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1.
Science ; 351(6270): 275-281, 2016 Jan 15.
Article in English | MEDLINE | ID: mdl-26816379

ABSTRACT

Mitochondria undergo fragmentation in response to electron transport chain (ETC) poisons and mitochondrial DNA-linked disease mutations, yet how these stimuli mechanistically connect to the mitochondrial fission and fusion machinery is poorly understood. We found that the energy-sensing adenosine monophosphate (AMP)-activated protein kinase (AMPK) is genetically required for cells to undergo rapid mitochondrial fragmentation after treatment with ETC inhibitors. Moreover, direct pharmacological activation of AMPK was sufficient to rapidly promote mitochondrial fragmentation even in the absence of mitochondrial stress. A screen for substrates of AMPK identified mitochondrial fission factor (MFF), a mitochondrial outer-membrane receptor for DRP1, the cytoplasmic guanosine triphosphatase that catalyzes mitochondrial fission. Nonphosphorylatable and phosphomimetic alleles of the AMPK sites in MFF revealed that it is a key effector of AMPK-mediated mitochondrial fission.


Subject(s)
AMP-Activated Protein Kinases/metabolism , Energy Metabolism , Mitochondria/physiology , Mitochondrial Dynamics , Stress, Physiological , AMP-Activated Protein Kinases/chemistry , AMP-Activated Protein Kinases/genetics , Adenosine Monophosphate/metabolism , Amino Acid Motifs , Cell Line, Tumor , Cytoplasm/enzymology , Dactinomycin/analogs & derivatives , Dactinomycin/pharmacology , Dynamins , Enzyme Activation , GTP Phosphohydrolases/genetics , GTP Phosphohydrolases/metabolism , Humans , Microtubule-Associated Proteins/genetics , Microtubule-Associated Proteins/metabolism , Mitochondria/drug effects , Mitochondria/enzymology , Mitochondrial Proteins/genetics , Mitochondrial Proteins/metabolism , Molecular Sequence Data , Rotenone/pharmacology
2.
Protein Sci ; 24(3): 386-94, 2015 Mar.
Article in English | MEDLINE | ID: mdl-25581164

ABSTRACT

Mitochondrial fission requires recruitment of dynamin-related protein 1 (Drp1) to the mitochondrial surface, where assembly leads to activation of its GTP-dependent scission function. MiD49 and MiD51 are two receptors on the mitochondrial outer membrane that can recruit Drp1 to facilitate mitochondrial fission. Structural studies indicated that MiD51 has a variant nucleotidyl transferase fold that binds an ADP co-factor essential for activation of Drp1 function. MiD49 shares sequence homology with MiD51 and regulates Drp1 function. However, it is unknown if MiD49 binds an analogous co-factor. Because MiD49 does not readily crystallize, we used structural predictions and biochemical screening to identify a surface entropy reduction mutant that facilitated crystallization. Using molecular replacement, we determined the atomic structure of MiD49 to 2.4 Å. Like MiD51, MiD49 contains a nucleotidyl transferase domain; however, the electron density provides no evidence for a small-molecule ligand. Structural changes in the putative nucleotide-binding pocket make MiD49 incompatible with an extended ligand like ADP, and critical nucleotide-binding residues found in MiD51 are not conserved. MiD49 contains a surface loop that physically interacts with Drp1 and is necessary for Drp1 recruitment to the mitochondrial surface. Our results suggest a structural basis for the differential regulation of MiD51- versus MiD49-mediated fission.


Subject(s)
Dynamins/chemistry , Dynamins/metabolism , Mitochondrial Proteins/chemistry , Mitochondrial Proteins/metabolism , Peptide Elongation Factors/chemistry , Peptide Elongation Factors/metabolism , Amino Acid Sequence , Animals , Cells, Cultured , Humans , Mice , Models, Molecular , Molecular Sequence Data , Sequence Alignment
3.
Structure ; 22(3): 367-77, 2014 Mar 04.
Article in English | MEDLINE | ID: mdl-24508339

ABSTRACT

Mitochondrial fission requires recruitment of dynamin-related protein 1 (Drp1) to the mitochondrial surface and activation of its GTP-dependent scission function. The Drp1 receptors MiD49 and MiD51 recruit Drp1 to facilitate mitochondrial fission, but their mechanism of action is poorly understood. Using X-ray crystallography, we demonstrate that MiD51 contains a nucleotidyl transferase domain that binds ADP with high affinity. MiD51 recruits Drp1 via a surface loop that functions independently of ADP binding. However, in the absence of nucleotide binding, the recruited Drp1 cannot be activated for fission. Purified MiD51 strongly inhibits Drp1 assembly and GTP hydrolysis in the absence of ADP. Addition of ADP relieves this inhibition and promotes Drp1 assembly into spirals with enhanced GTP hydrolysis. Our results reveal ADP as an essential cofactor for MiD51 during mitochondrial fission.


Subject(s)
Adenosine Diphosphate/metabolism , Mitochondrial Dynamics , Mitochondrial Proteins/chemistry , Mitochondrial Proteins/metabolism , Receptors, Cytoplasmic and Nuclear/chemistry , Receptors, Cytoplasmic and Nuclear/metabolism , Binding Sites , Crystallography, X-Ray , Cytosol/metabolism , Dynamins/chemistry , Dynamins/genetics , Dynamins/metabolism , Guanosine Triphosphate/metabolism , Hydrolysis , Mitochondrial Proteins/genetics , Models, Molecular , Protein Conformation , Protein Multimerization , Protein Structure, Tertiary , Receptors, Cytoplasmic and Nuclear/genetics
4.
Mol Biol Cell ; 24(5): 659-67, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23283981

ABSTRACT

Several mitochondrial outer membrane proteins-mitochondrial fission protein 1 (Fis1), mitochondrial fission factor (Mff), mitochondrial dynamics proteins of 49 and 51 kDa (MiD49 and MiD51, respectively)-have been proposed to promote mitochondrial fission by recruiting the GTPase dynamin-related protein 1 (Drp1), but fundamental issues remain concerning their function. A recent study supported such a role for Mff but not for Fis1. In addition, it is unclear whether MiD49 and MiD51 activate or inhibit fission, because their overexpression causes extensive mitochondrial elongation. It is also unknown whether these proteins can act in the absence of one another to mediate fission. Using Fis1-null, Mff-null, and Fis1/Mff-null cells, we show that both Fis1 and Mff have roles in mitochondrial fission. Moreover, immunofluorescence analysis of Drp1 suggests that Fis1 and Mff are important for the number and size of Drp1 puncta on mitochondria. Finally, we find that either MiD49 or MiD51 can mediate Drp1 recruitment and mitochondrial fission in the absence of Fis1 and Mff. These results demonstrate that multiple receptors can recruit Drp1 to mediate mitochondrial fission.


Subject(s)
Dynamins/metabolism , Membrane Proteins/metabolism , Mitochondrial Dynamics/genetics , Mitochondrial Proteins/metabolism , Peptide Elongation Factors/metabolism , Animals , Dynamins/genetics , Fibroblasts/cytology , Fibroblasts/metabolism , HeLa Cells , Humans , Membrane Proteins/genetics , Mice , Microtubule-Associated Proteins/genetics , Microtubule-Associated Proteins/metabolism , Mitochondrial Membranes/metabolism , Mitochondrial Proteins/genetics , Peptide Elongation Factors/genetics , RNA, Small Interfering/metabolism
5.
J Neurochem ; 116(5): 909-15, 2011 Mar.
Article in English | MEDLINE | ID: mdl-21214554

ABSTRACT

Astrocytes possess much of the same exocytotic protein machinery as neurons do and can release various gliotransmitters stored in their secretory vesicles. An essential component of this exocytotic machinery is the vesicle-associated membrane protein synaptobrevin 2 (Sb2). In order to assess whether vesicular age plays a role in determining the intracellular location of vesicles in astrocytes, we generated a fluorescent chimeric form of Sb2. We appended the Sb2 cytosolic N-terminus with the fluorescent 'timer' protein DsRedE5, which changes its fluorescence emission from green to red as it ages. We found that Sb2-containing vesicles in astrocytes segregate and localize intracellularly in an age dependent manner. Younger vesicles predominately localize at the periphery of cell somata and processes, while older vesicles predominately locate at the central portion of the cell body. These findings raise the notion that there might be differential astrocyte-neuron signaling at sites away or at the tripartite synapse that could be modulated by the age of vesicles and/or their cargo.


Subject(s)
Aging , Astrocytes/cytology , Secretory Vesicles/metabolism , Vesicle-Associated Membrane Protein 2/metabolism , Animals , Animals, Newborn , Cells, Cultured , Green Fluorescent Proteins/genetics , Luminescent Proteins/metabolism , Rats , Rats, Sprague-Dawley , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Time Factors , Transfection , Visual Cortex/cytology
6.
Nature ; 460(7254): 510-4, 2009 Jul 23.
Article in English | MEDLINE | ID: mdl-19578359

ABSTRACT

Development normally occurs similarly in all individuals within an isogenic population, but mutations often affect the fates of individual organisms differently. This phenomenon, known as partial penetrance, has been observed in diverse developmental systems. However, it remains unclear how the underlying genetic network specifies the set of possible alternative fates and how the relative frequencies of these fates evolve. Here we identify a stochastic cell fate determination process that operates in Bacillus subtilis sporulation mutants and show how it allows genetic control of the penetrance of multiple fates. Mutations in an intercompartmental signalling process generate a set of discrete alternative fates not observed in wild-type cells, including rare formation of two viable 'twin' spores, rather than one within a single cell. By genetically modulating chromosome replication and septation, we can systematically tune the penetrance of each mutant fate. Furthermore, signalling and replication perturbations synergize to significantly increase the penetrance of twin sporulation. These results suggest a potential pathway for developmental evolution between monosporulation and twin sporulation through states of intermediate twin penetrance. Furthermore, time-lapse microscopy of twin sporulation in wild-type Clostridium oceanicum shows a strong resemblance to twin sporulation in these B. subtilis mutants. Together the results suggest that noise can facilitate developmental evolution by enabling the initial expression of discrete morphological traits at low penetrance, and allowing their stabilization by gradual adjustment of genetic parameters.


Subject(s)
Bacillus subtilis/physiology , Biological Evolution , Gene Expression Regulation, Bacterial , Bacillus subtilis/genetics , DNA Replication , Spores, Bacterial/growth & development
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