Development of the oral resistome during the first decade of life.

Antibiotic overuse has promoted the spread of antimicrobial resistance (AMR) with significant health and economic consequences. Genome sequencing reveals the widespread presence of antimicrobial resistance genes (ARGs) in diverse microbial environments. Hence, surveillance of resistance reservoirs, like the rarely explored oral microbiome, is necessary to combat AMR. Here, we characterise the development of the paediatric oral resistome and investigate its role in dental caries in 221 twin children (124 females and 97 males) sampled at three time points over the first decade of life. From 530 oral metagenomes, we identify 309 ARGs, which significantly cluster by age, with host genetic effects detected from infancy onwards. Our results suggest potential mobilisation of ARGs increases with age as the AMR associated mobile genetic element, Tn916 transposase was co-located with more species and ARGs in older children. We find a depletion of ARGs and species in dental caries compared to health. This trend reverses in restored teeth. Here we show the paediatric oral resistome is an inherent and dynamic component of the oral microbiome, with a potential role in transmission of AMR and dysbiosis.

Invasive rabbits host immature Ixodes ticks at the urban-forest interface.

Introduced wildlife may be important alternative hosts for generalist ticks that cause health issues for humans and companion animals in urban areas, but to date are rarely considered as part of the tick-host community compared to native wildlife. In Australia, European rabbits, Oryctolagus cuniculus, are a widespread and abundant invasive species common to a range of human-modified ecosystems. To understand the potential role of rabbits in the life cycle of Australian ticks, we investigated the seasonal abundance of all tick life stages (larva, nymph, and adult) on rabbits collected from pest control programs in two urban forest remnants in Sydney, Australia. We also recorded whether larvae, nymphs, and adults were attached to the head, body, or limbs of rabbits to reveal patterns of tick attachment. Of the 2426 Ixodes ticks collected from 42 rabbits, larvae were by far the most abundant life stage (2360), peaking in abundance in autumn, while small numbers of nymphs (62) and adults (4) were present in winter and summer respectively. Larvae were found all over the body, whereas adults and nymphs were predominantly attached to the head, suggesting that the mature life stages use the host landscape differently, or that adults or nymphs may be groomed off the body. The most abundant tick species, as determined by morphology and DNA sequencing, was Ixodes holocyclus, a generalist tick responsible for significant human and companion animal health concerns in Australia. Our findings highlight the importance of understanding the role of introduced wildlife in tick dynamics particularly in novel ecosystems where non-native hosts may be more abundant than native hosts.

Counting Ticks (Acari: Ixodida) on Hosts Is Complex: A Review and Comparison of Methods.

Locating and counting parasites on a host is a fundamental aspect of ecological research and basic veterinary and clinical practice. Variability in the biology and behavior of both hosts and parasites creates many methodological, logistical, and ethical considerations that must be made to collect this deceptively simple measurement. We identified methods that are used to count ticks (Acari: Ixodida, Leach 1815) on hosts by reviewing the methods sections of relevant published studies. Unfortunately, there is no best method agreed upon by scientists to collect ticks from hosts. In general, we suggest that studies focusing purely on counting ticks on hosts should use more sensitive methods to determine patterns of tick distribution on the surfaces of unconscious or deceased hosts in order to provide host body regions to target in future studies to maximize tick detection ability and limit the costs of research for researchers and the host animals involved. As ticks are counted on hosts for many different reasons, researchers must be goal oriented and chose methods that are appropriate for addressing their specific aims.

Peri-urban black rats host a rich assembly of ticks and healthier rats have more ticks.

The black rat Rattus rattus has a distribution that includes much of Earth's terrestrial surface, and has adapted to exploit both habitats extensively modified by humans and rural habitats. Despite the fact that R. rattus are nearly ubiquitous, few studies have investigated urban or peri-urban R. rattus as potential hosts for ticks. In this study, we identified the species of ticks that parasitize R. rattus in a remnant bush area within Sydney, Australia. We then examined the relationship between ticks and R. rattus by testing several rat body characteristics as predictors of tick abundance. We show that larva and nymphs of five species of native Australian tick parasitize R. rattus in urban Australia. The most abundance species was Ixodes holocyclus, a tick of veterinary and human health concern. We found that ticks were more abundant on R. rattus in better condition, for larva and nymphs of I. holocyclus and I. tasmani. Rattus rattus supports a rich assembly of ticks in a remnant forest in urban Australia, and as the R. rattus in best condition have the most ticks, tick parasitism at the levels observed does not appear to negatively impact R. rattus. Our findings illustrate that R. rattus, and other human commensal species, may be important hosts for ticks in human modified environments.

Landscapes within landscapes: A parasite utilizes different ecological niches on the host landscapes of two host species.

Parasites are distributed across populations of hosts, but also across microhabitats on or inside hosts: together the host population distribution and "host landscape" distribution comprise a part of the ecological niche of a parasite. In this paper we examine how a generalist parasite, the tick Ixodes holocyclus, is distributed at both the host population and host landscape scales in two species of host (Perameles nasuta and Rattus rattus) that co-occur. We anaesthetized wildlife to locate ticks from five generalized host body regions; we then analysed the distribution of ticks among the populations of hosts (aggregation) and the distribution of ticks among the available host body regions as niches. Ixodes holocyclus is more aggregated in the R. rattus population. At the host landscape scale, I. holocyclus's utilized niche includes the entire surface of P. nasuta equally, while the niche on R. rattus is focused on the head. Differences in tick aggregation between host species may reflect tick habitat suitability at the host landscape scale, as well as differences in ecological and evolutionary histories. By exploring the distribution of parasites at multiple scales, including host landscapes, we can better understand the complex ecology of parasites.