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1.
Glob Chang Biol ; 29(17): 4898-4909, 2023 09.
Article in English | MEDLINE | ID: mdl-37337363

ABSTRACT

Aboveground, large and higher trophic-level organisms often respond more strongly to environmental changes than small and lower trophic-level organisms. However, whether this trophic or size-dependent sensitivity also applies to the most abundant animals, microscopic soil-borne nematodes, remains largely unknown. Here, we sampled an altitudinal transect across the Tibetan Plateau and applied a community-weighted mean (CWM) approach to test how differences in climatic and edaphic properties affect nematode CWM biomass at the level of community, trophic group and taxon mean biomass within trophic groups. We found that climatic and edaphic properties, particularly soil water-related properties, positively affected nematode CWM biomass, with no overall impact of altitude on nematode CWM biomass. Higher trophic-level omnivorous and predatory nematodes responded more strongly to climatic and edaphic properties, particularly to temperature, soil pH, and soil water content than lower trophic-level bacterivorous and fungivorous nematodes. However, these differences were likely not (only) driven by size, as we did not observe significant interactions between climatic and edaphic properties and mean biomasses within trophic groups. Together, our research implies a stronger, size-independent trophic sensitivity of higher trophic-level nematodes compared with lower trophic-level ones. Therefore, our findings provide new insights into the mechanisms underlying nematode body size structure in alpine grasslands and highlight that traits independent of size need to be found to explain increased sensitivity of higher trophic-level nematodes to climatic and edaphic properties, which might affect soil functioning.


Subject(s)
Nematoda , Animals , Biomass , Soil , Body Size , Water , Ecosystem
2.
Mol Ecol ; 32(13): 3747-3762, 2023 07.
Article in English | MEDLINE | ID: mdl-37060060

ABSTRACT

The processes governing soil bacteria biogeography are still not fully understood. It remains unknown how the importance of environmental filtering and dispersal differs between bacterial taxonomic and functional biogeography, and whether their importance is scale-dependent. We sampled soils across the Tibet plateau, with distances among plots ranging from 20 m to 1550 km. Taxonomic composition of bacterial community was characterized by 16S amplicon sequencing and functional community composition by qPCR targeting 9 functional groups involved in N dynamics. Factors representing climate, soil and plant community were measured to assess different facets of environmental dissimilarity. Both bacterial taxonomic and functional dissimilarities were more related to abiotic dissimilarity than biotic (vegetation) dissimilarity or distance. Taxonomic dissimilarity was mostly explained by differences in soil pH and mean annual temperature (MAT), while functional dissimilarity was linked to differences in soil N and P availabilities and N:P ratio. Soil pH and MAT remained the main determinants of taxonomic dissimilarity across spatial scales. In contrast, the explanatory variables of N-related functional dissimilarity varied across the scales, with soil moisture and organic matter having the highest role across short distances (<~330 km), and available P, N:P ratio and distance being important over long distances (>~660 km). Our results demonstrate how biodiversity dimension (taxonomic versus functional aspects) and spatial scale influence the factors driving soil bacterial biogeography.


Subject(s)
Soil Microbiology , Soil , Tibet , Soil/chemistry , Bacteria/genetics , Biodiversity , Plants
3.
Environ Microbiol ; 23(1): 464-477, 2021 01.
Article in English | MEDLINE | ID: mdl-33215802

ABSTRACT

Soil functions and processes are driven by complex microbial interactions. It is, therefore, critical to understand the coexistence patterns of soil microbiota, especially in fragile alpine ecosystems. We identified biogeographic patterns in the network-level topological features of the soil microbial co-occurrence network in the Tibetan alpine grasslands, based on high-throughput sequencing. We verified that soil pH was the most important environmental variable for predicting network-level topological features of soil microbial co-occurrence networks. Associations among soil microbiota were enhanced with increasing pH (5.17-8.92), and the network was the most stable at neutral pH. Moreover, node-level topological features suggested that the archaeal operational taxonomic units, compared with bacterial operational taxonomic units, hold a central role in the co-occurrence network. Network-level topological features revealed closer connections among soil microbiota in the steppe ecosystem than in the meadow ecosystem. Therefore, our study demonstrated that soil pH served as a critical environmental filter that influenced the potential associations and ecological signature of soil microbiota in the Tibetan alpine grasslands. These findings provide a new perspective on the distinct biogeographic patterns of co-occurrence networks, to explore the ecological role of soil microbiota and thus help manage soil bacterial and archaeal communities for provisioning alpine ecosystem services.


Subject(s)
Archaea/physiology , Microbial Interactions , Soil/chemistry , Archaea/classification , Archaea/genetics , Archaea/isolation & purification , Bacteria/classification , Bacteria/genetics , Bacteria/isolation & purification , Bacterial Physiological Phenomena , Ecosystem , Grassland , Hydrogen-Ion Concentration , Soil Microbiology , Tibet
4.
Sensors (Basel) ; 20(22)2020 Nov 23.
Article in English | MEDLINE | ID: mdl-33238498

ABSTRACT

Map-matching is a popular method that uses spatial information to improve the accuracy of positioning methods. The performance of map matching methods is closely related to spatial characteristics. Although several studies have demonstrated that certain map matching algorithms are affected by some spatial structures (e.g., parallel paths), they focus on the analysis of single map matching method or few spatial structures. In this study, we explored how the most commonly-used four spatial characteristics (namely forks, open spaces, corners, and narrow corridors) affect three popular map matching methods, namely particle filtering (PF), hidden Markov model (HMM), and geometric methods. We first provide a theoretical analysis on how spatial characteristics affect the performance of map matching methods, and then evaluate these effects through experiments. We found that corners and narrow corridors are helpful in improving the positioning accuracy, while forks and open spaces often lead to a larger positioning error. We hope that our findings are helpful for future researchers in choosing proper map matching algorithms with considering the spatial characteristics.

5.
Echocardiography ; 35(11): 1841-1846, 2018 11.
Article in English | MEDLINE | ID: mdl-30255620

ABSTRACT

OBJECTIVE: This in vitro study calculated longitudinal strain (LS) from different ultrasound systems (GE Vivid E9 and Philips IE 33) before and after myocardial infarct (MI) using a vendor-independent analysis software package (TomTec's 4D LV Analysis) to validate the variation of two ultrasound systems. METHODS: Ten freshly harvested porcine hearts were passively driven by a pulsatile pump apparatus at stroke volumes (SV) 30-70 mL. Full-volume three-dimensional echocardiography (3DE) data were acquired before and after MI using two different ultrasound systems. LS was derived from TomTec and validated against sonomicrometry data. RESULTS: Linear regression analyses showed excellent correlations between TomTec-calculated LS values and sonomicrometry data for both normal and simulated MI groups (GE: R2  = 0.72/0.68, Philip: R2  = 0.71/0.66). Bland-Altman analyses demonstrated overestimation of echo-derived strain values for all groups. Both ultrasound system-derived strain values demonstrated decreased LS after MI, and the average change in strain after infarct was roughly 30% in GE images and 25% in Philips images. CONCLUSIONS: Both GE and Philips echocardiographic systems can be analyzed with TomTec's program, and these images correlated well with sonomicrometry with acceptable variations.


Subject(s)
Echocardiography, Three-Dimensional/methods , Image Processing, Computer-Assisted/methods , Myocardial Infarction/diagnostic imaging , Myocardial Infarction/physiopathology , Animals , Disease Models, Animal , Heart/diagnostic imaging , Heart/physiopathology , In Vitro Techniques , Reproducibility of Results , Swine
6.
Springerplus ; 5(1): 1319, 2016.
Article in English | MEDLINE | ID: mdl-27563514

ABSTRACT

OBJECTIVE: The aim of this study was to investigate the value of color Doppler flow imaging (CDFI) in the diagnosis of glomus tumors in the extremities. METHODS: Sonography results of 62 nodules of 50 patients with glomus tumors in the extremities confirmed by surgery and pathology were analyzed retrospectively. RESULTS: The sex ratio in the group of 50 patients was (female:male) = 5.25:1. Glomus tumors were more common in women aged 30-40 years. 84 % (42/50) of glomus tumors occurred in the fingers, with the thumb being the most common. 2D results showed that 64.52 % (40/62) of 62 nodules were hypoechoic, 30.65 % (19/62) were heterogeneous echo, 4.84 % (3/62) were hyperechoic; 64.52 % (40/62) had a clear border, while 35.48 % (22/62) had an unclear border. CDFI showed that 38.71 % (24/62) had visible rich blood in the tumor, 35.48 % (22/62) had little visible blood in the tumor, and 25.81 % (16/62) had no significant intratumoral blood flow. Of the 50 patients, 92 % (46/50) showed a fixed contact pain, were sensitive to cold stimuli, which was improved by hot water and air, and for which anti-inflammatory treatment was ineffective. CONCLUSION: Glomus tumors in the extremities had certain ultrasound features, and its internal blood flow was diverse. Understanding this feature may be helpful for the diagnosis of non-typical glomus tumors.

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