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1.
J Mol Biol ; 435(1): 167774, 2023 01 15.
Article in English | MEDLINE | ID: mdl-35931110

ABSTRACT

The molecules and mechanisms behind chemical synaptic transmission have been explored for decades. For several of the core proteins involved in synaptic vesicle fusion, we now have a reasonably detailed grasp of their biochemical, structural, and functional properties. Complexin is one of the key synaptic proteins for which a simple mechanistic understanding is still lacking. Living up to its name, this small protein has been associated with a variety of roles differing between synapses and between species, but little consensus has been reached on its fundamental modes of action. Much attention has been paid to its deeply conserved SNARE-binding properties, while membrane-binding features of complexin and their functional significance have yet to be explored to the same degree. In this review, we summarize the known membrane interactions of the complexin C-terminal domain and their potential relevance to its function, synaptic localization, and evolutionary history.


Subject(s)
Adaptor Proteins, Vesicular Transport , Membrane Fusion , Nerve Tissue Proteins , Synaptic Vesicles , Adaptor Proteins, Vesicular Transport/genetics , Adaptor Proteins, Vesicular Transport/chemistry , Adaptor Proteins, Vesicular Transport/metabolism , Exocytosis , Nerve Tissue Proteins/metabolism , SNARE Proteins/metabolism , Synaptic Vesicles/metabolism
2.
J Med Chem ; 61(11): 4860-4882, 2018 06 14.
Article in English | MEDLINE | ID: mdl-29767967

ABSTRACT

The P2Y14 receptor (P2Y14R) mediates inflammatory activity by activating neutrophil motility, but few classes of antagonists are known. We have explored the structure-activity relationship of a 3-(4-phenyl-1 H-1,2,3-triazol-1-yl)-5-(aryl)benzoic acid antagonist scaffold, assisted by docking and molecular dynamics (MD) simulation at a P2Y14R homology model. A computational pipeline using the High Throughput MD Python environment guided the analogue design. Selection of candidates was based upon ligand-protein shape and complementarity and the persistence of ligand-protein interactions over time. Predictions of a favorable substitution of a 5-phenyl group with thiophene and an insertion of a three-methylene spacer between the 5-aromatic and alkyl amino moieties were largely consistent with empirical results. The substitution of a key carboxylate group on the core phenyl ring with tetrazole or truncation of the 5-aryl group reduced affinity. The most potent antagonists, using a fluorescent assay, were a primary 3-aminopropyl congener 20 (MRS4458) and phenyl p-carboxamide 30 (MRS4478).


Subject(s)
Drug Design , Heterocyclic Compounds/chemistry , Heterocyclic Compounds/pharmacology , Purinergic P2 Receptor Antagonists/chemistry , Purinergic P2 Receptor Antagonists/pharmacology , Receptors, Purinergic P2/metabolism , Amines/chemistry , Animals , CHO Cells , Cricetulus , Heterocyclic Compounds/metabolism , Heterocyclic Compounds/pharmacokinetics , Humans , Molecular Dynamics Simulation , Protein Conformation , Purinergic P2 Receptor Antagonists/metabolism , Purinergic P2 Receptor Antagonists/pharmacokinetics , Receptors, Purinergic P2/chemistry , Structure-Activity Relationship
3.
Annu Rev Anal Chem (Palo Alto Calif) ; 9(1): 163-81, 2016 Jun 12.
Article in English | MEDLINE | ID: mdl-27070185

ABSTRACT

The development of structure-switching, electrochemical, aptamer-based sensors over the past ∼10 years has led to a variety of reagentless sensors capable of analytical detection in a range of sample matrices. The crux of this methodology is the coupling of target-induced conformation changes of a redox-labeled aptamer with electrochemical detection of the resulting altered charge transfer rate between the redox molecule and electrode surface. Using aptamer recognition expands the highly sensitive detection ability of electrochemistry to a range of previously inaccessible analytes. In this review, we focus on the methods of sensor fabrication and how sensor signaling is affected by fabrication parameters. We then discuss recent studies addressing the fundamentals of sensor signaling as well as quantitative characterization of the analytical performance of electrochemical aptamer-based sensors. Although the limits of detection of reported electrochemical aptamer-based sensors do not often reach that of gold-standard methods such as enzyme-linked immunosorbent assays, the operational convenience of the sensor platform enables exciting analytical applications that we address. Using illustrative examples, we highlight recent advances in the field that impact important areas of analytical chemistry. Finally, we discuss the challenges and prospects for this class of sensors.

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