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1.
Antibodies (Basel) ; 8(2)2019 Apr 05.
Article in English | MEDLINE | ID: mdl-31544833

ABSTRACT

Antibodies have become one of the most successful therapeutics for a number of oncology and inflammatory diseases. So far, central nervous system (CNS) indications have missed out on the antibody revolution, while they remain 'hidden' behind several hard to breach barriers. Among the various antibody modalities, single-domain antibodies (sdAbs) may hold the 'key' to unlocking the access of antibody therapies to CNS diseases. The unique structural features of sdAbs make them the smallest monomeric antibody fragments suitable for molecular targeting. These features are of particular importance when developing antibodies as modular building blocks for engineering CNS-targeting therapeutics and imaging agents. In this review, we first introduce the characteristic properties of sdAbs compared to traditional antibodies. We then present recent advances in the development of sdAbs as potential therapeutics across brain barriers, including their use for the delivery of biologics across the blood-brain and blood-cerebrospinal fluid (CSF) barriers, treatment of neurodegenerative diseases and molecular imaging of brain targets.

2.
Appl Microbiol Biotechnol ; 99(20): 8549-62, 2015 Oct.
Article in English | MEDLINE | ID: mdl-25936376

ABSTRACT

Clostridium difficile is a leading cause of death from gastrointestinal infections in North America. Antibiotic therapy is effective, but the high incidence of relapse and the rise in hypervirulent strains warrant the search for novel treatments. Surface layer proteins (SLPs) cover the entire C. difficile bacterial surface, are composed of high-molecular-weight (HMW) and low-molecular-weight (LMW) subunits, and mediate adherence to host cells. Passive and active immunization against SLPs has enhanced hamster survival, suggesting that antibody-mediated neutralization may be an effective therapeutic strategy. Here, we isolated a panel of SLP-specific single-domain antibodies (VHHs) using an immune llama phage display library and SLPs isolated from C. difficile hypervirulent strain QCD-32g58 (027 ribotype) as a target antigen. Binding studies revealed a number of VHHs that bound QCD-32g58 SLPs with high affinity (K D = 3-6 nM) and targeted epitopes located on the LMW subunit of the SLP. The VHHs demonstrated melting temperatures as high as 75 °C, and a few were resistant to the gastrointestinal protease pepsin at physiologically relevant concentrations. In addition, we demonstrated the binding specificity of the VHHs to the major C. difficile ribotypes by whole cell ELISA, where all VHHs were found to bind 001 and 027 ribotypes, and a subset of antibodies were found to be broadly cross-reactive in binding cells representative of 012, 017, 023, and 078 ribotypes. Finally, we showed that several of the VHHs inhibited C. difficile QCD-32g58 motility in vitro. Targeting SLPs with VHHs may be a viable therapeutic approach against C. difficile-associated disease.


Subject(s)
Anti-Bacterial Agents/metabolism , Antibodies, Bacterial/metabolism , Bacterial Proteins/antagonists & inhibitors , Clostridioides difficile/drug effects , Membrane Glycoproteins/antagonists & inhibitors , Single-Domain Antibodies/metabolism , Anti-Bacterial Agents/isolation & purification , Antibodies, Bacterial/isolation & purification , Clostridioides difficile/physiology , Epitopes/metabolism , Locomotion/drug effects , Peptide Library , Protein Binding , Single-Domain Antibodies/isolation & purification
3.
Protein Eng Des Sel ; 27(6): 191-8, 2014 Jun.
Article in English | MEDLINE | ID: mdl-24742504

ABSTRACT

Camelid heavy-chain antibody variable domains (VHHs) are emerging as potential antimicrobial reagents. We have engineered a previously isolated VHH (FlagV1M), which binds Campylobacter jejuni flagella, for greater thermal and proteolytic stability. Mutants of FlagV1M were obtained from an error-prone polymerase chain reaction library that was panned in the presence of gastrointestinal (GI) proteases. Additional FlagV1M mutants were obtained through disulfide-bond engineering. Each approach produced VHHs with enhanced thermal stability and protease resistance. When the beneficial mutations from both approaches were combined, a hyperstabilized VHH was created with superior stability. The hyperstabilized VHH bound C. jejuni flagella with wild-type affinity and was capable of potently inhibiting C. jejuni motility in assays performed after sequential digestion with three major GI proteases, demonstrating the remarkable stability imparted to the VHH by combining our engineering approaches.


Subject(s)
Anti-Bacterial Agents/pharmacology , Campylobacter jejuni/physiology , Single-Chain Antibodies/pharmacology , Amino Acid Sequence , Amino Acid Substitution , Anti-Bacterial Agents/chemistry , Campylobacter jejuni/drug effects , Chymotrypsin/chemistry , Directed Molecular Evolution , Flagella/immunology , Flagellin/immunology , Hydrogen-Ion Concentration , Molecular Sequence Data , Pepsin A/chemistry , Protein Binding , Protein Denaturation , Proteolysis , Single-Chain Antibodies/chemistry , Single-Chain Antibodies/genetics , Trypsin/chemistry
4.
MAbs ; 6(1): 219-35, 2014.
Article in English | MEDLINE | ID: mdl-24423624

ABSTRACT

We set out to gain deeper insight into the potential of antibody light chain variable domains (VLs) as immunotherapeutics. To this end, we generated a naïve human VL phage display library and, by using a method previously shown to select for non-aggregating antibody heavy chain variable domains (VHs), we isolated a diversity of VL domains by panning the library against B cell super-antigen protein L. Eight domains representing different germline origins were shown to be non-aggregating at concentrations as high as 450 µM, indicating VL repertoires are a rich source of non-aggregating domains. In addition, the VLs demonstrated high expression yields in E. coli, protein L binding and high reversibility of thermal unfolding. A side-by-side comparison with a set of non-aggregating human VHs revealed that the VLs had similar overall profiles with respect to melting temperature (T(m)), reversibility of thermal unfolding and resistance to gastrointestinal proteases. Successful engineering of a non-canonical disulfide linkage in the core of VLs did not compromise the non-aggregation state or protein L binding properties. Furthermore, the introduced disulfide bond significantly increased their T(m)s, by 5.5-17.5 ° C, and pepsin resistance, although it somewhat reduced expression yields and subtly changed the structure of VLs. Human VLs and engineered versions may make suitable therapeutics due to their desirable biophysical features. The disulfide linkage-engineered VLs may be the preferred therapeutic format because of their higher stability, especially for oral therapy applications that necessitate high resistance to the stomach's acidic pH and pepsin.


Subject(s)
Immunoglobulin Light Chains/chemistry , Single-Chain Antibodies/chemistry , Administration, Oral , Escherichia coli , Hot Temperature , Humans , Hydrogen-Ion Concentration , Immunoglobulin Light Chains/therapeutic use , Protein Stability , Recombinant Proteins/chemistry , Single-Chain Antibodies/therapeutic use
5.
Eur J Cancer ; 50(4): 713-21, 2014 Mar.
Article in English | MEDLINE | ID: mdl-22918079

ABSTRACT

Carcinoembryonic antigen-related cell adhesion molecule 6 (CEACAM6) is over-expressed in pancreatic cancer cells, and it is associated with the progression of pancreatic cancer. We tested a single domain antibody (sdAb) targeting CEACAM6, 2A3, which was isolated previously from a llama immune library, and an Fc conjugated version of this sdAb, to determine how they affect the pancreatic cancer cell line BxPC3. We also compared the effects of the antibodies to gemcitabine. Gemcitabine and 2A3 slowed down cancer cell proliferation. However, only 2A3 retarded cancer cell invasion, angiogenesis within the cancer mass and BxPC3 cell MMP-9 activity, three features important for tumour growth and metastasis. The IC50s for 2A3, 2A3-Fc and gemcitabine were determined as 6.5µM, 8µM and 12nM, respectively. While the 2A3 antibody inhibited MMP-9 activity by 33% compared to non-treated control cells, gemcitabine failed to inhibit MMP-9 activity. Moreover, 2A3 and 2A3-Fc inhibited invasion of BxPC3 by 73% compared to non-treated cells. When conditioned media that were produced using 2A3- or 2A3-Fc-treated BxPC3 cells were used in a capillary formation assay, the capillary length was reduced by 21% and 49%, respectively. Therefore 2A3 is an ideal candidate for treating tumours that over-express CEACAM6.


Subject(s)
Antigens, CD/immunology , Carcinoma, Pancreatic Ductal/pathology , Cell Adhesion Molecules/immunology , Cell Movement/drug effects , Cell Proliferation/drug effects , Neovascularization, Pathologic/prevention & control , Pancreatic Neoplasms/pathology , Single-Domain Antibodies/pharmacology , Animals , Camelids, New World , Carcinoma, Pancreatic Ductal/blood supply , Cells, Cultured , Drug Evaluation, Preclinical , GPI-Linked Proteins/immunology , Human Umbilical Vein Endothelial Cells/drug effects , Human Umbilical Vein Endothelial Cells/physiology , Humans , Neoplasm Invasiveness , Neovascularization, Pathologic/pathology , Neovascularization, Physiologic/drug effects , Pancreatic Neoplasms/blood supply , Pancreatic Neoplasms
6.
PLoS One ; 8(7): e69495, 2013.
Article in English | MEDLINE | ID: mdl-23894495

ABSTRACT

Small recombinant antibody fragments (e.g. scFvs and VHHs), which are highly tissue permeable, are being investigated for antivenom production as conventional antivenoms consisting of IgG or F(ab')2 antibody fragments do not effectively neutralize venom toxins located in deep tissues. However, antivenoms composed entirely of small antibody fragments may have poor therapeutic efficacy due to their short serum half-lives. To increase serum persistence and maintain tissue penetration, we prepared low and high molecular mass antivenom antibodies. Four llama VHHs were isolated from an immune VHH-displayed phage library and were shown to have high affinity, in the low nM range, for α-cobratoxin (α-Cbtx), the most lethal component of Naja kaouthia venom. Subsequently, our highest affinity VHH (C2) was fused to a human Fc fragment to create a VHH2-Fc antibody that would offer prolonged serum persistence. After in planta (Nicotiana benthamiana) expression and purification, we show that our VHH2-Fc antibody retained high affinity binding to α-Cbtx. Mouse α-Cbtx challenge studies showed that our highest affinity VHHs (C2 and C20) and the VHH2-Fc antibody effectively neutralized lethality induced by α-Cbtx at an antibody:toxin molar ratio as low as ca. 0.75×:1. Further research towards the development of an antivenom therapeutic involving these anti-α-Cbtx VHHs and VHH2-Fc antibody molecules should involve testing them as a combination, to determine whether they maintain tissue penetration capability and low immunogenicity, and whether they exhibit improved serum persistence and therapeutic efficacy.


Subject(s)
Antibodies, Neutralizing/immunology , Antibody Affinity , Camelids, New World , Cobra Neurotoxin Proteins/immunology , Immunoglobulin Fc Fragments/immunology , Single-Domain Antibodies/immunology , Amino Acid Sequence , Animals , Antibodies, Neutralizing/chemistry , Antibodies, Neutralizing/genetics , Elapid Venoms/immunology , Half-Life , Humans , Immunity, Humoral , Immunization , Immunoglobulin Fc Fragments/chemistry , Immunoglobulin Fc Fragments/genetics , Kinetics , Male , Mice , Molecular Sequence Data , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/immunology , Single-Domain Antibodies/chemistry , Single-Domain Antibodies/genetics
7.
PLoS One ; 8(2): e55098, 2013.
Article in English | MEDLINE | ID: mdl-23390515

ABSTRACT

Listeria monocytogenes serotype 4b is responsible for a high percentage of fatal cases of food-borne infection. In a previous study, we created 15 monoclonal antibodies (MAbs) against a ≈ 77 kDa antigen that is associated with the cell surface of live L. monocytogenes serotype 4b cells. Here we report an extensive characterization of these MAbs to further their development as diagnostic reagents. The ≈ 77 kDa target antigen was identified by mass spectrometry and N-terminal sequencing to be IspC, a novel surface associated autolysin. Epitope localization experiments revealed that each of the 15 MAbs recognized the C-terminal cell-wall binding domain of IspC. The presence of IspC was shown to be highly conserved within L. monocytogenes serotype 4b, as evidenced by a strong reaction between anti-IspC MAbs and all 4b isolates. To determine the range of cross-reactivity with other L. monocytogenes serotypes ELISA was used to test each MAb against multiple isolates from each of the L. monocytogenes serotypes. Of the 15 MAbs, five: M2774, M2775, M2780, M2790 and M2797, showed specificity for L. monocytogenes serotype 4b and only cross reacted with serotype 4ab isolates. The kinetics of the interaction between each of the MAbs and IspC was measured using surface plasmon resonance. The MAbs M2773, M2792, M2775, M2797 and M2781 each had very low dissociation constants (4.5 × 10(-9) to 1.2 × 10(-8) M). While several of these antibodies have properties which could be useful in diagnostic tests, the combined high fidelity and affinity of M2775 for the IspC protein and serotype 4b isolates, makes it a particularly promising candidate for use in the development of a specific L. monocytogenes serotype 4b diagnostic test.


Subject(s)
Antibodies, Monoclonal , Antigens, Bacterial/analysis , Bacterial Proteins/analysis , Cell Wall/chemistry , Epitopes/chemistry , Listeria monocytogenes/chemistry , N-Acetylmuramoyl-L-alanine Amidase/analysis , Amino Acid Sequence , Antibodies, Monoclonal/immunology , Antibody Specificity , Antigens, Bacterial/immunology , Bacterial Proteins/immunology , Binding Sites , Cell Wall/immunology , Cross Reactions , Enzyme-Linked Immunosorbent Assay , Epitopes/immunology , Kinetics , Listeria monocytogenes/immunology , Mass Spectrometry , Molecular Sequence Data , N-Acetylmuramoyl-L-alanine Amidase/immunology , Protein Binding , Sequence Alignment , Serotyping , Surface Plasmon Resonance
8.
PLoS One ; 8(12): e83928, 2013.
Article in English | MEDLINE | ID: mdl-24391847

ABSTRACT

Campylobacter jejuni is the leading cause of bacterial foodborne illness in the world, with symptoms ranging from acute diarrhea to severe neurological disorders. Contaminated poultry meat is a major source of C. jejuni infection, and therefore, strategies to reduce this organism in poultry, are expected to reduce the incidence of Campylobacter-associated diseases. We have investigated whether oral administration of C. jejuni-specific single-domain antibodies would reduce bacterial colonization levels in chickens. Llama single-domain antibodies specific for C. jejuni were isolated from a phage display library generated from the heavy chain IgG variable domain repertoire of a llama immunized with C. jejuni flagella. Two flagella-specific single-domain antibodies were pentamerized to yield high avidity antibodies capable of multivalent binding to the target antigen. When administered orally to C. jejuni-infected two-day old chicks, the pentabodies significantly reduced C. jejuni colonization in the ceca. In vitro, the motility of the bacteria was also reduced in the presence of the flagella-specific pentabodies, suggesting the mechanism of action is through either direct interference with flagellar motility or antibody-mediated aggregation. Fluorescent microscopy and Western blot analyses revealed specific binding of the anti-flagella pentabodies to the C. jejuni flagellin.


Subject(s)
Antibodies, Bacterial/pharmacology , Campylobacter Infections/veterinary , Campylobacter jejuni/immunology , Cell Movement/physiology , Gastrointestinal Tract/microbiology , Poultry Diseases/prevention & control , Single-Domain Antibodies/pharmacology , Administration, Oral , Amino Acid Sequence , Animals , Antibodies, Bacterial/administration & dosage , Antibodies, Bacterial/immunology , Blotting, Western , Camelids, New World , Campylobacter Infections/immunology , Campylobacter Infections/microbiology , Campylobacter Infections/prevention & control , Cecum/microbiology , Cell Surface Display Techniques , Chickens , Enzyme-Linked Immunosorbent Assay , Female , Flagella/immunology , Flagella/metabolism , Flagellin/immunology , Flagellin/metabolism , Gastrointestinal Tract/immunology , Immunization , Male , Microscopy, Fluorescence , Molecular Sequence Data , Poultry Diseases/immunology , Poultry Diseases/microbiology , Sequence Homology, Amino Acid , Single-Domain Antibodies/administration & dosage , Single-Domain Antibodies/immunology , Surface Plasmon Resonance
9.
Curr Protoc Immunol ; 103: 2.17.1-2.17.57, 2013 Nov 18.
Article in English | MEDLINE | ID: mdl-24510545

ABSTRACT

Engineered monoclonal antibody fragments have gained market attention due to their versatility and tailor-made potential and are now considered to be an important part of future immunobiotherapeutics. Single-domain antibodies (sdAbs), also known as nanobodies, are derived from VHHs [variable domains (V) of heavy-chain-only antibodies (HCAb)] of camelid heavy-chain antibodies. These nature-made sdAbs are well suited for various applications due to their favorable characteristics such as small size, ease of genetic manipulation, high affinity and solubility, overall stability, resistance to harsh conditions (e.g., low pH, high temperature), and low immunogenicity. Most importantly, sdAbs have the feature of penetrating into cavities and recognizing hidden epitopes normally inaccessible to conventional antibodies, mainly due to their protruding CDR3/H3 loops. In this unit, we will present and discuss comprehensive and step-by-step protocols routinely practiced in our laboratory for isolating sdAbs from immunized llamas (or other members of the Camelidae family) against target antigens using phage-display technology. Expression, purification, and characterization of the isolated sdAbs will then be described, followed by presentation of several examples of applications of sdAbs previously characterized in our laboratory and elsewhere.


Subject(s)
Single-Domain Antibodies/immunology , Animals , Bacteria/immunology , Blotting, Western , Camelids, New World/immunology , Chromatography, Gel , Electrophoresis, Polyacrylamide Gel , Enzyme-Linked Immunosorbent Assay , Epitope Mapping , Gene Library , Humans , Immunization , Surface Plasmon Resonance
10.
Protein Eng Des Sel ; 25(10): 581-9, 2012 Oct.
Article in English | MEDLINE | ID: mdl-22942392

ABSTRACT

To enhance their therapeutic potential, human antibody heavy chain variable domains (V(H)s) would benefit from increased thermostability. The highly conserved disulfide linkage that connects Cys23 and Cys104 residues in the core of V(H) domains is crucial to their stability and function. It has previously been shown that the introduction of a second disulfide linkage can increase the thermostability of camelid heavy-chain antibody variable domains (V(H)Hs). Using four model domains we demonstrate that this strategy is also applicable to human V(H) domains. The introduced disulfide linkage, formed between Cys54 and Cys78 residues, increased the thermostability of V(H)s by 14-18°C. In addition, using a novel hexa-histidine capture technology, circular dichroism, turbidity, size exclusion chromatography and multiangle light scattering measurements, we demonstrate reduced V(H) aggregation in domains with the Cys54-Cys78 disulfide linkage. However, we also found that the engineered disulfide linkage caused conformational changes, as indicated by reduced binding of the V(H)s to protein A. This indicates that it may be prudent to use the synthetic V(H) libraries harboring the engineered disulfide linkage before screening for affinity reagents. Such strategies may increase the number of thermostable binders.


Subject(s)
Disulfides/chemistry , Immunoglobulin Heavy Chains/chemistry , Immunoglobulin Heavy Chains/genetics , Immunoglobulin Variable Region/chemistry , Immunoglobulin Variable Region/genetics , Protein Engineering , Amino Acid Sequence , Amino Acid Substitution , Humans , Molecular Sequence Data , Protein Conformation , Protein Stability , Sequence Alignment , Temperature
11.
Protein Eng Des Sel ; 25(6): 313-8, 2012 Jun.
Article in English | MEDLINE | ID: mdl-22490957

ABSTRACT

A synthetic human V(L) phage display library, created by the randomization of all complementarity-determining regions (CDRs) in a V(L) scaffold, was panned against three test antigens to determine the propensity of the library to yield non-aggregating binders. A total of 22 binders were isolated against the test antigens and the majority (20) were monomeric. Thus, human V(L) repertoires provide an efficient source of non-aggregating binders and represent an attractive alternative to human V(H) repertoires, which are notorious for containing high proportions of aggregating species. Moreover, the solubility of V(L)s, in contrast to V(H)s, appears much less CDR dependent.


Subject(s)
Immunoglobulin Light Chains/metabolism , Peptide Library , Single-Chain Antibodies/metabolism , Amino Acid Sequence , Antibody Affinity , Antigens, Bacterial/genetics , Antigens, Bacterial/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Bacterial Toxins/genetics , Bacterial Toxins/metabolism , Base Sequence , Cloning, Molecular , Enzyme-Linked Immunosorbent Assay , Humans , Immunoglobulin Light Chains/chemistry , Immunoglobulin Light Chains/genetics , Molecular Sequence Data , Protein Binding , Single-Chain Antibodies/chemistry , Single-Chain Antibodies/genetics
12.
PLoS One ; 6(11): e28218, 2011.
Article in English | MEDLINE | ID: mdl-22140551

ABSTRACT

The extreme pH and protease-rich environment of the upper gastrointestinal tract is a major obstacle facing orally-administered protein therapeutics, including antibodies. Through protein engineering, several Clostridium difficile toxin A-specific heavy chain antibody variable domains (V(H)Hs) were expressed with an additional disulfide bond by introducing Ala/Gly54Cys and Ile78Cys mutations. Mutant antibodies were compared to their wild-type counterparts with respect to expression yield, non-aggregation status, affinity for toxin A, circular dichroism (CD) structural signatures, thermal stability, protease resistance, and toxin A-neutralizing capacity. The mutant V(H)Hs were found to be well expressed, although with lower yields compared to wild-type counterparts, were non-aggregating monomers, retained low nM affinity for toxin A, albeit the majority showed somewhat reduced affinity compared to wild-type counterparts, and were capable of in vitro toxin A neutralization in cell-based assays. Far-UV and near-UV CD spectroscopy consistently showed shifts in peak intensity and selective peak minima for wild-type and mutant V(H)H pairs; however, the overall CD profile remained very similar. A significant increase in the thermal unfolding midpoint temperature was observed for all mutants at both neutral and acidic pH. Digestion of the V(H)Hs with the major gastrointestinal proteases, at biologically relevant concentrations, revealed a significant increase in pepsin resistance for all mutants and an increase in chymotrypsin resistance for the majority of mutants. Mutant V(H)H trypsin resistance was similar to that of wild-type V(H)Hs, although the trypsin resistance of one V(H)H mutant was significantly reduced. Therefore, the introduction of a second disulfide bond in the hydrophobic core not only increases V(H)H thermal stability at neutral pH, as previously shown, but also represents a generic strategy to increase V(H)H stability at low pH and impart protease resistance, with only minor perturbations in target binding affinities. These are all desirable characteristics for the design of protein-based oral therapeutics.


Subject(s)
Antibodies/chemistry , Antibodies/metabolism , Peptide Hydrolases/metabolism , Protein Engineering/methods , Temperature , Amino Acid Sequence , Bacterial Toxins/immunology , Chromatography, Gel , Circular Dichroism , Disulfides/metabolism , Enterotoxins/immunology , Humans , Hydrogen-Ion Concentration , Immunoglobulin Heavy Chains/chemistry , Immunoglobulin Heavy Chains/isolation & purification , Immunoglobulin Variable Region/chemistry , Immunoglobulin Variable Region/isolation & purification , Kinetics , Mass Spectrometry , Molecular Sequence Data , Mutant Proteins/chemistry , Mutant Proteins/isolation & purification , Neutralization Tests , Protein Stability , Protein Structure, Tertiary , Protein Unfolding
13.
J Biol Chem ; 286(11): 8961-76, 2011 Mar 18.
Article in English | MEDLINE | ID: mdl-21216961

ABSTRACT

Clostridium difficile is a leading cause of nosocomial infection in North America and a considerable challenge to healthcare professionals in hospitals and nursing homes. The gram-positive bacterium produces two high molecular weight exotoxins, toxin A (TcdA) and toxin B (TcdB), which are the major virulence factors responsible for C. difficile-associated disease and are targets for C. difficile-associated disease therapy. Here, recombinant single-domain antibody fragments (V(H)Hs), which specifically target the cell receptor binding domains of TcdA or TcdB, were isolated from an immune llama phage display library and characterized. Four V(H)Hs (A4.2, A5.1, A20.1, and A26.8), all shown to recognize conformational epitopes, were potent neutralizers of the cytopathic effects of toxin A on fibroblast cells in an in vitro assay. The neutralizing potency was further enhanced when V(H)Hs were administered in paired or triplet combinations at the same overall V(H)H concentration, suggesting recognition of nonoverlapping TcdA epitopes. Biacore epitope mapping experiments revealed that some synergistic combinations consisted of V(H)Hs recognizing overlapping epitopes, an indication that factors other than mere epitope blocking are responsible for the increased neutralization. Further binding assays revealed TcdA-specific V(H)Hs neutralized toxin A by binding to sites other than the carbohydrate binding pocket of the toxin. With favorable characteristics such as high production yield, potent toxin neutralization, and intrinsic stability, these V(H)Hs are attractive systemic therapeutics but are more so as oral therapeutics in the destabilizing environment of the gastrointestinal tract.


Subject(s)
Antibodies, Bacterial/immunology , Antibodies, Neutralizing/immunology , Bacterial Toxins/immunology , Clostridioides difficile/immunology , Enterotoxins/immunology , Immunoglobulin Heavy Chains/immunology , Single-Chain Antibodies/immunology , Animals , Antibodies, Bacterial/genetics , Antibodies, Neutralizing/genetics , Bacterial Toxins/genetics , Camelids, New World , Clostridioides difficile/genetics , Enterocolitis, Pseudomembranous/immunology , Enterocolitis, Pseudomembranous/therapy , Enterotoxins/genetics , Epitopes/genetics , Epitopes/immunology , Humans , Immunoglobulin Heavy Chains/genetics , Male , Protein Structure, Tertiary , Single-Chain Antibodies/genetics
14.
PLoS One ; 5(11): e13904, 2010 Nov 22.
Article in English | MEDLINE | ID: mdl-21124920

ABSTRACT

One of the major causes of morbidity and mortality in man and economically important animals is bacterial infections of the gastrointestinal (GI) tract. The emergence of difficult-to-treat infections, primarily caused by antibiotic resistant bacteria, demands for alternatives to antibiotic therapy. Currently, one of the emerging therapeutic alternatives is the use of lytic bacteriophages. In an effort to exploit the target specificity and therapeutic potential of bacteriophages, we examined the utility of bacteriophage tailspike proteins (Tsps). Among the best-characterized Tsps is that from the Podoviridae P22 bacteriophage, which recognizes the lipopolysaccharides of Salmonella enterica serovar Typhimurium. In this study, we utilized a truncated, functionally equivalent version of the P22 tailspike protein, P22sTsp, as a prototype to demonstrate the therapeutic potential of Tsps in the GI tract of chickens. Bacterial agglutination assays showed that P22sTsp was capable of agglutinating S. Typhimurium at levels similar to antibodies and incubating the Tsp with chicken GI fluids showed no proteolytic activity against the Tsp. Testing P22sTsp against the three major GI proteases showed that P22sTsp was resistant to trypsin and partially to chymotrypsin, but sensitive to pepsin. However, in formulated form for oral administration, P22sTsp was resistant to all three proteases. When administered orally to chickens, P22sTsp significantly reduced Salmonella colonization in the gut and its further penetration into internal organs. In in vitro assays, P22sTsp effectively retarded Salmonella motility, a factor implicated in bacterial colonization and invasion, suggesting that the in vivo decolonization ability of P22sTsp may, at least in part, be due to its ability to interfere with motility… Our findings show promise in terms of opening novel Tsp-based oral therapeutic approaches against bacterial infections in production animals and potentially in humans.


Subject(s)
Bacteriophage P22/metabolism , Salmonella Infections, Animal/drug therapy , Salmonella typhimurium/growth & development , Viral Tail Proteins/administration & dosage , Administration, Oral , Agglutination/immunology , Animals , Bacterial Translocation/drug effects , Cecum/drug effects , Cecum/microbiology , Chickens , Gastrointestinal Tract/drug effects , Gastrointestinal Tract/microbiology , Glycoside Hydrolases , Liver/drug effects , Liver/microbiology , Peptide Hydrolases/metabolism , Salmonella Infections, Animal/microbiology , Salmonella typhimurium/immunology , Salmonella typhimurium/virology , Spleen/drug effects , Spleen/microbiology , Viral Tail Proteins/immunology , Viral Tail Proteins/metabolism
15.
Methods Mol Biol ; 634: 309-30, 2010.
Article in English | MEDLINE | ID: mdl-20676993

ABSTRACT

Recombinant antibody fragments are significant therapeutic and diagnostic reagents. As such, their efficacy depends heavily on their affinities and biophysical properties. Thus, mutagenesis approaches have been extensively applied to recombinant antibodies to improve their affinity, stability, and solubility. Among the existing recombinant antibody variants, human V(H) domains stand out as the ones with the general need of solubility engineering at some point during their development; this solubility engineering step transforms V(H)s into nonaggregating, functional entities, rendering them useful as therapeutic and diagnostic reagents. Here, we present one of several approaches that have been employed to develop nonaggregating human V(H) domains. We apply an in vitro site-directed mutagenesis approach to an aggregating human V(H) domain by means of a splice overlap extension technique. The resultant mutant V(H)s are nonaggregating in contrast to the parent wild type V(H) and less prone to aggregation following thermal unfolding.


Subject(s)
Mutagenesis, Site-Directed , Biophysics , Circular Dichroism , Humans , Surface Plasmon Resonance
16.
Cancer Lett ; 289(1): 81-90, 2010 Mar 01.
Article in English | MEDLINE | ID: mdl-19716651

ABSTRACT

The large molecular size of antibody drugs is considered one major factor preventing them from becoming more efficient therapeutics. Variable regions of heavy chain antibodies (HCAbs), or single-domain antibodies (sdAbs), are ideal building blocks for smaller antibodies due to their molecular size and enhanced stability. In the search for better antibody formats for in vivo imaging and/or therapy of cancer, three types of sdAb-based molecules directed against epidermal growth factor receptor (EGFR) were constructed, characterized and tested. Eleven sdAbs were isolated from a phage display library constructed from the sdAb repertoire of a llama immunized with a variant of EGFR. A pentameric sdAb, or pentabody, V2C-EG2 was constructed by fusing one of the sdAbs, EG2, to a pentamerization protein domain. A chimeric HCAb (cHCAb), EG2-hFc, was constructed by fusing EG2 to the fragment crystallizable (Fc) of human IgG1. Whereas EG2 and V2C-EG2 localized mainly in the kidneys after i.v. injection, EG2-hFc exhibited excellent tumor accumulation, and this was largely attributed to its long serum half life, which is comparable to that of IgGs. The moderate size (approximately 80 kDa) and intact human Fc make HCAbs a unique antibody format which may outperform whole IgGs as imaging and therapeutic reagents.


Subject(s)
Drug Delivery Systems , ErbB Receptors/drug effects , Immunoglobulin Fragments/pharmacology , Amino Acid Sequence , Animals , Camelids, New World , Cell Line, Tumor , ErbB Receptors/genetics , Female , Humans , Immunoglobulin Fragments/administration & dosage , Immunoglobulin Fragments/genetics , Male , Mice , Mice, Inbred BALB C , Molecular Sequence Data , Pancreatic Neoplasms/drug therapy , Protein Engineering , Sequence Alignment
17.
Bioconjug Chem ; 20(10): 1966-74, 2009 Oct 21.
Article in English | MEDLINE | ID: mdl-19751063

ABSTRACT

Because antibodies are highly target-specific and nanoparticles possess diverse, material-dependent properties that can be exploited in order to label and potentially identify biomolecules, the development of antibody-nanoparticle conjugates (nanoconjugates) has huge potential in biodiagnostics. Here, we describe a novel superparamagnetic nanoconjugate, one whose recognition component is a single-domain antibody. It is highly active toward its target Staphylococcus aureus, displays long shelf life, lacks cross-reactivity inherent to traditional homologue whole antibodies, and captures a few dozen S. aureus cells in a mixed cell population with ~100% efficiency and specificity. We ascribe the excellent performance of our nanoconjugate to its single-domain antibody component and recommend it as a general purpose recognition element.


Subject(s)
Antibodies, Bacterial/chemistry , Bacteriological Techniques/methods , Ferric Compounds/chemistry , Magnetite Nanoparticles , Silicon Dioxide/chemistry , Staphylococcus aureus/isolation & purification , Antibodies, Bacterial/immunology , Magnetite Nanoparticles/chemistry , Nanoconjugates , Protein Structure, Tertiary , Salmonella , Sensitivity and Specificity , Staphylococcal Infections/diagnosis , Staphylococcus aureus/immunology
18.
Methods Mol Biol ; 525: 323-36, xv, 2009.
Article in English | MEDLINE | ID: mdl-19252853

ABSTRACT

Antibody has become a major category of therapeutics. However, IgG, the primary molecular format of existing antibody drugs, has some major shortcomings such as undesirable pharmacokinetics, high dose requirement, and high production cost, partially due to its large molecular size. Much efforts have been made to address these issues, which usually led to antibodies or antibody fragments with smaller size. However, in most cases these changes also resulted in complete or partial deletion of fragment crystallizable (Fc), which is known to be crucial for a long serum half-life through binding to FcRn and antibody-mediated cell killing through binding to Fcgamma receptors and complement. Single-domain antibodies (sdAbs) derived from camelid heavy-chain antibodies (HCAbs) provide an excellent building block for constructing antibodies with moderate size yet with an intact Fc. We describe in this chapter the construction, production, and purification of chimeric HCAbs (cHCAbs), that is, fusion of camelid sdAb to human Fc. The cHCAb has a molecular size approximately half that of IgG (80 kDa vs. 150 kDa). Production is achieved through a transient expression with a human embryonic kidney (HEK) expression system, which can rapidly provide hundreds of milligrams to low-gram quantities of soluble and glycosylated recombinant antibodies for early-stage drug development.


Subject(s)
Antibodies/immunology , Immunoglobulin Heavy Chains/biosynthesis , Molecular Biology/methods , Recombinant Fusion Proteins/biosynthesis , Antibodies/isolation & purification , Cell Line , Genetic Vectors/genetics , Humans , Immunoglobulin Heavy Chains/isolation & purification , Protein Structure, Tertiary , Receptors, Fc/immunology
19.
Methods Mol Biol ; 525: 187-216, xiii, 2009.
Article in English | MEDLINE | ID: mdl-19252860

ABSTRACT

The particular interest in VH antibody fragments stems from the fact that they can rival their "naturally occurring" single-domain antibody (sdAb) counterparts (camelid VHHs and shark VNARs) with regard to such desirable characteristics as stability, solubility, expression, and ability to penetrate cryptic epitopes and outperform them in terms of less immunogenicity, a much valued property in human immunotherapy applications. However, human VHs are typically prone to aggregation. Various approaches for developing non-aggregating human VHs with binding specificities have relied on a combination of recombinant DNA technology and phage-display technology. VH gene libraries are constructed synthetically by randomizing the CDRs of a single VH scaffold fused to a gene encoding a phage coat protein. Recombinant phage expressing the resulting VH libraries in fusion with the pIII protein is propagated in Escherichia coli. Monoclonal phage displaying VHs with specificities for target antigens are isolated from the libraries by a process called panning. The exertion of stability pressure in addition to binding pressure during panning ensures that the isolated VH binders are also non-aggregating. The genes encoding the desired VHs selected from the libraries are packaged within the phage particles, linking genotype and phenotype, hence making possible the identification of the selected VHs through identifying its physically linked genotype. Here, we describe the application of recombinant DNA and phage-display technologies for the construction of a phage-displayed human VH library, the panning of the library against a protein, and the expression, purification, and characterization of non-aggregating VHs isolated by panning.


Subject(s)
Immunoglobulin Heavy Chains/chemistry , Immunoglobulin Heavy Chains/isolation & purification , Immunoglobulin Variable Region/chemistry , Immunoglobulin Variable Region/isolation & purification , Molecular Biology/methods , Peptide Library , Animals , Antibody Affinity/immunology , Bacteriophages , Chromatography, Gel , Cloning, Molecular , Enzyme-Linked Immunosorbent Assay , Hot Temperature , Humans , Protein Denaturation , Protein Structure, Quaternary , Sus scrofa
20.
Methods Mol Biol ; 502: 341-64, 2009.
Article in English | MEDLINE | ID: mdl-19082566

ABSTRACT

Techniques developed over the past 20 years for the display of foreign peptides and proteins on the surfaces of filamentous bacteriophages have been a major driving force in the rapid development of recombinant antibody technology in recent years. With phage display of antibodies as one of its key components, recombinant antibody technology has led to the development of an increasing number of therapeutic monoclonal antibodies. Antibody gene libraries are fused to a gene encoding a phage coat protein. Recombinant phage expressing the resulting antibody libraries in fusion with the coat protein are propagated in Escherichia coli. Phage displaying monoclonal antibodies with specificities for target antigens are isolated from the libraries by a process called panning. The genes encoding the desired antibodies selected from the libraries are packaged within the phage particles, linking genotype and phenotype. Here, we describe the application of this technology to the construction of a phage-displayed single-domain antibody (sdAb) library based on the heavy chain antibody repertoire of a llama, the panning of the library against a peptide antigen and the expression, purification, and characterization of sdAbs isolated by panning.


Subject(s)
Antibodies, Monoclonal/genetics , Peptide Library , Recombinant Proteins/isolation & purification , Models, Biological
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