The better to eat you with: morphological disparity and enamel ultrastructure in odontocetes.

Variations in the shape and size of teeth have been associated with changes in enamel ultrastructure across odontocetes. Characterizing these features in extinct taxa can elucidate their functional morphology and feeding strategy, while also shedding light into macroevolutionary patterns during the evolutionary history of cetaceans. This study aimed to (1) describe the enamel and dentine ultrastructure of the Early Miocene odontocetes Notocetus vanbenedeni and Phoberodon arctirostris from Patagonia (Argentina) and (2) quantify tooth and enamel ultrastructure morphological disparity among odontocetes. Enamel was predominantly prismatic, thin in the anterior tooth of N. vanbenedeni and P. arctirostris; whilst thick on the posterior tooth of N. vanbenedeni. Together with skull morphology, data suggests a raptorial feeding strategy for P. arctirostris and a combination suction feeding method for N. vanbenedeni. Statistical analyses supported these inferences, indicating that enamel characters are useful for paleoecological research. Morphological disparity analyses showed that extant odontocetes occupy a larger morphospace and have more disparate morphologies, whilst extinct odontocetes were more similar among each other than with the extant group. There was no clear phylogenetic-based grouping, suggesting that tooth and enamel ultrastructure disparity were mainly driven by ecological pressures. These results highlight enamel ultrastructure as a source for broader-scale paleoecological studies in cetaceans.

Genomic evidence for homoploid hybrid speciation in a marine mammal apex predator.

Hybridization is widespread and constitutes an important source of genetic variability and evolution. In animals, its role in generating novel and independent lineages (hybrid speciation) has been strongly debated, with only a few cases supported by genomic data. The South American fur seal (SAfs) Arctocephalus australis is a marine apex predator of Pacific and Atlantic waters, with a disjunct set of populations in Peru and Northern Chile [Peruvian fur seal (Pfs)] with controversial taxonomic status. We demonstrate, using complete genome and reduced representation sequencing, that the Pfs is a genetically distinct species with an admixed genome that originated from hybridization between the SAfs and the Galapagos fur seal (Arctocephalus galapagoensis) ~400,000 years ago. Our results strongly support the origin of Pfs by homoploid hybrid speciation over alternative introgression scenarios. This study highlights the role of hybridization in promoting species-level biodiversity in large vertebrates.

Phylogenomic Discordance in the Eared Seals is best explained by Incomplete Lineage Sorting following Explosive Radiation in the Southern Hemisphere.

The phylogeny and systematics of fur seals and sea lions (Otariidae) have long been studied with diverse data types, including an increasing amount of molecular data. However, only a few phylogenetic relationships have reached acceptance because of strong gene-tree species tree discordance. Divergence times estimates in the group also vary largely between studies. These uncertainties impeded the understanding of the biogeographical history of the group, such as when and how trans-equatorial dispersal and subsequent speciation events occurred. Here, we used high-coverage genome-wide sequencing for 14 of the 15 species of Otariidae to elucidate the phylogeny of the family and its bearing on the taxonomy and biogeographical history. Despite extreme topological discordance among gene trees, we found a fully supported species tree that agrees with the few well-accepted relationships and establishes monophyly of the genus Arctocephalus. Our data support a relatively recent trans-hemispheric dispersal at the base of a southern clade, which rapidly diversified into six major lineages between 3 and 2.5 Ma. Otaria diverged first, followed by Phocarctos and then four major lineages within Arctocephalus. However, we found Zalophus to be nonmonophyletic, with California (Zalophus californianus) and Steller sea lions (Eumetopias jubatus) grouping closer than the Galapagos sea lion (Zalophus wollebaeki) with evidence for introgression between the two genera. Overall, the high degree of genealogical discordance was best explained by incomplete lineage sorting resulting from quasi-simultaneous speciation within the southern clade with introgresssion playing a subordinate role in explaining the incongruence among and within prior phylogenetic studies of the family. [Hybridization; ILS; phylogenomics; Pleistocene; Pliocene; monophyly.].

Beam hardening correction tool improves the diagnosis of incipient caries lesions in Micro-CT images.

OBJECTIVE: To evaluate the effect of Beam Hardening Correction tool (BHC) on Micro-CT images used in the diagnosis of incipient caries lesions. METHODS: Six posterior teeth, with 6 sound proximal surfaces and 6 natural white spot lesions, were scanned using a SkyScan1174 device. Each tooth was imaged 16 times in various acquisition parameters, and reconstructed 3 times applying different levels of BHC (0, 15 and 30%). The 288 datasets were analyzed by three examiners. Gold-standard was obtained by microscopic analyses under polarized light. Area under the ROC curve was obtained for each protocol and the BHC parameter was isolated to individually observe the influence of such parameters of reconstruction. RESULTS: Microtomographic images were accurate for the diagnosis of incipient caries lesions even when the BHC tool was not applied. Accuracy was perfect in 50 % of the protocols without BHC. When adding the artefact correction, the number of protocols that reached perfect accuracy increased to 81.25%. No difference was found between the protocols that used 15 or 30% BHC. Statistically significant differences were found only in four comparisons, and on those the images that had BHC were more accurate. Two non-BHC protocols reached accuracy scores of 0.653 and 0.881, and were improved to perfect accuracy with BHC application. CONCLUSION: The use of the BHC tool should be encouraged when using Micro-CT to detect incipient caries lesions, especially when low-quality parameters aiming less acquisition and processing time are used.

Review of thirty-two years of toothed whale strandings in Santa Catarina, southern Brazil (Cetacea: Odontoceti)

Marine mammal strandings provide valuable insights into local biodiversity. Strandings can be caused by both natural and anthropogenic factors. In the state of Santa Catarina, Southern Brazil, organized marine mammal collections started in the 1980s through opportunistic and non-systematic collection efforts, representing a record of over 30 years of marine biodiversity. This study aimed to perform a preliminary review of 32 years of stranding records within this region. The secondary aim was to elucidate the stranding dynamics of the three most commonly recorded species. A total of 460 records were obtained, representing 17 species of odontocetes. The species registered most frequently were the franciscana, Pontoporia blainvillei (Gervais & d' Orbigny, 1844) (n = 173), bottlenose dolphin, Tursiops truncatus (Montagu, 1821) (n = 100), and Guiana dolphin Sotalia guianensis (Van Bénéden, 1864) (n = 97). Most of the stranding records were observed in the second half of the year during the austral winter and spring. The apparent causes of death could not be determined for most of the specimens due to carcass decomposition. For the specimens in which the apparent cause of death could be determined, 27% of the strandings were compatible with anthropogenic interactions. While the focus of this study was a preliminary assessment of stranding data obtained through opportunistic collection, it is evident that future systematic monitoring efforts and stable networks of collaborators will generate more reliable coastal biodiversity inventories and will allow the knowledge of population dynamics of marine mammal species. In particular, for threatened and vulnerable species, or species with poor natural history data, strandings are a fundamental tool for the understanding of marine biodiversity. Ideally, future more refined analyses of stranding data should be used to inform conservation and management policies and to elucidate the biology and ecology of marine and coastal...

Review of thirty-two years of toothed whale strandings in Santa Catarina, southern Brazil (Cetacea: Odontoceti)

Marine mammal strandings provide valuable insights into local biodiversity. Strandings can be caused by both natural and anthropogenic factors. In the state of Santa Catarina, Southern Brazil, organized marine mammal collections started in the 1980s through opportunistic and non-systematic collection efforts, representing a record of over 30 years of marine biodiversity. This study aimed to perform a preliminary review of 32 years of stranding records within this region. The secondary aim was to elucidate the stranding dynamics of the three most commonly recorded species. A total of 460 records were obtained, representing 17 species of odontocetes. The species registered most frequently were the franciscana, Pontoporia blainvillei (Gervais & d' Orbigny, 1844) (n = 173), bottlenose dolphin, Tursiops truncatus (Montagu, 1821) (n = 100), and Guiana dolphin Sotalia guianensis (Van Bénéden, 1864) (n = 97). Most of the stranding records were observed in the second half of the year during the austral winter and spring. The apparent causes of death could not be determined for most of the specimens due to carcass decomposition. For the specimens in which the apparent cause of death could be determined, 27% of the strandings were compatible with anthropogenic interactions. While the focus of this study was a preliminary assessment of stranding data obtained through opportunistic collection, it is evident that future systematic monitoring efforts and stable networks of collaborators will generate more reliable coastal biodiversity inventories and will allow the knowledge of population dynamics of marine mammal species. In particular, for threatened and vulnerable species, or species with poor natural history data, strandings are a fundamental tool for the understanding of marine biodiversity. Ideally, future more refined analyses of stranding data should be used to inform conservation and management policies and to elucidate the biology and ecology of marine and coastal...(AU)

Enamel ultrastructure in fossil cetaceans (Cetacea: Archaeoceti and Odontoceti).

The transition from terrestrial ancestry to a fully pelagic life profoundly altered the body systems of cetaceans, with extreme morphological changes in the skull and feeding apparatus. The Oligocene Epoch was a crucial time in the evolution of cetaceans when the ancestors of modern whales and dolphins (Neoceti) underwent major diversification, but details of dental structure and evolution are poorly known for the archaeocete-neocete transition. We report the morphology of teeth and ultrastructure of enamel in archaeocetes, and fossil platanistoids and delphinoids, ranging from late Oligocene (Waitaki Valley, New Zealand) to Pliocene (Caldera, Chile). Teeth were embedded in epoxy resin, sectioned in cross and longitudinal planes, polished, etched, and coated with gold palladium for scanning electron microscopy (SEM) observation. SEM images showed that in archaeocetes, squalodontids and Prosqualodon (taxa with heterodont and nonpolydont/limited polydont teeth), the inner enamel was organized in Hunter-Schreger bands (HSB) with an outer layer of radial enamel. This is a common pattern in most large-bodied mammals and it is regarded as a biomechanical adaptation related to food processing and crack resistance. Fossil Otekaikea sp. and delphinoids, which were polydont and homodont, showed a simpler structure, with inner radial and outer prismless enamel. Radial enamel is regarded as more wear-resistant and has been retained in several mammalian taxa in which opposing tooth surfaces slide over each other. These observations suggest that the transition from a heterodont and nonpolydont/limited polydont dentition in archaeocetes and early odontocetes, to homodont and polydont teeth in crownward odontocetes, was also linked to a marked simplification in the enamel Schmelzmuster. These patterns probably reflect functional shifts in food processing from shear-and-mastication in archaeocetes and early odontocetes, to pierce-and-grasp occlusion in crownward odontocetes, with the implication of less demanding feeding biomechanics as seen in most extant odontocetes.

Dental wear in dolphins (Cetacea: Delphinidae) from southern Brazil.

(1) Dental wear is a common phenomenon in mammals. Its occurrence is influenced by tooth anatomy, animal physiology, biomechanics and behaviour. So far, investigations of dental wear in cetaceans have been scanty and superficial. We compare the frequencies of occurrence, location and intensity of dental wear in some species of dolphins from southern Brazil, South Atlantic Ocean. (2) Teeth of ten species were evaluated using a stereoscopic microscope to identify wear facets, which were classified according to location, anatomical position and wear intensity. (3) Frequencies of dental wear were high for all species with exception of Delphinus capensis, with less than 50% of teeth worn. Simultaneous wear facets in the apex and lateral of teeth were more common than facets restricted to the apex or lateral faces. Wear on the dental crown was more common, but some species showed less frequent wear down to the cingulum or root level. Superficial wear seems to be the general trend for dolphins, but Stenella coeruleoalba and Pseudorca crassidens showed a higher frequency of severe wear. Only for Tursiops truncatus the frequencies of wear were significantly different between males and females. When considering the ontogeny of dental wear, only for T. truncatus and Stenella frontalis indexes of dental wear were correlated with body length. (4) Whether dental wear has implications or not in fitness and feeding behaviour, severely worn teeth may expose the pulp cavity and increase the susceptibility to local infections.

Dental pathology in dolphins (Cetacea: Delphinidae) from the southern coast of Brazil.

Pathological processes observed in the stomatognathic systems of mammalian species are a useful source of information about the habits, evolution and general health of such animals. Studies of pathological conditions on teeth are common in humans and other primates, but rare in wild animals in general and marine mammals in particular. For cetaceans, previous studies provided scanty records of dental anomalies in a few species. This is the first broad and systematic inventory of dental pathology in dolphins. Specimens stored at scientific collections from the southern coast of Brazil were visually inspected under a stereoscopic microscope using a dental explorer. Diagnosis of lesions and anomalies followed literature descriptions. Abnormalities such as caries-like lesions, mineralized calculus deposits, dental erosion, enamel anomalies (hypoplasia and exogenous pigmentation), root resorption, germination and other shape anomalies, were diagnosed in the delphinids Sotalia guianensis, Delphinus capensis, Stenella frontalis, Stenella coeruleoalba, Lagenodelphis hosei, Pseudorca crassidens, Orcinus orca, Steno bredanensis and Tursiops truncatus. Endogenous causes may be related to the occurrence of certain conditions, but the aetiology of caries-like lesions and calculus accumulation is still unknown for cetaceans. The diagnosis of alveolar anomalies and other bone lesions in specimens with dental pathology lead us to believe these lesions modify the integrity of the periodontal ligament and bony tissues, adding to the burden of morbidity of affected animals.

Numerical anomalies in the dentition of southern fur seals and sea lions (Pinnipedia: Otariidae)

Cases of dental agenesis, supernumerary teeth and dental losses are presented in three species of South American Otariids: Arctocephalus australis (Zimmermann, 1783), A. tropicalis (Gray, 1872) and Otaria flavescens (Shaw, 1800). For the first time, congenital and acquired dental anomalies were comparatively diagnosed in skull samples from southern Brazil and nearby areas. The skulls and mandibles were accessed in the scientific collection of mammals of the Federal University of Santa Catarina, southern Brazil. Agenesis was found only among maxillary post-canine teeth, especially the distal ones (PC/6), due to an evolutionary trend towards reduction of the number of post-canine teeth in this family. Maxillary and mandibular supernumerary teeth were found in A. australis and A. tropicalis, but their positioning is unrelated to cases regarding phylogenetic and evolutionary implications. Dental losses were found in all species and different stages of alveolar obliteration suggest that this process is common in Otariids and does not affect their survival. The investigation of congenital and acquired dental anomalies in pinnipeds can provide information on dental formula evolution in Pinnipeds and in the phylogenetic relationships among Carnivora.

Numerical anomalies in the dentition of southern fur seals and sea lions (Pinnipedia: Otariidae)

Cases of dental agenesis, supernumerary teeth and dental losses are presented in three species of South American Otariids: Arctocephalus australis (Zimmermann, 1783), A. tropicalis (Gray, 1872) and Otaria flavescens (Shaw, 1800). For the first time, congenital and acquired dental anomalies were comparatively diagnosed in skull samples from southern Brazil and nearby areas. The skulls and mandibles were accessed in the scientific collection of mammals of the Federal University of Santa Catarina, southern Brazil. Agenesis was found only among maxillary post-canine teeth, especially the distal ones (PC/6), due to an evolutionary trend towards reduction of the number of post-canine teeth in this family. Maxillary and mandibular supernumerary teeth were found in A. australis and A. tropicalis, but their positioning is unrelated to cases regarding phylogenetic and evolutionary implications. Dental losses were found in all species and different stages of alveolar obliteration suggest that this process is common in Otariids and does not affect their survival. The investigation of congenital and acquired dental anomalies in pinnipeds can provide information on dental formula evolution in Pinnipeds and in the phylogenetic relationships among Carnivora.

Numerical anomalies in the dentition of southern fur seals and sea lions (Pinnipedia: Otariidae)

Cases of dental agenesis, supernumerary teeth and dental losses are presented in three species of South American Otariids: Arctocephalus australis (Zimmermann, 1783), A. tropicalis (Gray, 1872) and Otaria flavescens (Shaw, 1800). For the first time, congenital and acquired dental anomalies were comparatively diagnosed in skull samples from southern Brazil and nearby areas. The skulls and mandibles were accessed in the scientific collection of mammals of the Federal University of Santa Catarina, southern Brazil. Agenesis was found only among maxillary post-canine teeth, especially the distal ones (PC/6), due to an evolutionary trend towards reduction of the number of post-canine teeth in this family. Maxillary and mandibular supernumerary teeth were found in A. australis and A. tropicalis, but their positioning is unrelated to cases regarding phylogenetic and evolutionary implications. Dental losses were found in all species and different stages of alveolar obliteration suggest that this process is common in Otariids and does not affect their survival. The investigation of congenital and acquired dental anomalies in pinnipeds can provide information on dental formula evolution in Pinnipeds and in the phylogenetic relationships among Carnivora.

Numerical anomalies in the dentition of southern fur seals and sea lions (Pinnipedia: Otariidae)

Cases of dental agenesis, supernumerary teeth and dental losses are presented in three species of South American Otariids: Arctocephalus australis (Zimmermann, 1783), A. tropicalis (Gray, 1872) and Otaria flavescens (Shaw, 1800). For the first time, congenital and acquired dental anomalies were comparatively diagnosed in skull samples from southern Brazil and nearby areas. The skulls and mandibles were accessed in the scientific collection of mammals of the Federal University of Santa Catarina, southern Brazil. Agenesis was found only among maxillary post-canine teeth, especially the distal ones (PC/6), due to an evolutionary trend towards reduction of the number of post-canine teeth in this family. Maxillary and mandibular supernumerary teeth were found in A. australis and A. tropicalis, but their positioning is unrelated to cases regarding phylogenetic and evolutionary implications. Dental losses were found in all species and different stages of alveolar obliteration suggest that this process is common in Otariids and does not affect their survival. The investigation of congenital and acquired dental anomalies in pinnipeds can provide information on dental formula evolution in Pinnipeds and in the phylogenetic relationships among Carnivora.

Numerical anomalies in the dentition of southern fur seals and sea lions (Pinnipedia: Otariidae)

Cases of dental agenesis, supernumerary teeth and dental losses are presented in three species of South American Otariids: Arctocephalus australis (Zimmermann, 1783), A. tropicalis (Gray, 1872) and Otaria flavescens (Shaw, 1800). For the first time, congenital and acquired dental anomalies were comparatively diagnosed in skull samples from southern Brazil and nearby areas. The skulls and mandibles were accessed in the scientific collection of mammals of the Federal University of Santa Catarina, southern Brazil. Agenesis was found only among maxillary post-canine teeth, especially the distal ones (PC/6), due to an evolutionary trend towards reduction of the number of post-canine teeth in this family. Maxillary and mandibular supernumerary teeth were found in A. australis and A. tropicalis, but their positioning is unrelated to cases regarding phylogenetic and evolutionary implications. Dental losses were found in all species and different stages of alveolar obliteration suggest that this process is common in Otariids and does not affect their survival. The investigation of congenital and acquired dental anomalies in pinnipeds can provide information on dental formula evolution in Pinnipeds and in the phylogenetic relationships among Carnivora.