Microbiome-mediated alleviation of tobacco replant problem via autotoxin degradation after long-term continuous cropping.

Continuous cropping often results in severe "replant problem," across various crops due to the autotoxins accumulation, soil acidification, pathogens proliferation, and microbial dysfunction. We unveiled a groundbreaking phenomenon that long-term continuous cropping (LTCC) can alleviate the tobacco replant problem. This mitigation occurs through the enrichment of autotoxin-degrading microbes, and the transformative impact is evident with even a modest application (10%) of LTCC soil to short-term continuous cropping (STCC) soil. Our investigation has pinpointed specific autotoxin-degrading bacteria, particularly the Pseudomonas and Burkholderia species, which exhibit the capacity to alleviate the tobacco replant problem in STCC soil. Their autotoxin-degrading mechanism using axenic culture and soil samples was also conducted via comprehensive analyses of microbiome and transcriptome approach. This research sheds light on the potential of LTCC as a strategic approach for sustainable agriculture, addressing replant problems and promoting the health of cropping systems. UV, ultraviolet; OD, optical density.

Integrated metabolomic and metagenomic strategies shed light on interactions among planting environments, rhizosphere microbiota, and metabolites of tobacco in Yunnan, China.

Changes in climatic factors and rhizosphere microbiota led plants to adjust their metabolic strategies for survival under adverse environmental conditions. Changes in plant metabolites can mediate crop growth and development and interact with rhizosphere microbiota of the plant rhizosphere. To understand the interactions among environmental factors, rhizosphere microbiota, and metabolites of tobacco, a study was conducted by using integrated metagenomic and metabolomic strategies at four typical representative tobacco planting sites in Yunnan, China. The results showed that the agronomical and biochemical traits were significantly affected by temperature, precipitation (PREP), soil pH, and altitude. Correlation analyses revealed a significant positive correlation of temperature with length, width, and area of the leaf, while PREP correlated with plant height and effective leaf numbers. Furthermore, total sugar and reducing sugar contents of baked leaves were significantly higher, while the total nitrogen and total alkaloid levels were lower in tobacco leaves at site with low PREP. A total of 770 metabolites were detected with the highest number of different abundant metabolites (DMs) at Chuxiong (CX) with low PREP as compared to the other three sites, in which secondary metabolites were more abundant in both leaves and roots of tobacco. A total of 8,479 species, belonging to 2,094 genera with 420 individual bins (including 13 higher-quality bins) harboring 851,209 CDSs were detected. The phyla levels of microorganisms such as Euryarchaeota, Myxococcota, and Deinococcota were significantly enriched at the CX site, while Pseudomonadota was enriched at the high-temperature site with good PREP. The correlation analyses showed that the metabolic compounds in low-PREP site samples were positively correlated with Diaminobutyricimonas, Nissabacter, Alloactinosynnema, and Catellatospora and negatively correlated with Amniculibacterium, Nordella, Noviherbaspirillum, and Limnobacter, suggesting that the recruitment of Diaminobutyricimonas, Nissabacter, Alloactinosynnema, and Catellatospora in the rhizosphere induces the production and accumulation of secondary metabolites (SMs) (e.g., nitrogen compounds, terpenoids, and phenolics) for increasing drought tolerance with an unknown mechanism. The results of this study may promote the production and application of microbial fertilizers and agents such as Diaminobutyricimonas and Alloactinosynnema to assemble synthetic microbiota community or using their gene resources for better cultivation of tobacco as well as other crops in drought environments.

Biochar stimulates NH4+ turnover while decreasing NO3- production and N2O emissions in soils under long-term vegetable cultivation.

A 15N-tracer incubation experiment was conducted to investigate the short-term effects of biochar on gross N transformation rates and nitrous oxide (N2O) emissions in soils under 1-year and 10-year vegetable cultivations. Biochar was applied at three rates: 0 (control), 10, and 30 t ha-1. Gross N transformation rates in the two vegetable soils varied in response to biochar application. Specifically, organic N oxidation into NO3- (ONorg) was almost negligible in the biochar-amended soils, and biochar application at 10 t ha-1 did not change either the rate of mineralization of organic N into NH4+ (MNorg) nor the inorganic N supply capacity (INS, ONorg + MNorg) in both soils, when compared to the control. However, 30 t ha-1 biochar decreased INS significantly, by inhibiting MNorg, in the 1-year vegetable soil but increased INS, by stimulating MNorg, in the 10-year vegetable soil. The rates of NH4+ oxidation into NO3- (ONH4), NO3- immobilization into organic N, and dissimilatory NO3- reduction into NH4+ were not influenced significantly by biochar application in the 1-year vegetable soil, resulting in no significant differences in NO3- production potential. Conversely, biochar decreased NO3- production potential significantly in the 10-year vegetable soil, by inhibiting ONH4 and increasing NH4+ immobilization into organic N (INH4), with more obvious effects under higher biochar application rates. Overall, the results demonstrate the capacity of biochar to stimulate NH4+ turnover and to decrease NO3- production potential in soil under long-term vegetable cultivation; however, the effect is limited under short-term vegetable cultivation. In addition, N2O emissions decreased significantly in biochar-amended vegetable soils.