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5.
Theor Appl Genet ; 117(8): 1225-40, 2008 Nov.
Article in English | MEDLINE | ID: mdl-18712342

ABSTRACT

A recombinant inbred line (RIL) population and a set of advanced lines from multiple crosses were used to investigate the leaf rust (Puccinia triticina Eriks.) resistance carried by the durum wheat cultivar Creso and its derivatives (Colosseo and Plinio). One hundred seventy-six RILs from the cross Colosseo x Lloyd were tested under artificial rust inoculation in the field. The response at the seedling stage was also investigated. A major QTL (QLr.ubo-7B.2) for leaf rust resistance controlling both the seedling and the adult open field based-response was mapped on 7BL, with the favourable allele inherited from Colosseo. QLr.ubo-7B.2 showed R2 and LOD peak values for the area under disease progress curve (AUDPC) equal to 72.9% and 44.5, respectively. The presence and location of QLr.ubo-7B.2 was validated by a linkage disequilibrium-based test using two-year field data of 62 advanced lines from 21 crosses with Creso, Colosseo or Plinio as resistance donors. QLr.ubo-7B.2 maps in a gene-dense region (7BL10-0.78-1.00) carrying several genes/QTLs in wheat and barley for resistance to rusts and other fungal diseases.


Subject(s)
Chromosome Mapping , Chromosomes, Plant , Quantitative Trait Loci , Triticum/genetics , Alleles , Basidiomycota/pathogenicity , Breeding , Genetic Markers , Genotype , Immunity, Innate , Linkage Disequilibrium , Microsatellite Repeats , Plant Diseases/genetics , Plant Diseases/microbiology , Triticum/microbiology
6.
Genome ; 50(4): 373-84, 2007 Apr.
Article in English | MEDLINE | ID: mdl-17546096

ABSTRACT

The determination of genetic relatedness among elite materials of crop species allows for more efficient management of breeding programs and for the protection of breeders' rights. Seventy simple sequence repeats (SSRs) and 234 amplified fragment length polymorphisms (AFLPs) were used to profile a collection of 58 durum wheat (Triticum durum Desf.) accessions, representing the most important extant breeding programs. In addition, 42 phenotypic traits, including the morphological characteristics recommended for the official distinctness, uniformity, and stability tests, were recorded. The correlation between the genetic similarities obtained with the 2 marker classes was high (r = 0.81), whereas lower values were observed between molecular and phenotypic data (r = 0.46 and 0.56 for AFLPs and SSRs, respectively). Morphological data, even if sampled in high numbers, largely failed to describe the pattern of genetic similarity, according to known pedigree data and the indications provided by molecular markers.


Subject(s)
Minisatellite Repeats/genetics , Phenotype , Polymorphism, Genetic , Triticum/genetics , Alleles , Phylogeny , Triticum/anatomy & histology , Triticum/classification
7.
Genome ; 50(4): 385-99, 2007 Apr.
Article in English | MEDLINE | ID: mdl-17546097

ABSTRACT

The study of direct ancestry relationships provides information with which to determine essential derivation. SSR profiles were used to determine the pattern of relatedness among 134 durum wheat accessions, representing the most important modern durum wheat gene pools. Simple sequence repeat (SSR)- and amplified fragment length polymorphism (AFLP)-based genetic similarities among cultivars with accurate pedigrees were compared with pedigree-based coefficients of parentage. Sizeable departures of molecular similarities from the expected ones were observed, indicating the unreliability of inferring the pattern of genetic relatedness from the coefficient of parentage. Case studies consisting of parent-progeny cultivar trios and pairs, identified on the basis of their registered pedigree, were studied to evaluate the probability of ancestry of each progeny cultivar, compared with all the remaining accessions. Rare alleles and haplotype sharing were also explored. When the results did not agree with the registered parentages, SSR markers provided information with which to identify the most probable parents (or the corresponding "breeding lineages") in the collection.


Subject(s)
Pedigree , Phylogeny , Triticum/genetics , Alleles , Genetic Markers , Haplotypes/genetics , Minisatellite Repeats/genetics , Random Amplified Polymorphic DNA Technique , Triticum/classification
8.
Theor Appl Genet ; 107(5): 783-97, 2003 Sep.
Article in English | MEDLINE | ID: mdl-12845433

ABSTRACT

It has been argued that the level of genetic diversity in the modern durum wheat ( Triticum turgidum L. var. durum) elite germplasm may have declined due to the high selection pressure applied in breeding programs. In this study, 58 accessions covering a wide spectrum of genetic diversity of the cultivated durum wheat gene pool were characterized with 70 microsatellite loci (or simple sequence repeats, SSRs). On average, SSRs detected 5.6 different allelic variants per locus, with a mean diversity index (DI) equal to 0.56, thus revealing a diversity content comparable to those previously observed with SSRs in other small-grain cereal gene pools. The mean genetic similarity value was equal to 0.44. A highly diagnostic SSR set has been identified. A high variation in allele size was detected among SSR loci, suggesting a different suitability of these loci for estimating genetic diversity. The B genome was characterized by an overall polymorphism significantly higher than that of the A genome. Genetic diversity is organised in well-distinct sub-groups identified by the corresponding foundation-genotypes. A large portion (92.7%) of the molecular variation detected within the group of 45 modern cvs was accounted for by SSR alleles tracing back to ten foundation-genotypes; among those, the most recent CIMMYT-derived founders were genetically distant from the old Mediterranean ones. On the other hand, rare alleles were abundant, suggesting that a large number of genetic introgressions contributed to the foundation of the well-diversified germplasm herein considered. The profiles of recently released varieties indicate that the level of genetic diversity present in the modern durum wheat germplasm has actually increased over time.


Subject(s)
Genes, Plant/genetics , Genetic Variation , Microsatellite Repeats , Repetitive Sequences, Nucleic Acid , Triticum/genetics , Alleles , DNA, Plant , Evolution, Molecular , Genome, Plant , Phylogeny , Polymorphism, Genetic , Selection, Genetic , Time Factors
10.
Thromb Res ; 64(6): 647-58, 1991 Dec 15.
Article in English | MEDLINE | ID: mdl-1839200

ABSTRACT

Using an ACL 300R coagulometer (Instrumentation Laboratory) we assessed the clinical usefulness of a new method to measure PS activity (PS:Act), based on the prolongation of prothrombin time of a mixture of diluted plasma sample, PS depleted plasma previously incubated with Protac for protein C activation, bovine thromboplastin and calcium ions. The results were compared with those from immunological assays. PS:Act was measured in 42 apparently healthy subjects, in 12 patients with hereditary PS deficiency (HPSD group) diagnosed on the basis of immunologic tests and in 48 patients with episodes of juvenile venous thromboembolism at least three months prior to testing (JVTE group). All the HPSD patients had PS:Act below the normal range (less than 62%). In JVTE group 9 patients (18.7%) showed abnormal results for PS:Act, 4 (8.3%) had low levels of free PS:Ag; all patients had normal total PS:Ag levels. Levels of antiphospholipid antibodies (immunologic test) were normal in the 9 JVTE patients with low PS:Act. When all the results were considered together (n = 102), the correlation coefficient between PS:Act and free PS:Ag was 0.78 (p less than 0.01).


Subject(s)
Blood Proteins/metabolism , Glycoproteins/metabolism , Thrombophlebitis/blood , Adolescent , Adult , Blood Chemical Analysis/methods , Blood Proteins/deficiency , Blood Proteins/genetics , Glycoproteins/deficiency , Glycoproteins/genetics , Humans , Male , Middle Aged , Protein S , Prothrombin Time , Reference Values , Reproducibility of Results
11.
Clin Chem ; 37(5): 714-9, 1991 May.
Article in English | MEDLINE | ID: mdl-2032326

ABSTRACT

This collaborative study, organized by the Hemostasis Subcommittee of C.I.S.M.E.L., evaluated the accuracy, precision, and comparability of the following six widely used fibrinogen assays: total clottable fibrinogen (Blombäck and Blombäck), clotting time (Von Clauss), turbidimetry (Ellis and Stransky), Chromotime System, prothrombin time (PT)-derived, and radial immunodiffusion (RID). The same frozen samples, with normal and high contents of fibrinogen, were examined in four laboratories. The methods were calibrated with an internal standard whose fibrinogen content was determined gravimetrically. Both the Von Clauss and the RID methods were reliable, accurate, and precise, if adequate calibration was used. The PT-derived method was highly reproducible, but had some problems with accuracy. We demonstrate that an adequate calibration procedure is indispensable for reliable fibrinogen measurements whatever method is used. Because neither the calibration procedures proposed by the manufacturers nor the use of lyophilized commercial plasmas is adequate for this purpose, we urge that an international standard for fibrinogen measurement be promptly established.


Subject(s)
Fibrinogen/analysis , Calibration , Evaluation Studies as Topic , Humans , Methods , Reference Standards , Reproducibility of Results
12.
Haemostasis ; 21(2): 68-76, 1991.
Article in English | MEDLINE | ID: mdl-1959800

ABSTRACT

In this study we report the data obtained from extensive haemostatic testing of 25 patients undergoing orthotopic liver transplantation and the results of an open randomized pilot trial of antithrombin III concentrate administration during surgery. Marked differences in transfusional needs and in pre- and intraoperative blood coagulation and fibrinolytic changes were observed between recipients with liver cirrhosis and those with primary biliary cirrhosis. In the former, the increases in tissue-type plasminogen activator activity, total euglobulin fibrinolytic activity, and fibrin-derived degradation products occurred earlier and were more marked, as were the signs of increased thrombin formation. Supplementation of antithrombin III concentrate during surgery failed to induce significant changes in the main parameters studied and in the transfusional needs.


Subject(s)
Antithrombin III/therapeutic use , Blood Coagulation/physiology , Fibrinolysis/physiology , Liver Cirrhosis, Biliary/blood , Liver Cirrhosis/blood , Liver Transplantation/physiology , Adult , Cholangitis, Sclerosing/blood , Cholangitis, Sclerosing/complications , Female , Humans , Intraoperative Care , Liver Cirrhosis/complications , Liver Cirrhosis/surgery , Liver Cirrhosis, Biliary/surgery , Middle Aged , Pilot Projects
13.
Ric Clin Lab ; 20(2): 167-76, 1990.
Article in English | MEDLINE | ID: mdl-2196664

ABSTRACT

Fibrinogen levels are considered a useful indicator in several pathological conditions and recent epidemiological studies have indicated a relationship between fibrinogen levels and increased risk of cardiovascular disease. An accurate measurement of this protein is therefore recommended and the Italian Committee for Standardization of Methods in Hematology and Laboratory has carried out a collaborative study to determine accuracy, precision and comparability of results obtained by six different methods, i.e., 1. Blombäck and Blombäck method, 2. clotting assay according to von Clauss, 3. radial immunodiffusion according to Mancini et al., 4. total amount of clottable fibrinogen by means of turbidimetric assay according to Ellis and Stransky, and 5. with ChromotimeSystem, 6. prothrombin time (PT)-derived fibrinogen assay on ACL coagulometer. The most accurate resulted the von Clauss method, but only if calibrated with an internal standard; in fact, when the manufacturer's tables are used, the method proved to be highly inaccurate. The best precision, both intra- and between-laboratory, was obtained by the PT-derived test on ACL. On the basis of this still incomplete evaluation of the CISMEL study data, we can conclude that: i. some methods used in clinical laboratories give accurate results only after adequate calibration; ii. a reference standard pool may be a valid tool for calibration and for a better between-laboratory comparability; iii. a predilution of the samples with high fibrinogen levels seems indicated; iv. automation markedly increases the precision of methods.


Subject(s)
Fibrinogen/analysis , Blood Coagulation Tests/methods , Cardiovascular Diseases/blood , Cardiovascular Diseases/epidemiology , Chemical Precipitation , Humans , Immunochemistry , Predictive Value of Tests
15.
Int Angiol ; 8(1): 47-52, 1989.
Article in English | MEDLINE | ID: mdl-2768958

ABSTRACT

The pharmacodynamic properties of a new LMWH (alfa-LMWH) were investigated in 8 healthy volunteers after single subcutaneous administrations of 7,500, 15,000 and 30,000 anti-XaU doses at weekly intervals. Anti-Xa and anti-IIa heparin activities were monitored together with aPTT, thrombin time, bleeding time and euglobulin lysis time. No relevant changes in bleeding time or major side-effects were ever recorded. A group of 26 patients submitted to gynaecological surgery were then investigated to determine the dosage schedule for prophylaxis of post-operative deep vein thrombosis. Two subgroups received daily subcutaneous doses of 7,500 and 15,000 anti-XaU alfa-LMWH respectively, beginning 2 h before surgery; the third subgroup received 5,000 IU calcium heparin three times daily over the seven postoperative days. The following tests were peri-operatively monitored: anti-Xa heparin activity, aPTT, PT, fibrinogen, Antithrombin III. No differences in intra-operative bleeding or side-effects were recorded. On the basis of the levels of anti-Xa heparin activity and the negligible effects on aPTT, the dose of 7500 anti-XaU was selected at single daily administration for thromboprophylaxis in gynecological surgery.


Subject(s)
Blood Coagulation/drug effects , Genital Diseases, Female/surgery , Heparin/pharmacology , Aged , Factor Xa , Female , Humans , Middle Aged , Molecular Weight , Partial Thromboplastin Time , Reference Values , Serine Proteinase Inhibitors , Time Factors
17.
Minerva Med ; 72(21): 1361-6, 1981 May 26.
Article in Italian | MEDLINE | ID: mdl-7231787

ABSTRACT

The possible chronic nephrotoxicity of solvents has been investigated in a group of workers in the footwear industry. A number of indices of renal function were assessed in all subjects and a qualitative study of proteinuria carried out. The noted reduction in VFG would appear to be proportional to exposure doses. The other parameters, particularly the electrolytic balance, do not lend themselves to pathogenetic interpretations. The existence of a chronic nephrotoxicity of solvents cannot, however, be excluded.


Subject(s)
Kidney Function Tests , Occupational Medicine , Shoes , Solvents/toxicity , Adult , Air Pollutants, Occupational , Chromium/metabolism , Creatinine/urine , Female , Humans , Kidney/drug effects , Male , Middle Aged , Osmotic Pressure , Potassium/metabolism , Proteinuria/diagnosis , Sodium/metabolism , Uric Acid/metabolism
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