Texture Analysis to Detect Cerebral Degeneration in Amyotrophic Lateral Sclerosis.

BACKGROUND: Evidence of cerebral degeneration is not apparent on routine brain MRI in amyotrophic lateral sclerosis (ALS). Texture analysis can detect change in images based on the statistical properties of voxel intensities. Our objective was to test the utility of texture analysis in detecting cerebral degeneration in ALS. A secondary objective was to determine whether the performance of texture analysis is dependent on image resolution. METHODS: High-resolution (0.5×0.5 mm2 in-plane) coronal T2-weighted MRI of the brain were acquired from 12 patients with ALS and 19 healthy controls on a 4.7 Tesla MRI system. Image data sets at lower resolutions were created by down-sampling to 1×1, 2×2, 3×3, and 4×4 mm2. Texture features were extracted from a slice encompassing the corticospinal tract at the different resolutions and tested for their discriminatory power and correlations with clinical measures. Subjects were also classified by visual assessment by expert reviewers. RESULTS: Texture features were different between ALS patients and healthy controls at 1×1, 2×2, and 3×3 mm2 resolutions. Texture features correlated with measures of upper motor neuron function and disability. Optimal classification performance was achieved when best-performing texture features were combined with visual assessment at 2×2 mm2 resolution (0.851 area under the curve, 83% sensitivity, 79% specificity). CONCLUSIONS: Texture analysis can detect subtle abnormalities in MRI of ALS patients. The clinical yield of the method is dependent on image resolution. Texture analysis holds promise as a potential source of neuroimaging biomarkers in ALS.

Cerebral Degeneration in Amyotrophic Lateral Sclerosis Revealed by 3-Dimensional Texture Analysis.

INTRODUCTION: Routine MR images do not consistently reveal pathological changes in the brain in ALS. Texture analysis, a method to quantitate voxel intensities and their patterns and interrelationships, can detect changes in images not apparent to the naked eye. Our objective was to evaluate cerebral degeneration in ALS using 3-dimensional texture analysis of MR images of the brain. METHODS: In a case-control design, voxel-based texture analysis was performed on T1-weighted MR images of 20 healthy subjects and 19 patients with ALS. Four texture features, namely, autocorrelation, sum of squares variance, sum average, and sum variance were computed. Texture features were compared between the groups by statistical parametric mapping and correlated with clinical measures of disability and upper motor neuron dysfunction. RESULTS: Texture features were different in ALS in motor regions including the precentral gyrus and corticospinal tracts. To a lesser extent, changes were also found in the thalamus, cingulate gyrus, and temporal lobe. Texture features in the precentral gyrus correlated with disease duration, and in the corticospinal tract they correlated with finger tapping speed. CONCLUSIONS: Changes in MR image textures are present in motor and non-motor regions in ALS and correlate with clinical features. Whole brain texture analysis has potential in providing biomarkers of cerebral degeneration in ALS.

Voxel-based texture analysis of the brain.

This paper presents a novel voxel-based method for texture analysis of brain images. Texture analysis is a powerful quantitative approach for analyzing voxel intensities and their interrelationships, but has been thus far limited to analyzing regions of interest. The proposed method provides a 3D statistical map comparing texture features on a voxel-by-voxel basis. The validity of the method was examined on artificially generated effects as well as on real MRI data in Alzheimer's Disease (AD). The artificially generated effects included hyperintense and hypointense signals added to T1-weighted brain MRIs from 30 healthy subjects. The AD dataset included 30 patients with AD and 30 age/sex matched healthy control subjects. The proposed method detected artificial effects with high accuracy and revealed statistically significant differences between the AD and control groups. This paper extends the usage of texture analysis beyond the current region of interest analysis to voxel-by-voxel 3D statistical mapping and provides a hypothesis-free analysis tool to study cerebral pathology in neurological diseases.

Robust volumetric texture classification of magnetic resonance images of the brain using local frequency descriptor.

This paper presents a method for robust volumetric texture classification. It also proposes 2D and 3D gradient calculation methods designed to be robust to imaging effects and artifacts. Using the proposed 2D method, the gradient information is extracted on the XYZ orthogonal planes at each voxel and used to form a local coordinate system. The local coordinate system and the local 3D gradient computed by the proposed 3D gradient calculator are then used to define volumetric texture features. It is shown that the presented gradient calculation methods can be efficiently implemented by convolving with 2D and 3D kernels. The experimental results demonstrate that the proposed gradient operators and the texture features are robust to imaging effects and artifacts, such as blurriness and noise in 2D and 3D images. The proposed method is compared with three state-of- the-art volumetric texture classification methods the 3D gray level cooccurance matrix, 3D local binary patterns, and second orientation pyramid on magnetic resonance imaging data of the brain. The experimental results show the superiority of the proposed method in accuracy, robustness, and speed.

Rotation invariant local frequency descriptors for texture classification.

This paper presents a novel rotation invariant method for texture classification based on local frequency components. The local frequency components are computed by applying 1-D Fourier transform on a neighboring function defined on a circle of radius R at each pixel. We observed that the low frequency components are the major constituents of the circular functions and can effectively represent textures. Three sets of features are extracted from the low frequency components, two based on the phase and one based on the magnitude. The proposed features are invariant to rotation and linear changes of illumination. Moreover, by using low frequency components, the proposed features are very robust to noise. While the proposed method uses a relatively small number of features, it outperforms state-of-the-art methods in three well-known datasets: Brodatz, Outex, and CUReT. In addition, the proposed method is very robust to noise and can remarkably improve the classification accuracy especially in the presence of high levels of noise.

A parallel method to improve medical image transmission.

The staggering number of images acquired by modern modalities requires new approaches for medical data transmission. There have been several attempts to improve data transmission time between medical imaging systems. These attempts were mostly based on compression. Although the compression methods can help in many cases, they are sometimes ineffectual in high-speed networks. This paper introduces parallelism to provide an effective method of medical data transmission over both local area network (LAN) and wide area network (WAN). It is based on the Digital Imaging and Communications in Medicine (DICOM) protocol and uses parallel TCP connections in storage services within the protocol. Using the proposed interface in our method, current medical imaging applications can take advantage of parallelism without any modification. Experimental results show a speedup of about 1.3 to 1.5 for CT images and relatively high speedup of about 2.2 to 3.5 times for magnetic resonance (MR) images over LAN. The transmission time is improved drastically over WAN. The speedup is about 16.1 for CT images and about 5.6 to 11.5 for MR images.