elongation Factors , Cyclin-Dependent Kinase 9/genetics , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , Epidermis/metabolism , Humans , Positive Transcriptional Elongation Factor B/metabolism , RNA Polymerase II , RNA-Binding Proteins , Transcription Factors/genetics , Transcriptional Elongation Factors/metabolism , Tumor Suppressor Proteins
9.
J Clin Invest ; 132(3)2022 02 01.
Article in English | MEDLINE | ID: mdl-34905516

ABSTRACT

Desmoglein 1 (Dsg1) is a cadherin restricted to stratified tissues of terrestrial vertebrates, which serve as essential physical and immune barriers. Dsg1 loss-of-function mutations in humans result in skin lesions and multiple allergies, and isolated patient keratinocytes exhibit increased proallergic cytokine expression. However, the mechanism by which genetic deficiency of Dsg1 causes chronic inflammation is unknown. To determine the systemic response to Dsg1 loss, we deleted the 3 tandem Dsg1 genes in mice. Whole transcriptome analysis of embryonic Dsg1-/- skin showed a delay in expression of adhesion/differentiation/keratinization genes at E17.5, a subset of which recovered or increased by E18.5. Comparing epidermal transcriptomes from Dsg1-deficient mice and humans revealed a shared IL-17-skewed inflammatory signature. Although the impaired intercellular adhesion observed in Dsg1-/- mice resembles that resulting from anti-Dsg1 pemphigus foliaceus antibodies, pemphigus skin lesions exhibit a weaker IL-17 signature. Consistent with the clinical importance of these findings, treatment of 2 Dsg1-deficient patients with an IL-12/IL-23 antagonist originally developed for psoriasis resulted in improvement of skin lesions. Thus, beyond impairing the physical barrier, loss of Dsg1 function through gene mutation results in a psoriatic-like inflammatory signature before birth, and treatment with a targeted therapy significantly improved skin lesions in patients.


Subject(s)
Desmoglein 1/immunology , Desmosomes/immunology , Keratinocytes/immunology , Pemphigus/immunology , Th17 Cells/immunology , Animals , Desmoglein 1/genetics , Desmosomes/genetics , Mice , Pemphigus/genetics
10.
Blood ; 138(10): 885-897, 2021 09 09.
Article in English | MEDLINE | ID: mdl-34189583

ABSTRACT

Intracerebral hemorrhage (ICH) has a devastating impact on the neonatal population. Whether thrombocytopenia is sufficient to cause ICH in neonates is still being debated. In this study, we comprehensively investigated the consequences of severe thrombocytopenia on the integrity of the cerebral vasculature by using 2 orthogonal approaches: by studying embryogenesis in the Nfe2-/- mouse line and by using biologics (anti-GP1Bα antibodies) to induce severe thrombocytopenia at defined times during development. By using a mouse model, we acquired data demonstrating that platelets are required throughout fetal development and into neonatal life for maintaining the integrity of the cerebral vasculature to prevent hemorrhage and that the location of cerebral hemorrhage is dependent on when thrombocytopenia occurs during development. Importantly, this study demonstrates that fetal and neonatal thrombocytopenia-associated ICH occurs within regions of the brain which, in humans, could lead to neurologic damage.


Subject(s)
Cerebral Hemorrhage/metabolism , Fetus/metabolism , Thrombocytopenia/metabolism , Animals , Animals, Newborn , Cerebral Hemorrhage/genetics , Cerebral Hemorrhage/pathology , Fetus/pathology , Mice , Mice, Knockout , Patient Acuity , Thrombocytopenia/genetics , Thrombocytopenia/pathology
11.
Nat Commun ; 12(1): 448, 2021 01 19.
Article in English | MEDLINE | ID: mdl-33469008

ABSTRACT

In self-renewing somatic tissue such as skin epidermis, terminal differentiation genes must be suppressed in progenitors to sustain regenerative capacity. Here we show that hundreds of intronic polyadenylation (IpA) sites are differentially used during keratinocyte differentiation, which is accompanied by downregulation of the Cleavage and Polyadenylation Specificity Factor (CPSF) complex. Sustained CPSF expression in undifferentiated keratinocytes requires the contribution from the transcription factor MYC. In keratinocytes cultured in undifferentiation condition, CSPF knockdown induces premature differentiation and partially affects dynamically used IpA sites. These sites include an IpA site located in the first intron of the differentiation activator GRHL3. CRISPR knockout of GRHL3 IpA increased full-length GRHL3 mRNA expression. Using a targeted genetic screen, we identify that HNRNPA3 interacts with CPSF and enhances GRHL3 IpA. Our data suggest a model where the interaction between CPSF and RNA-binding proteins, such as HNRNPA3, promotes site-specific IpA and suppresses premature differentiation in progenitors.


Subject(s)
Cleavage And Polyadenylation Specificity Factor/metabolism , DNA-Binding Proteins/metabolism , Heterogeneous-Nuclear Ribonucleoprotein Group A-B/metabolism , Keratinocytes/physiology , Re-Epithelialization/genetics , Stem Cells/physiology , Transcription Factors/metabolism , CRISPR-Cas Systems/genetics , Cell Differentiation/genetics , Cell Self Renewal/genetics , Cleavage And Polyadenylation Specificity Factor/genetics , DNA-Binding Proteins/genetics , Gene Expression Regulation , Gene Knockdown Techniques , Gene Knockout Techniques , HEK293 Cells , Heterogeneous-Nuclear Ribonucleoprotein Group A-B/genetics , Humans , Introns/genetics , Polyadenylation/genetics , Primary Cell Culture , Transcription Factors/genetics
12.
Clin J Pain ; 38(3): 189-196, 2021 12 30.
Article in English | MEDLINE | ID: mdl-34974512

ABSTRACT

OBJECTIVES: We aimed to determine the feasibility of virtual reality (VR) distraction for children with cancer undergoing subcutaneous port (SCP) access. We also aimed to estimate preliminary treatment effects of VR compared with an active distraction control (iPad). MATERIALS AND METHODS: A single-site pilot randomized controlled trial comparing VR to iPad distraction was conducted. Eligible children and adolescents were aged 8 to 18 years undergoing treatment for cancer with upcoming SCP needle insertions. Intervention acceptability was evaluated by child, parent, and nurse self-report. Preliminary effectiveness outcomes included child-reported pain intensity, distress, and fear. Preliminary effectiveness was determined using logistic regression models with outcomes compared between groups using preprocedure scores as covariates. RESULTS: Twenty participants (mean age 12 y) were randomized to each group. The most common diagnosis was acute lymphocytic leukemia (n=23, 58%). Most eligible children and adolescents (62%) participated, and 1 withdrew after randomization to the iPad group. Nurses, parents, and children reported the interventions in both groups to be acceptable, with the VR participants reporting significantly higher immersion in the distraction environment (P=0.0318). Although not statistically significant, more VR group participants indicated no pain (65% vs. 45%) and no distress (80% vs. 47%) during the procedure compared with the iPad group. Fear was similar across groups, with ~60% of the sample indicating no fear. DISCUSSION: VR was feasible and acceptable to implement as an intervention during SCP access. Preliminary effectiveness results indicate that VR may reduce distress and distress compared with iPad distraction. These data will inform design of a future full-scale randomized controlled trial.


Subject(s)
Neoplasms , Pain, Procedural , Virtual Reality , Adolescent , Child , Humans , Neoplasms/therapy , Pain Measurement , Pain, Procedural/prevention & control , Pilot Projects
13.
Oncogenesis ; 9(5): 50, 2020 May 15.
Article in English | MEDLINE | ID: mdl-32415090

ABSTRACT

Aberrant expression of protein arginine methyltransferases (PRMTs) has been implicated in a number of cancers, making PRMTs potential therapeutic targets. But it remains not well understood how PRMTs impact specific oncogenic pathways. We previously identified PRMTs as important regulators of cell growth in neuroblastoma, a deadly childhood tumor of the sympathetic nervous system. Here, we demonstrate a critical role for PRMT1 in neuroblastoma cell survival. PRMT1 depletion decreased the ability of murine neuroblastoma sphere cells to grow and form spheres, and suppressed proliferation and induced apoptosis of human neuroblastoma cells. Mechanistic studies reveal the prosurvival factor, activating transcription factor 5 (ATF5) as a downstream effector of PRMT1-mediated survival signaling. Furthermore, a diamidine class of PRMT1 inhibitors exhibited anti-neuroblastoma efficacy both in vitro and in vivo. Importantly, overexpression of ATF5 rescued cell apoptosis triggered by PRMT1 inhibition genetically or pharmacologically. Taken together, our findings shed new insights into PRMT1 signaling pathway, and provide evidence for PRMT1 as an actionable therapeutic target in neuroblastoma.

14.
PLoS One ; 15(3): e0230007, 2020.
Article in English | MEDLINE | ID: mdl-32155198

ABSTRACT

Native bees provide essential pollination services in both natural and managed ecosystems. However, declines in native bee species highlight the need for increased understanding of land management methods that can promote healthy, persistent populations and diverse communities. This can be challenging and costly using traditional scientific methods, but citizen science can overcome many limitations. In this study, we examined the distribution and abundance of an agriculturally important wild bee species, the squash bee (Eucera (Peponapis) pruinosa, Hymenoptera: Apidae). They are ground nesting, specialist bees that depend on cultivated varieties of Cucurbita (squash, pumpkins, gourds). The intimate relationship between squash bees and their host plants suggests that they are likely sensitive to farm management practices, particularly those that disturb the soil. In this study, citizen scientists across Michigan used a survey to submit field management and bee observation data. Survey results indicated that squash bees occupy a wide geographic range and are more abundant in farms with reduced soil disturbance. Citizen science provided an inexpensive and effective method for examining impacts of farm management practices on squash bees and could be a valuable tool for monitoring and conserving other native pollinators.


Subject(s)
Agriculture , Citizen Science , Pollination , Soil , Animals , Bees/physiology , Cucurbita/physiology , Ecosystem , Statistics as Topic , Surveys and Questionnaires
15.
Development ; 146(19)2019 09 30.
Article in English | MEDLINE | ID: mdl-31570369

ABSTRACT

The BAF (SWI/SNF) chromatin remodeling complex plays a crucial role in modulating spatiotemporal gene expression during mammalian development. Although its remodeling activity was characterized in vitro decades ago, the complex actions of BAF in vivo have only recently begun to be unraveled. In living cells, BAF only binds to and remodels a subset of genomic locations. This selectivity of BAF genomic targeting is crucial for cell-type specification and for mediating precise responses to environmental signals. Here, we provide an overview of the distinct molecular mechanisms modulating BAF chromatin binding, including its combinatory assemblies, DNA/histone modification-binding modules and post-translational modifications, as well as its interactions with proteins, RNA and lipids. This Review aims to serve as a primer for future studies to decode the actions of BAF in developmental processes.


Subject(s)
Chromatin/metabolism , Chromosomal Proteins, Non-Histone/metabolism , Embryonic Development/genetics , Genome , Animals , Gene Expression Regulation, Developmental , Humans , Transcription Factors/metabolism
16.
Annu Rev Genet ; 53: 117-147, 2019 12 03.
Article in English | MEDLINE | ID: mdl-31537104

ABSTRACT

Mammalian prion diseases are a group of neurodegenerative conditions caused by infection of the central nervous system with proteinaceous agents called prions, including sporadic, variant, and iatrogenic Creutzfeldt-Jakob disease; kuru; inherited prion disease; sheep scrapie; bovine spongiform encephalopathy; and chronic wasting disease. Prions are composed of misfolded and multimeric forms of the normal cellular prion protein (PrP). Prion diseases require host expression of the prion protein gene (PRNP) and a range of other cellular functions to support their propagation and toxicity. Inherited forms of prion disease are caused by mutation of PRNP, whereas acquired and sporadically occurring mammalian prion diseases are controlled by powerful genetic risk and modifying factors. Whereas some PrP amino acid variants cause the disease, others confer protection, dramatically altered incubation times, or changes in the clinical phenotype. Multiple mechanisms, including interference with homotypic protein interactions and the selection of the permissible prion strains in a host, play a role. Several non-PRNP factors have now been uncovered that provide insights into pathways of disease susceptibility or neurotoxicity.


Subject(s)
Mammals/genetics , Prion Diseases/genetics , Prion Proteins/genetics , Animals , Cattle , Disease Models, Animal , Genetic Association Studies , Genetic Predisposition to Disease , Genetic Testing , Goats/genetics , Humans , Mice , Polymorphism, Genetic , Prion Diseases/etiology , Prion Proteins/metabolism , Selection, Genetic , Sheep/genetics
17.
Curr Protoc Cell Biol ; 84(1): e89, 2019 09.
Article in English | MEDLINE | ID: mdl-31483109

ABSTRACT

Chromatin-associated proteins are instrumental for controlling spatiotemporal gene expression. Determining where these proteins bind across the genome is critical for understanding gene regulation. A widely used technique at present is ChIP-seq, which leverages chromatin fragmentation, antibody-mediated enrichment, next-generation sequencing, and data analysis to uncover the genomic sequences and patterns of protein-DNA interactions. In this article, we will provide an overview of how ChIP-seq was developed, the key elements of the experimentation and data analysis pipeline, and the recent variations that push the boundaries of precision and cell number requirements. We will also briefly discuss how future development of ChIP-seq may further advance our understanding of chromatin biology. © 2019 by John Wiley & Sons, Inc.


Subject(s)
Chromatin Immunoprecipitation Sequencing , Chromatin/metabolism , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , Genomics/methods , Animals , Binding Sites , Chromatin Assembly and Disassembly , Gene Expression Regulation , Humans , Transcription Factors/genetics , Transcription Factors/metabolism
18.
Can J Pain ; 2(1): 280-291, 2018.
Article in English | MEDLINE | ID: mdl-35005385

ABSTRACT

BACKGROUND: Young children are at risk for poorly managed pain after surgery, with significant negative consequence to their quality of life and health outcomes. Mobile applications offer a highly accessible, engaging, and interactive medium to improve pain assessment and management; however, they generally lack scientific foundation or support. AIMS: The aims of this study were to describe a successful parent-science partnership in the development and testing of Achy Penguin, a parent-developed iOS app to help assess and manage acute pain in young children, and to evaluate and refine the usability of Achy Penguin in young children with acute postoperative pain. METHODS: Three cycles of iterative usability testing were conducted with 20 4- to 7-year-old children (M = 5.8 years) in hospital who had recently undergone surgery (n = 6-7 children/cycle). Semistructured qualitative interviews were analyzed using simple content analysis. RESULTS: Feedback from children and further integration of evidence-based pediatric pain knowledge led to refinements in app pain assessment and management content, as well as app flow and functionality. Changes improved children's ease of use and understanding and satisfaction by simplifying language in app instructions and content, adding audio and pictorial instructions, and increasing the engagement, interactiveness, immersiveness, and general appeal of pain management strategies. CONCLUSIONS: This article showcases the value of collaborative partnerships between various stakeholders (parents, app developers, and researcher/health care providers) to address gaps in pediatric pain care. The Achy Penguin app shows promise for improving pain assessment and management in young children, although further evaluation of app effectiveness and implementation is warranted.


Contexte: Les jeunes enfants sont à risque d'une mauvaise prise en charge de leur douleur après une chirurgie, ce qui entraîne des conséquences négatives sur leur qualité de vie et leurs issues de santé. Les applications mobiles sont un médium très accessible, convivial et interactif pour améliorer l'évaluation et la prise en charge de la douleur. Toutefois, elles n'ont généralement pas de soutien ou de fondements scientifiques.Buts: Décrire un partenariat parent-science réussi qui avait pour but de développer et de tester Achy Penguin, une application iOS développée avec l'aide des parents pour faciliter l'évaluation et la prise en charge de la douleur aigue chez les jeunes enfants, ainsi que pour évaluer et perfectionner la facilité d'utilisation de Achy Penguin chez les jeunes enfants souffrant de douleur postopératoire aiguë.Méthodes: Trois cycles itératifs de tests portant sur la facilité d'utilisation ont été menés auprès de 20 enfants âgés de quatre à sept ans (M = 5,8 ans) à l'hôpital qui avaient été soumis à une chirurgie récemment (n = 6 ­ 7 enfants/cycle). Des entrevues qualitatives semi-structurées ont été analysées à l'aide d'une analyse de contenu simple.Résultats: La rétroaction provenant des enfants et une plus grande intégration des connaissances en matière de douleur pédiatrique fondées sur des données probantes ont donné lieu à une amélioration du contenu sur l'évaluation et la prise en charge de la douleurConclusions: Cet article démontre la valeur des partenariats collaboratifs entre différentes parties prenantes (parents, développeurs d'applications, chercheurs et prestataires de soins de santé) afin de combler les lacunes existantes dans les soins pédiatriques pour traiter la douleur. L'application Achy Penguin est prometteuse pour améliorer l'évaluation et la prise en charge de la douleur chez les jeunes enfants, bien qu'une évaluation plus poussée de son efficacité et de sa mise en oeuvre soit nécessaire.

19.
Hum Vaccin Immunother ; 13(11): 2726-2737, 2017 11 02.
Article in English | MEDLINE | ID: mdl-28949787

ABSTRACT

While broadly neutralizing antibodies (bnAbs) are a promising preventative and therapeutic tool for HIV infection, production is difficult and expensive. Production of antibody-like fragments in bacterial cytoplasm provides a cheaper alternative. This work explored the transplantation of the complementarity determining regions of the anti-HIV bnAbs PGT121 and 10E8 onto a single-chain variable fragment (scFv) scaffold, previously discovered through a novel screening platform. The scaffolded 10E8 scFv, but not the scaffolded PGT121 scFv, was soluble in bacterial cytoplasm, enabling efficient production in bacteria. Three additional multimeric constructs employing the scaffolded 10E8 scFv were also generated and soluble versions produced in bacteria. However, the constructs were found to have substantially lost anti-HIV binding function and had completely abrogated neutralizing activity. Overall, while this study provides a proof-of-concept for anti-HIV bnAb construct production in bacterial cytoplasm, future refinement of these technologies will be required to realize the goal of producing inexpensive and effective bnAb-like tools for the control of HIV.


Subject(s)
Antibodies, Neutralizing/therapeutic use , Bacteria/immunology , HIV Antibodies/therapeutic use , HIV Infections/therapy , Single-Chain Antibodies/immunology , Antibodies, Neutralizing/administration & dosage , Antibodies, Neutralizing/biosynthesis , Escherichia coli/genetics , Escherichia coli/immunology , HIV Antibodies/administration & dosage , HIV Antibodies/biosynthesis , HIV Antibodies/chemistry , HIV Infections/immunology , HIV Infections/prevention & control , HIV Infections/virology , HIV-1/immunology , Humans , Neutralization Tests , Proof of Concept Study , Single-Chain Antibodies/biosynthesis
20.
Sci Transl Med ; 9(402)2017 Aug 09.
Article in English | MEDLINE | ID: mdl-28794282

ABSTRACT

Broadly neutralizing antibodies (BnAbs) protect macaques from cell-free simian/human immunodeficiency virus (SHIV) challenge, but their efficacy against cell-associated SHIV is unclear. Virus in cell-associated format is highly infectious, present in transmission-competent bodily fluids, and potentially capable of evading antibody-mediated neutralization. The PGT121 BnAb, which recognizes an epitope consisting of the V3 loop and envelope glycans, mediates antibody-dependent cellular cytotoxicity and neutralization of cell-to-cell HIV-1 transmission. To evaluate whether a BnAb can prevent infection after cell-associated viral challenge, we infused pigtail macaques with PGT121 or an isotype control and challenged animals 1 hour later intravenously with SHIVSF162P3-infected splenocytes. All five controls had high viremia 1 week after challenge. Three of six PGT121-infused animals were completely protected, two of six animals had a 1-week delay in onset of high viremia, and one animal had a 7-week delay in onset of viremia. The infused antibody had decayed on average to 2.0 µg/ml by 1 week after infusion and was well below 1 µg/ml (range, <0.1 to 0.8 µg/ml) by 8 weeks. The animals with a 1-week delay before high viremia had relatively lower plasma concentrations of PGT121. Transfer of 22 million peripheral blood mononuclear cells (PBMCs) stored at weeks 1 to 4 from the animal with the 7-week delayed onset of viremia into uninfected macaques did not initiate infection. Our results show that HIV-1-specific neutralizing antibodies have partial efficacy against cell-associated virus exposure in macaques. We conclude that sustaining high concentrations of bioavailable BnAb is important for protecting against cell-associated virus.


Subject(s)
Antibodies, Neutralizing/immunology , Simian Acquired Immunodeficiency Syndrome/immunology , Simian Immunodeficiency Virus/immunology , Simian Immunodeficiency Virus/pathogenicity , Animals , Antibody Formation/immunology , Humans , Macaca , Male , Viremia/immunology
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