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1.
Stroke Vasc Neurol ; 2023 Jul 26.
Article in English | MEDLINE | ID: mdl-37495379

ABSTRACT

BACKGROUND AND PURPOSE: Multiple factors play important roles in the occurrence and prognosis of stroke. However, the roles of monogenic variants in all-cause ischaemic stroke have not been systematically investigated. We aim to identify underdiagnosed monogenic stroke in an adult ischaemic stroke/transient ischaemic attack (TIA) cohort (the Third China National Stroke Registry, CNSR-III). METHODS: Targeted next-generation sequencing for 181 genes associated with stroke was conducted on DNA samples from 10 428 patients recruited through CNSR-III. The genetic and clinical data from electronic health records (EHRs) were reviewed for completion of the diagnostic process. We assessed the percentages of individuals with pathogenic or likely pathogenic (P/LP) variants, and the diagnostic yield of pathogenic variants in known monogenic disease genes with associated phenotypes. RESULTS: In total, 1953 individuals harboured at least one P/LP variant out of 10 428 patients. Then, 792 (7.6%) individuals (comprising 759 individuals harbouring one P/LP variant in one gene, 29 individuals harbouring two or more P/LP variants in different genes and 4 individuals with two P/LP variants in ABCC6) were predicted to be at risk for one or more monogenic diseases based on the inheritance pattern. Finally, 230 of 792 individuals manifested a clinical phenotype in the EHR data to support the diagnosis of stroke with a monogenic cause. The most diagnosed Mendelian cause of stroke in the cohort was cerebral autosomal dominant arteriopathy with subcortical infarcts and leukoencephalopathy. There were no relationships between age or family history and the incidence of first symptomatic monogenic stroke in patients. CONCLUSION: The rate of monogenic cause of stroke was 2.2% after reviewing the clinical phenotype. Possible reasons that Mendelian causes of stroke may be missed in adult patients who had an ischaemic stroke/TIA include a late onset of stroke symptoms, combination with common vascular risks and the absence of a prominent family history.

3.
Int J Mol Sci ; 24(8)2023 Apr 12.
Article in English | MEDLINE | ID: mdl-37108265

ABSTRACT

The superfamily of soluble N-ethylmaleimide-sensitive factor attachment protein receptor (SNARE) proteins mediates membrane fusion during vesicular transport between endosomes and the plasma membrane in eukaryotic cells, playing a vital role in plant development and responses to biotic and abiotic stresses. Peanut (Arachis hypogaea L.) is a major oilseed crop worldwide that produces pods below ground, which is rare in flowering plants. To date, however, there has been no systematic study of SNARE family proteins in peanut. In this study, we identified 129 putative SNARE genes from cultivated peanut (A. hypogaea) and 127 from wild peanut (63 from Arachis duranensis, 64 from Arachis ipaensis). We sorted the encoded proteins into five subgroups (Qa-, Qb-, Qc-, Qb+c- and R-SNARE) based on their phylogenetic relationships with Arabidopsis SNAREs. The genes were unevenly distributed on all 20 chromosomes, exhibiting a high rate of homolog retention from their two ancestors. We identified cis-acting elements associated with development, biotic and abiotic stresses in the promoters of peanut SNARE genes. Transcriptomic data showed that expression of SNARE genes is tissue-specific and stress inducible. We hypothesize that AhVTI13b plays an important role in the storage of lipid proteins, while AhSYP122a, AhSNAP33a and AhVAMP721a might play an important role in development and stress responses. Furthermore, we showed that three AhSNARE genes (AhSYP122a, AhSNAP33a and AhVAMP721) enhance cold and NaCl tolerance in yeast (Saccharomyces cerevisiae), especially AhSNAP33a. This systematic study provides valuable information about the functional characteristics of AhSNARE genes in the development and regulation of abiotic stress responses in peanut.


Subject(s)
Arachis , Membrane Fusion , Arachis/genetics , Arachis/metabolism , Phylogeny , SNARE Proteins/genetics , SNARE Proteins/metabolism , Genome, Plant
4.
Plants (Basel) ; 12(6)2023 Mar 11.
Article in English | MEDLINE | ID: mdl-36986971

ABSTRACT

Soil salinization is an important factor limiting food security and ecological stability. As a commonly used greening tree species, Robinia pseudoacacia often suffers from salt stress that can manifest as leaf yellowing, decreased photosynthesis, disintegrated chloroplasts, growth stagnation, and even death. To elucidate how salt stress decreases photosynthesis and damages photosynthetic structures, we treated R. pseudoacacia seedlings with different concentrations of NaCl (0, 50, 100, 150, and 200 mM) for 2 weeks and then measured their biomass, ion content, organic soluble substance content, reactive oxygen species (ROS) content, antioxidant enzyme activity, photosynthetic parameters, chloroplast ultrastructure, and chloroplast development-related gene expression. NaCl treatment significantly decreased biomass and photosynthetic parameters, but increased ion content, organic soluble substances, and ROS content. High NaCl concentrations (100-200 mM) also led to distorted chloroplasts, scattered and deformed grana lamellae, disintegrated thylakoid structures, irregularly swollen starch granules, and larger, more numerous lipid spheres. Compared to control (0 mM NaCl), the 50 mM NaCl treatment significantly increased antioxidant enzyme activity while upregulating the expression of the ion transport-related genes Na+/H+ exchanger 1(NHX 1) and salt overly sensitive 1 (SOS 1) and the chloroplast development-related genes psaA, psbA, psaB, psbD, psaC, psbC, ndhH, ndhE, rps7, and ropA. Additionally, high concentrations of NaCl (100-200 mM) decreased antioxidant enzyme activity and downregulated the expression of ion transport- and chloroplast development-related genes. These results showed that although R. pseudoacacia can tolerate low concentrations of NaCl, high concentrations (100-200 mM) can damage chloroplast structure and disturb metabolic processes by downregulating gene expression.

5.
Int J Mol Sci ; 23(22)2022 Nov 11.
Article in English | MEDLINE | ID: mdl-36430364

ABSTRACT

Soil salinization is one of the major factors restricting crop growth and agricultural production worldwide. Recretohalophytes have developed unique epidermal structures in their aboveground tissues, such as salt glands or salt bladders, to secrete excess salt out of the plant body as a protective mechanism from ion damage. Three hypotheses were proposed to explain how salt glands secrete salts: the osmotic hypothesis, a hypothesis similar to animal fluid transport, and vesicle-mediated exocytosis. However, there is no direct evidence to show whether the salt gland-secreted liquid contains landmark proteins or peptides which would elucidate the salt secretion mechanism. In this study, we collected the secreted liquid of salt glands from Limonium bicolor, followed by extraction and identification of its constituent proteins and peptides by SDS-PAGE and mass spectrometry. We detected 214 proteins and 440 polypeptides in the salt gland-secreted droplets of plants grown under control conditions. Unexpectedly, the proportion of energy metabolism-related proteins increased significantly though only 16 proteins and 35 polypeptides in the droplets of salt-treated plants were detected. In addition, vesicle transport proteins such as the Golgi marker enzyme glycosyltransferase were present in the secreted sap of salt glands from both control and salt-treated plants. These results suggest that trans-Golgi network-mediated vesicular transport and energy production contributes to salt secretion in salt glands.


Subject(s)
Proteomics , Salt Gland , Animals , Salt Gland/metabolism , Plant Leaves/metabolism , Sodium Chloride/metabolism , Sodium Chloride, Dietary/metabolism , Energy Metabolism
6.
Mol Plant ; 15(6): 1024-1044, 2022 06 06.
Article in English | MEDLINE | ID: mdl-35514085

ABSTRACT

Halophytes have evolved specialized strategies to cope with high salinity. The extreme halophyte sea lavender (Limonium bicolor) lacks trichomes but possesses salt glands on its epidermis that can excrete harmful ions, such as sodium, to avoid salt damage. Here, we report a high-quality, 2.92-Gb, chromosome-scale L. bicolor genome assembly based on a combination of Illumina short reads, single-molecule, real-time long reads, chromosome conformation capture (Hi-C) data, and Bionano genome maps, greatly enriching the genomic information on recretohalophytes with multicellular salt glands. Although the L. bicolor genome contains genes that show similarity to trichome fate genes from Arabidopsis thaliana, it lacks homologs of the decision fate genes GLABRA3, ENHANCER OF GLABRA3, GLABRA2, TRANSPARENT TESTA GLABRA2, and SIAMESE, providing a molecular explanation for the absence of trichomes in this species. We identified key genes (LbHLH and LbTTG1) controlling salt gland development among classical trichome homologous genes and confirmed their roles by showing that their mutations markedly disrupted salt gland initiation, salt secretion, and salt tolerance, thus offering genetic support for the long-standing hypothesis that salt glands and trichomes may share a common origin. In addition, a whole-genome duplication event occurred in the L. bicolor genome after its divergence from Tartary buckwheat and may have contributed to its adaptation to high salinity. The L. bicolor genome resource and genetic evidence reported in this study provide profound insights into plant salt tolerance mechanisms that may facilitate the engineering of salt-tolerant crops.


Subject(s)
Arabidopsis , Plumbaginaceae , Animals , Plant Leaves/genetics , Plumbaginaceae/genetics , Salinity , Salt Gland , Salt Tolerance/genetics , Salt-Tolerant Plants/genetics
7.
Planta ; 254(4): 81, 2021 Sep 23.
Article in English | MEDLINE | ID: mdl-34554320

ABSTRACT

MAIN CONCLUSION: SbCASP4 improves the salt tolerance of sweet sorghum [Sorghum bicolor (L.) Mocnch] by enhancing the root apoplastic barrier and blocking the transport of sodium ions to the shoot. Sweet sorghum [Sorghum bicolor (L.) Mocnch] is a C4 crop with high biomass and tolerance to abiotic stresses such as salt, drought, and waterlogging. Sweet sorghum is widely used in bioenergy production, as a forage crop, and in liquors and beer. Root salt exclusion has been reported to underlie the salt tolerance of sweet sorghum. The Casparian strip has a key role in root salt exclusion, and the membrane domain protein (CASP) family participates in Casparian strip aggregation. However, the function and the regulatory mechanisms of SbCASP in response to salt stress in sweet sorghum are unclear. In the current study, we cloned SbCASP4 and determined that it is induced by salt stress and expressed in the endodermis cells of sweet sorghum. Histochemical staining and physiological indicators showed that heterologous expression of SbCASP4 significantly increased the tolerance to salt stress in transgenic Arabidopsis thaliana. Compared with wild type and casp5 mutants, under 50 mM NaCl treatment, SbCASP4-expression lines had the less leaf Na+, lower PI accumulation in stele, smaller oxidative damage and higher salinity threshold, longer root length and higher expression levels of the genes related to Casparian strip formation.


Subject(s)
Arabidopsis , Sorghum , Arabidopsis/genetics , Salinity , Salt Stress , Salt Tolerance , Sorghum/genetics , Stress, Physiological
8.
Am J Med Sci ; 362(3): 260-267, 2021 09.
Article in English | MEDLINE | ID: mdl-34266644

ABSTRACT

BACKGROUND: The prevalence of Fabry disease (FD) in Chinese patients with hypertrophic cardiomyopathy (HCM) is unclear. We aimed to evaluate the prevalence, clinical characteristics, and outcomes of FD in Chinese patients with HCM. METHODS: Of 217 patients with HCM, FD probands were screened by next-generation sequencing at Fuwai Hospital. Medical data from α-galactosidase A activity, electrocardiography, echocardiography, coronary angiography, cardiac magnetic resonance, pathological examination, and follow up was analyzed. RESULTS: Two FD probands were observed (0.93% of patients with HCM), both of which were diagnosed with symptomatic obstructive HCM at 49 years of age. One proband had a GLA mutation (c.887T>C [p.M296T]) with a late-onset cardiac variant, which was characterized by dual ventricular hypertrophy and conduction disease with a permanent pacemaker. The other patient had a GLA mutation (c.758T>C [p.I253T]) with a classic phenotype and dual ventricular hypertrophy, atrioventricular block, renal failure, and recurrent cerebral infarction. Both probands had late gadolinium enhancement mainly in the basal segment of the inferolateral wall. Follow up revealed no exertional symptoms or outflow obstruction after surgical septal myectomy in the two probands, and stable renal function was observed after 6 months of migalastat therapy in the later one. A family study revealed six female carriers and three sudden cardiac deaths. CONCLUSIONS: FD is not uncommon in Chinese patients with HCM. Multiple organic involvement, dual ventricular hypertrophy, and conduction disease provide clinical clues for suspected FD, and early genetic screening is necessary. Surgical septal myectomy and migalastat improve the long-term prognosis of patients with FD.


Subject(s)
Cardiomyopathy, Hypertrophic/diagnostic imaging , Cardiomyopathy, Hypertrophic/epidemiology , Fabry Disease/diagnostic imaging , Fabry Disease/epidemiology , Adolescent , Adult , Aged , Aged, 80 and over , Cardiomyopathy, Hypertrophic/genetics , China/epidemiology , Echocardiography/methods , Electrocardiography/methods , Fabry Disease/genetics , Female , Follow-Up Studies , Humans , Male , Middle Aged , Pedigree , Prevalence , Young Adult
9.
Int J Mol Sci ; 22(4)2021 Feb 23.
Article in English | MEDLINE | ID: mdl-33672188

ABSTRACT

Soil salinization is a serious and growing problem around the world. Some plants, recognized as the recretohalophytes, can normally grow on saline-alkali soil without adverse effects by secreting excessive salt out of the body. The elucidation of the salt secretion process is of great significance for understanding the salt tolerance mechanism adopted by the recretohalophytes. Between the 1950s and the 1970s, three hypotheses, including the osmotic potential hypothesis, the transfer system similar to liquid flow in animals, and vesicle-mediated exocytosis, were proposed to explain the salt secretion process of plant salt glands. More recently, increasing evidence has indicated that vesicular transport plays vital roles in salt secretion of recretohalophytes. Here, we summarize recent findings, especially regarding the molecular evidence on the functional roles of vesicular trafficking in the salt secretion process of plant salt glands. A model of salt secretion in salt gland is also proposed.


Subject(s)
Salt-Tolerant Plants/anatomy & histology , Salt-Tolerant Plants/physiology , Salts/metabolism , Biological Transport , Gene Expression Regulation, Plant , Plant Cells/ultrastructure , Plant Proteins/genetics , Plant Proteins/metabolism , Salt-Tolerant Plants/cytology
10.
Plant Sci ; 302: 110704, 2021 Jan.
Article in English | MEDLINE | ID: mdl-33288017

ABSTRACT

Arabidopsis thaliana TRY is a negative regulator of trichome differentiation that promotes root hair differentiation. Here, we established that LbTRY, from the recretohalophyte Limonium bicolor, is a typical MYB transcription factor that exhibits transcriptional activation activity and locates in nucleus. By in situ hybridization in L. bicolor, LbTRY may be specifically positioned in salt gland of the expanded leaves. LbTRY expression was the highest in mature leaves and lowest under NaCl treatment. For functional assessment, we heterologously expressed LbTRY in wild-type and try29760 mutant Arabidopsis plants. Epidermal differentiation was remarkably affected in the transgenic wild-type line, as was increased root hair development. Complementation of try29760 with LbTRY under both 35S and LbTRY specific promoter restored the wild-type phenotype. qRT-PCR analysis suggested that AtGL3 and AtZFP5 promote root hair cell fate in lines heterologously producing LbTRY. In addition, four genes (AtRHD6, AtRSL1, AtLRL2, and AtLRL3) involved in root hair initiation and elongation were upregulated in the transgenic lines. Furthermore, LbTRY specifically increased the salt sensitivity of the transgenic lines. The transgenic and complementation lines showed poor germination rates and reduced root lengths, whereas the mutant unexpectedly fared the best under a range of NaCl treatments. Under salt stress, the transgenic seedlings accumulated more MDA and Na+ and less proline and soluble sugar than try29760. Thus, when heterologously expressed in Arabidopsis, LbTRY participates in hair development, similar to other MYB proteins, and specifically reduces salt tolerance by increasing ion accumulation and reducing osmolytes. The expression of salt-tolerance marker genes (SOS1, SOS2, SOS3 and P5CS1) was significant reduced in the transgenic lines. More will be carried by downregulating expression of TRY homologs in crops to improve salt tolerance.


Subject(s)
Osmoregulation/genetics , Plant Proteins/physiology , Plant Roots/growth & development , Plumbaginaceae/genetics , Proto-Oncogene Proteins c-myb/physiology , Salt-Tolerant Plants/genetics , Arabidopsis , Cloning, Molecular , Gene Expression Regulation, Plant , In Situ Hybridization , Osmoregulation/physiology , Plant Leaves/growth & development , Plant Proteins/genetics , Plant Proteins/metabolism , Plant Roots/metabolism , Plant Roots/physiology , Plants, Genetically Modified , Plumbaginaceae/growth & development , Plumbaginaceae/metabolism , Plumbaginaceae/physiology , Proto-Oncogene Proteins c-myb/genetics , Proto-Oncogene Proteins c-myb/metabolism , Salt Tolerance , Salt-Tolerant Plants/growth & development , Salt-Tolerant Plants/metabolism , Salt-Tolerant Plants/physiology
11.
BMC Plant Biol ; 20(1): 262, 2020 Jun 08.
Article in English | MEDLINE | ID: mdl-32513114

ABSTRACT

BACKGROUND: Halophytes show optimal reproduction under high-salinity conditions. However, the role of NaCl in reproduction and its possible mechanisms in the euhalophyte Suaeda salsa remain to be elucidated. RESULTS: We performed transcript profiling of S. salsa flowers and measured starch accumulation in ovules, sugar contents in flowers, and photosynthetic parameters in the leaves of plants supplied with 0 and 200 mM NaCl. Starch accumulation in ovules, sugar contents in flowers and ovules, and net photosynthetic rate and photochemical efficiency in leaves were significantly higher in NaCl-treated plants vs. the control. We identified 14,348 differentially expressed genes in flowers of NaCl-treated vs. control plants. Many of these genes were predicted to be associated with photosynthesis, carbon utilization, and sugar and starch metabolism. These genes are crucial for maintaining photosystem structure, regulating electron transport, and improving photosynthetic efficiency in NaCl-treated plants. In addition, genes encoding fructokinase and sucrose phosphate synthase were upregulated in flowers of NaCl-treated plants. CONCLUSIONS: The higher starch and sugar contents in the ovules and flowers of S. salsa in response to NaCl treatment are likely due to the upregulation of genes involved in photosynthesis and carbohydrate metabolism, which increase photosynthetic efficiency and accumulation of photosynthetic products under these conditions.


Subject(s)
Chenopodiaceae/metabolism , Ovule/metabolism , Sodium Chloride/metabolism , Starch/metabolism , Carbohydrate Metabolism , Chenopodiaceae/physiology , Gene Expression Profiling , Gene Expression Regulation, Plant/physiology , Ovule/physiology , Photosynthesis , Plant Leaves/metabolism , Reproduction/physiology
12.
Front Plant Sci ; 11: 298, 2020.
Article in English | MEDLINE | ID: mdl-32256516

ABSTRACT

[This corrects the article DOI: 10.3389/fpls.2020.00115.].

13.
Front Plant Sci ; 11: 115, 2020.
Article in English | MEDLINE | ID: mdl-32153617

ABSTRACT

Abiotic stresses such as drought and salinity are major environmental factors that limit crop yields. Unraveling the molecular mechanisms underlying abiotic stress resistance is crucial for improving crop performance and increasing productivity under adverse environmental conditions. Zinc finger proteins, comprising one of the largest transcription factor families, are known for their finger-like structure and their ability to bind Zn2+. Zinc finger proteins are categorized into nine subfamilies based on their conserved Cys and His motifs, including the Cys2/His2-type (C2H2), C3H, C3HC4, C2HC5, C4HC3, C2HC, C4, C6, and C8 subfamilies. Over the past two decades, much progress has been made in understanding the roles of C2H2 zinc finger proteins in plant growth, development, and stress signal transduction. In this review, we focus on recent progress in elucidating the structures, functions, and classifications of plant C2H2 zinc finger proteins and their roles in abiotic stress responses.

14.
Funct Plant Biol ; 47(2): 170-183, 2020 02.
Article in English | MEDLINE | ID: mdl-31941563

ABSTRACT

Phytohormones are essential for plant reproductive growth. Salinity limits crop reproductive growth and yield, but improves reproductive growth of euhalophytes. However, little is known about the mechanisms underlying salinity's effects on plant reproductive growth. To elucidate the role of plant hormones in flower development of the euhalophyte Suaeda salsa under saline conditions, we analysed endogenous gibberellic acid (GA3,4), indoleacetic acid (IAA), zeatin riboside (ZR), abscisic acid (ABA), and brassinosteroids (BRs) during flowering in control (0 mM) and NaCl-treated (200 mM) plants. At the end of vegetative growth, endogenous GA3, GA4, ABA and BR contents in stems of NaCl-treated plants were significantly higher than those in controls. During flowering, GA3, GA4, IAA and ZR contents showed the most significant enhancement in flower organs of plants treated with NaCl when compared with controls. Additionally, genes related to ZR, IAA, GA, BR and ABA biosynthesis and plant hormone signal transduction, such as those encoding CYP735A, CYP85A, GID1, NCED, PIF4, AHP, TCH4, SnRK2 and ABF, were upregulated in S. salsa flowers from NaCl-treated plants. These results suggest that coordinated upregulation of genes involved in phytohormone biosynthesis and signal transduction contributes to the enhanced reproductive growth of S. salsa under salinity.


Subject(s)
Chenopodiaceae , Plant Growth Regulators , Abscisic Acid , Salinity , Signal Transduction
15.
Front Med ; 14(3): 305-317, 2020 Jun.
Article in English | MEDLINE | ID: mdl-31884525

ABSTRACT

Familial acne inversa (AI) is an autoinflammatory disorder that affects hair follicles and is caused by loss-of-function mutations in γ-secretase component genes. We and other researchers showed that nicastrin (NCSTN) is the most frequently mutated gene in familial AI. In this study, we generated a keratin 5-Cre-driven epidermis-specific Ncstn conditional knockout mutant in mice. We determined that this mutant recapitulated the major phenotypes of AI, including hyperkeratosis of hair follicles and inflammation. In Ncstnflox/flox;K5-Cre mice, the IL-36a expression level markedly increased starting from postnatal day 0 (P0), and this increase occurred much earlier than those of TNF-α, IL-23A, IL-1ß, and TLR4. RNA-Seq analysis indicated that Sprr2d, a member of the small proline-rich protein 2 family, in the skin tissues of the Ncstnflox/flox;K5-Cre mice was also upregulated on P0. Quantitative reverse-transcription polymerase chain reaction showed that other Sprr2 genes had a similar expression pattern. Our findings suggested that IL-36a might be a key inflammatory cytokine in the pathophysiology of AI and involved in the malfunction of the skin barrier in the pathogenesis of AI.


Subject(s)
Amyloid Precursor Protein Secretases/genetics , Cornified Envelope Proline-Rich Proteins/metabolism , Hidradenitis Suppurativa/genetics , Interleukin-1/metabolism , Keratin-5/genetics , Membrane Glycoproteins/genetics , Animals , Cornified Envelope Proline-Rich Proteins/genetics , Disease Models, Animal , Gene Deletion , HaCaT Cells , Hidradenitis Suppurativa/metabolism , Humans , Integrases/genetics , Interleukin-1/genetics , Mice , Mice, Knockout , Phenotype
16.
Kidney Blood Press Res ; 44(5): 942-949, 2019.
Article in English | MEDLINE | ID: mdl-31437854

ABSTRACT

BACKGROUND/AIMS: Liddle syndrome (LS) is a rare autosomal dominant disease caused by mutations in genes coding for epithelial sodium channel (ENaC) subunits. The aim of this study was to identify the mutation responsible for the LS in an extended Chinese family. METHODS: DNA samples from the proband with early-onset, treatment-resistant hypertension, and hypokalemia and 19 additional relatives were all sequenced for mutations in exon 13 of the ß-ENaC and γ-ENaC genes, using amplification by polymerase chain reaction and direct DNA sequencing. RESULTS: Genetic testing of exon 13 of SCNN1B revealed duplication of guanine into a string of 3 guanines located at codon 602. This frameshift mutation is predicted to generate a premature stop codon at position 607, resulting in truncated ß-ENaC lacking the remaining 34 amino acids, including the crucial PY motif. Among a total of 9 participants with the identical mutation, different phenotypes were identified. Tailored treatment with amiloride was safe and effective in alleviating disease symptoms in LS. No mutation of SCNN1G was identified in any of the examined participants. CONCLUSIONS: We report here a family affected by LS harboring a frameshift mutation (c.1806dupG) with a premature stop codon deleting the PY motif of ß-ENaC. Our study demonstrates that the earlier LS patients are diagnosed by genetic testing and treated with tailored medication, the greater the likelihood of preventing or minimizing complications in the vasculature and target organs.


Subject(s)
Epithelial Sodium Channels/genetics , Frameshift Mutation/genetics , Genetic Testing/methods , Liddle Syndrome/diagnosis , Adolescent , Adult , Aged , Asian People , Child , Child, Preschool , Female , Humans , Liddle Syndrome/pathology , Male , Middle Aged , Phenotype , Young Adult
17.
Sci China Life Sci ; 62(12): 1630-1637, 2019 Dec.
Article in English | MEDLINE | ID: mdl-31098894

ABSTRACT

Marfan syndrome (MFS) is a systemic connective tissue disease principally affecting the ocular, skeletal and cardiovascular systems. This autosomal dominant disorder carries a prevalence of 1:3,000 to 1:5,000. This study aims to define the mutational spectrum of MFS related genes in Chinese patients and to establish genotype-phenotype correlations in MFS. Panel-based targeted next-generation sequencing was used to analyze the FBN1, TGFBR1 and TGFBR2 genes in 123 unrelated Chinese individuals with MFS or a related disease. Genotype-phenotype correlation analyses were performed in mutation-positive patients. The results showed that 97 cases/families (78.9%; 97/123) harbor at least one (likely) pathogenic mutation, most of which were in FBN1; four patients had TGFBR1/2 mutations; and one patient harbored a SMAD3 mutation. Three patients had two FBN1 mutations, and all patients showed classical MFS phenotypes. Patients with a dominant negative-FBN1 mutation had a higher prevalence of ectopia lentis (EL). Patients carrying a haploinsufficiency-FBN1 mutation tended to have aortic dissection without EL. This study extends the spectrum of genetic backgrounds of MFS and enriches our knowledge of genotype-phenotype correlations.


Subject(s)
Genetic Testing/methods , High-Throughput Nucleotide Sequencing/methods , Marfan Syndrome/genetics , Adolescent , Adult , Aged , Asian People , DNA Mutational Analysis , Ectopia Lentis/metabolism , Female , Genetic Association Studies , Genotype , Humans , Male , Marfan Syndrome/classification , Marfan Syndrome/diagnosis , Middle Aged , Mutation , Risk Factors
18.
Hum Mutat ; 40(5): 588-600, 2019 05.
Article in English | MEDLINE | ID: mdl-30715774

ABSTRACT

Osteogenesis imperfecta (OI) is a rare hereditary skeletal dysplasia, characterized by recurrent fractures and bone deformity. This study presents a clinical characterization and mutation analysis of 668 patients, aiming to establish the mutation spectrum and to elucidate genotype-phenotype correlations in Chinese OI patients. We identified 274 sequence variants (230 in type I collagen encoding genes and 44 in noncollagen genes), including 102 novel variants, in 340 probands with a detection rate of 90%. Compared with 47 loss-of-function variants detected in COL1A1, neither nonsense nor frameshift variants were found in COL1A2 (p < 0.0001). The major cause of autosomal recessive OI was biallelic variants in WNT1 (56%, 20/36). It is noteworthy that three genomic rearrangements, including one gross deletion and one gross duplication in COL1A1 as well as one gross deletion in FKBP10, were detected in this study. Of ten individuals with glycine substitutions that lie towards the N-terminal end of the triple-helical region of the α1(I) chain, none exhibited hearing loss, suggesting a potential genotype-phenotype correlation. The findings in this study expanded the mutation spectrum and identified novel correlations between genotype and phenotype in Chinese OI patients.


Subject(s)
Genetic Association Studies , Genetic Predisposition to Disease , Genotype , Osteogenesis Imperfecta/diagnosis , Osteogenesis Imperfecta/genetics , Phenotype , Alleles , Alternative Splicing , Biomarkers , Collagen Type I/genetics , Computational Biology , Female , Gene Frequency , Genetic Association Studies/methods , Humans , Male , Exome Sequencing
19.
Chin Med J (Engl) ; 132(2): 127-134, 2019 Jan 20.
Article in English | MEDLINE | ID: mdl-30614851

ABSTRACT

BACKGROUND: Desminopathy, a hereditary myofibrillar myopathy, mainly results from the desmin gene (DES) mutations. Desminopathy involves various phenotypes, mainly including different cardiomyopathies, skeletal myopathy, and arrhythmia. Combined with genotype, it helps us precisely diagnose and treat for desminopathy. METHODS: Sanger sequencing was used to characterize DES variation, and then a minigene assay was used to verify the effect of splice-site mutation on pre-mRNA splicing. Phenotypes were analyzed based on clinical characteristics associated with desminopathy. RESULTS: A splicing mutation (c.735+1G>T) in DES was detected in the proband. A minigene assay revealed skipping of the whole exon 3 and transcription of abnormal pre-mRNA lacking 32 codons. Another affected family member who carried the identical mutation, was identified with a novel phenotype of desminopathy, non-compaction of ventricular myocardium. There were 2 different phenotypes varied in cardiomyopathy and skeletal myopathy among the 2 patients, but no significant correlation between genotype and phenotype was identified. CONCLUSIONS: We reported a novel phenotype with a splicing mutation in DES, enlarging the spectrum of phenotype in desminopathy. Molecular studies of desminopathy should promote our understanding of its pathogenesis and provide a precise molecular diagnosis of this disorder, facilitating clinical prevention and treatment at an early stage.


Subject(s)
Cardiomyopathies/genetics , Muscular Dystrophies/genetics , Mutation/genetics , Animals , Asian People , Cardiomyopathies/pathology , Desmin/genetics , Electrocardiography , Female , Genotype , Humans , Male , Middle Aged , Muscular Dystrophies/pathology , Pedigree , Phenotype
20.
Endocr Connect ; 7(12): 1528-1534, 2018 Dec.
Article in English | MEDLINE | ID: mdl-30496127

ABSTRACT

Liddle syndrome (LS), a monogenetic autosomal dominant disorder, is mainly characterized by early-onset hypertension and hypokalemia. Clinically, misdiagnosis or missing diagnosis is common, since clinical phenotypes of LS are variable and nonspecific. We report a family with misdiagnosis of primary aldosteronism (PA), but identify as LS with a pathogenic frameshift mutation of the epithelial sodium channel (ENaC) ß subunit. DNA samples were collected from a 32-year-old proband and 31 other relatives in the same family. A designed panel including 41 genes associated with monogenic hypertension was screened using next-generation sequencing. The best candidate disease-causing variants were verified by Sanger sequencing. Genetic analysis of the proband revealed a novel frameshift mutation c.1838delC (p.Pro613Glnfs*675) in exon 13 of SCNN1B. This heterozygous mutation involved the deletion of a cytosine from a string of three consecutive cytosines located at codons 612 to 613 and resulted in deletion of the crucial PY motif and elongation of the ß-ENaC protein. The identical mutation was also found in 12 affected family members. Amiloride was effective in alleviating LS for patients. There were no SCNN1A or SCNN1G mutations in this family. Our study emphasizes the importance of considering LS in the differential diagnosis of early-onset hypertension. The identification of a novel frameshift mutation of SCNN1B enriches the genetic spectrum of LS and has allowed treatment of this affected family to prevent severe complications.

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