Long-term agro-management strategies shape soil bacterial community structure in dryland wheat systems.

Soil microbes play a crucial role in soil organic matter decomposition and nutrient cycling and are influenced by management practices. Therefore, quantifying the impacts of various agricultural management practices on soil microbiomes and their activity is crucial for making informed management decisions. This study aimed to assess the impact of various management systems on soil bacterial abundance and diversity, soil enzyme activities and carbon mineralization potential in wheat-based systems. To accomplish this, soil samples from 0 to 15 cm depth were collected from ongoing long-term field trials in eastern Oregon region under wheat (Triticum aestivum L.)-fallow (WF), WF with different tillage (WT), wheat-pea (Pisum sativum L.) (WP), WF under different crop residue management (CR) and natural undisturbed/unmanaged grassland pasture (GP). These trials consisted of an array of treatments like tillage intensities, nitrogen rates, organic amendments, and seasonal residue burning. This study was a part of the Soil Health Institute's North American Project to Evaluate Soil Health measurements (NAPESHM). Bacterial community structure was determined using amplicon sequencing of the V4 region of 16SrRNA genes and followed the protocols of the Earth Microbiome Project. In addition, extracellular enzyme activities, and carbon mineralization potential (1d-CO2) were measured. Among different trials, 1d-CO2 in WT, WP, and CR studies averaged 53%, 51% and 87% lower than GP systems, respectively. Enzyme activities were significantly greater in GP compared to the other managements and followed similar trend as respiration. We observed higher evenness in GP and higher richness in spring residue burning treatment of CR study. Our results indicated that species evenness is perhaps a better indicator of soil health in comparison to other indices in dryland wheat systems.

When do cover crops reduce nitrate leaching? A global meta-analysis.

The global increases in the surface and groundwater nitrate (NO3 - ) concentrations due to synthetic fertilizer input have emerged as major sustainability threats to terrestrial and aquatic ecosystems. Cover crops can reportedly reduce nitrate leaching from croplands. However, the underlying mechanisms and the effectiveness of cover crops in reducing nitrate leaching across species, soil types, agronomic management, and climates remain elusive. We conducted a global meta-analysis to evaluate the effects of cover crops on nitrate leaching and water drainage. A random-effects analysis was established to investigate seven moderating variables in 41 articles. Results showed that globally, cover crops reduced nitrate leaching by 69% compared with fallow while demonstrating no effect on water drainage. Overall, cover crops from Brassicaceae and Poaceae families showed the greatest effect with 75% and 52% reduction in nitrate leaching, respectively. Cover cropping on Ultisols, Histosols, and Inceptisols resulted in the greatest reduction in nitrate leaching (77%, 78%, and 77%, respectively). Greater efficacy of cover crops at reducing nitrate leaching was evident with increasing soil sand content. In general, cover crops appeared to perform better to reduce nitrate leaching in vegetable systems compared to field crops. Cover cropping on conventional tillage resulted in a 63% reduction in nitrate leaching compared with no-tillage (50%) and reduced tillage (38%) systems. The impact of cover crops on water drainage was nonsignificant which implies that nitrate leaching control by cover crops is unlikely exerted through reducing water drainage. This study brings further insight into the intrinsic factors affecting cover crop efficacy and management practices that enhance cover crop potential in reducing nitrate leaching from agricultural systems.

Fusarium Crown Rot of Winter Wheat Influenced by Resource Competition Near a Tree Windbreak.

Fusarium crown rot becomes most severe when wheat is stressed for water near the time of anthesis. This research examined the potential to study crown rot in the gradient of resource competition near a tree windbreak. Winter wheat was planted for 2 years into a field infested by Fusarium pseudograminearum and bordered by 17-m-high Austrian pines. Crown rot, plant growth and yield, and soil water content were evaluated at six distances (5 to 46 m) perpendicular to the tree line in strip plots inoculated or not inoculated with the pathogen. Crown rot was minor (<5% whiteheads) in noninoculated strips and greater in inoculated strips (26 to 35%) in a 21-m zone from 9 to 30 m from the tree line (0.5-1.8 times the tree height; 0.5-1.8H). At 46 m (2.7H), crown rot was similar in noninoculated and inoculated strips (2 to 5% whiteheads). Whiteheads and culm browning were roughly the reverse of soil water depletion by tree roots. Grain yield at 23 m compared with 46 m was reduced by 33 to 35% in noninoculated plots and by 43 to 49% in inoculated plots. It is possible to study associations between water stress and Fusarium crown rot in the zone of resource competition near windbreaks.

Long-term Management Effects and Temperature Sensitivity of Soil Organic Carbon in Grassland and Agricultural Soils.

Soil organic carbon (SOC) is integral to soil health and agroecosystem resilience. Despite much research, understanding of temperature sensitivity of SOC under long-term agricultural management is very limited. The main objective of this study was to evaluate SOC and nitrogen (N) dynamics under grasslands and winter wheat (Triticum aestivum L)-based crop rotations in the inland Pacific Northwest (IPNW), USA, and measure SOC mineralization under ambient and elevated incubation temperatures. Soil samples were collected from 0-10 and 10-20 cm depths from an undisturbed grassland (GP), winter wheat-pea (Pisum sativum L) rotations under conventional tillage (WP-CT) and no-tillage (WP-NT), and winter wheat-fallow rotation under conventional tillage (WF-CT) and analyzed for SOC and N pools. Soil samples were incubated at 20 °C and 30 °C for 10 weeks, and SOC mineralization rates were estimated using the first order kinetic model. The GP had the greatest amounts of SOC, total N (TN), and microbial biomass carbon (MBC) and WP rotations had higher inorganic N content than other treatments. The SOC mineralization at elevated incubation temperature was 72-177% more than at the ambient temperature, and the greatest effect was observed in GP. The SOC storage under a given management did not have consistent effects on soil carbon (C) and N mineralization under elevated temperature. However, soil disturbance under WP-CT and WF-CT accelerated SOC mineralization leading to soil C loss. Reducing tillage, integrating legumes into crop rotations, and growing perennial grasses could minimize SOC loss and have the potential to improve soil health and agroecosystem resilience under projected climate warming.

Rapid Quantification of Soilborne Pathogen Communities in Wheat-Based Long-Term Field Experiments.

Rainfed experiments operated continuously for up to 84 years in semiarid eastern Oregon are among the oldest agronomic trials in North America. Disease incidence and severity had been quantified visually but quantification of inoculum density had not been attempted. Natural inoculum of 17 fungal and nematode pathogens were quantified for each of 2 years on eight trials using DNA extracts from soil. Crop type, tillage, rotation, soil fertility, year, and their interactions had large effects on the pathogens. Fusarium culmorum and Pratylenchus thornei were more dominant than F. pseudograminearum and P. neglectus where spring crops were grown, and the opposite species dominances occurred where winter wheat was the only crop. Bipolaris sorokiniana and Phoma pinodella were restricted to the presence of spring cereals and pulse crops, respectively. Helgardia spp. occurred in winter wheat-fallow rotations but not in annual winter wheat. Gaeumannomyces graminis var. tritici was more prevalent in cultivated than noncultivated soils and the opposite generally occurred for Rhizoctonia solani AG-8. Densities of Pythium spp. clade F were high but were also influenced by treatments. Significant treatment effects and interactions were more prevalent in two long-standing (>50-year) annually cropped experiments (29%) than two long-standing 2-year wheat-fallow rotations (14%). Associations among pathogens occurred mostly in an 84-year-old annual cereals experiment. This survey provided guidance for research on dynamics of root-infecting pathogens of rainfed field crops and identified two pathogens (Drechslera tritici-repentis and P. pinodella) not previously identified at the location.

Biochar production and applications in sub-Saharan Africa: opportunities, constraints, risks and uncertainties.

Sub-Saharan Africa (SSA) experiences soil degradation, food and livelihood insecurity, environmental pollution and lack of access to energy. Biochar has gained international research attention, but few studies have investigated the potential of biochar to address the challenges in SSA. This paper seeks to identify and evaluate generic potential opportunities and constraints associated with biochar application in sub-Saharan Africa using Zimbabwe as case study. Specific objectives were to; (1) identify and quantify feedstocks for biochar production; (2) review literature on the biochar properties, and evaluate its potential applications in agriculture, environmental remediation and energy provision, and (3) identify research gaps, risks and constraints associated with biochar technology. Biochar feedstocks in Zimbabwe were estimated to be 9.9 Mton yr(-1), predominantly derived from manure (88%) and firewood (10%). This will yield 3.5, 1.7 and 3.1 Mton yr(-1) of biochar, bio-oil and synthetic gas, respectively. Land application of the 3.5 Mton yr(-1) of biochar (≈63% C) would sequester approximately 2.2 Mton yr(-1) of soil carbon in Zimbabwe alone, while simultaneously minimizing the environmental and public health risks, and greenhouse gas emissions associated with solid organic wastes. Biochar potentially enhances soil and crop productivity through enhanced nutrient and soil moisture availability, amelioration of acidic soils and stimulation of microbial diversity and activity. Due to its excellent adsorption properties, biochar has potential applications in industrial and environmental applications including water and wastewater treatment, remediation and revegetation of contaminated soils and water. Biochar products have energy values comparable or higher than those of traditional biomass fuels; thereby making them ideal alternative sources of energy especially for poor households without access to electricity. Before the benefits of biochar can be realized in SSA, there is need to overcome multiple risks and constraints such as lack of finance, socio-economic constraints including negative perceptions and attitudes among both researchers and consumers, and environmental and public health risks. Therefore, there is need to conduct fundamental research to demonstrate the benefits of biochar applications, and develop policy framework and criteria for its production and subsequent adoption.

Influence of Semiarid Cropping Systems on Root Diseases and Inoculum Density of Soilborne Pathogens.

There is interest in converting the 2-year rotation of rainfed winter wheat with cultivated fallow in the Pacific Northwest of the United States into direct-seed (no-till) systems that include chemical fallow, spring cereals, and food-legume and brassica crops. Eight cropping systems in a low-precipitation region (<330 mm) were compared over 9 years to determine effects of changes on diseases. Fusarium crown rot was more prevalent in wheat following cultivated than chemical fallow, and Rhizoctonia root rot was more severe when winter wheat was rotated with chemical fallow than with no-till winter pea. Take-all occurred even during the driest years and was more severe on annual spring wheat than on annual spring barley. Inoculum density (picograms of DNA per gram of soil) differed (α < 0.05) among cropping systems for Fusarium culmorum, F. pseudograminearum, Gaeumannomyces graminis var. tritici, and Pythium spp. but not for Rhizoctonia solani AG-8. Phoma medicaginis var. pinodella was detected only where winter pea was planted frequently. This is the first report of P. medicaginis as a component of the dryland stem rot complex of pea in north-central Oregon. Results of this investigation will provide guidance for developing crop species with resistance to Fusarium crown rot and black stem of pea.

Effects of Crop Rotations and Tillage on Pratylenchus spp. in the Semiarid Pacific Northwest United States.

There is interest in converting rainfed cropping systems in the Pacific Northwest from a 2-year rotation of winter wheat and cultivated fallow to direct-seed (no-till) systems that include chemical fallow, spring cereals, and food legume and brassica crops. Little information is available regarding effects of these changes on plant-parasitic nematodes. Eight cropping systems in a low-precipitation region (<330 mm) were compared over 9 years. Each phase of each rotation occurred each year. The density of Pratylenchus spp. was greater in cultivated than chemical fallow, became greater with increasing frequency of host crops, and was inversely associated with precipitation (R2 = 0.92, α < 0.01). Densities after harvesting mustard, spring wheat, winter wheat, and winter pea were greater (α < 0.01) than after harvesting spring barley or spring pea. Camelina also produced low densities. Winter wheat led to a greater density of Pratylenchus neglectus and spring wheat led to a greater density of P. thornei. Density of Pratylenchus spp. was correlated (R2 = 0.88, α < 0.01) but generally higher when detected by real-time polymerase chain reaction on DNA extracts from soil than when detected by a traditional method. Selection of different Pratylenchus spp. by different wheat cultivars or growth habit must be addressed to minimize the level of nematode risk to future plantings of intolerant crops.

Speciation and long- and short-term molecular-level dynamics of soil organic sulfur studied by X-ray absorption near-edge structure spectroscopy.

We investigated speciation, oxidative state changes, and long- and short-term molecular-level dynamics of organic S after 365 d of aerobic incubation with and without the addition of sugarcane residue using XANES spectroscopy. Soil samples were collected from the upper 15 cm of undisturbed grasslands since 1880, from undisturbed grasslands since 1931, and from cultivated fields since 1880 in the western United States. We found three distinct groups of organosulfur compounds in these grassland-derived soils: (i) strongly reduced (S to S) organic S that encompasses thiols, monosulfides, disulfides, polysulfides, and thiophenes; (ii) organic S in intermediate oxidation (S to S) states, which include sulfoxides and sulfonates; and (iii) strongly oxidized (S) organic S, which comprises ester-SO-S. The first two groups represent S directly linked to C and accounted for 80% of the total organic S detected by XANES from the undisturbed soils. Aerobic incubation without the addition of sugarcane residue led to a 21% decline in organanosulfur compounds directly linked to C and to up to an 82% increase inorganic S directly bonded to O. Among the C-bonded S compounds, low-valence thiols, sulfides, thiophenic S, and intermediate-valence sulfoxide S seem to be highly susceptible to microbial attack and may represent the most reactive components of organic S pool in these grassland soils. Sulfonate S exhibited a much lower short-term reactivity. The incorporation of sugarcane residue resulted in an increase in organosulfur compounds directly bonded to C at the early stage of incubation. However, similar to soils incubated without residue addition, the proportion of organic S directly linked to C continued to decline with increasing duration of aerobic incubation, whereas the proportion of organic S directly bonded to O showed a steady rise.

Anthropogenic and climate influences on biogeochemical dynamics and molecular-level speciation of soil sulfur.

The soil environment is a primary component of the global biogeochemical sulfur (S) cycle, acting as a source and sink of various S species and mediating oxidation state changes. However, ecological significance of the various S forms and the impacts of human intervention and climate on the amount and structural composition of these compounds are still poorly understood. We investigated the long-term influences of anthropogenically mediated transitions from natural to managed ecosystems on molecular-level speciation, biogeochemical dynamics, and the apparent temperature sensitivity of S moieties in temperate, subtropical, and tropical environments with mean annual temperature (MAT) ranging from 5 degrees C to 21 degrees C, using elemental analysis and X-ray absorption near-edge structure (XANES) spectroscopy. Land-use and land-cover changes led to the depletion of total soil S in all three ecoregions over a period of up to 103 years. The largest decline occurred from tropical forest agroecosystems (67% Kakamega and 76% Nandi, Kenya), compared to losses from temperate (36% at Lethbridge, Canada, and 40% at Pendleton, USA) and subtropical (48% at South Africa) grassland agroecosystems. The total S losses correlated significantly with MAT. Anthropogenic interventions profoundly altered the molecular-level composition and resulted in an apparent shift in oxidation states of organic S from native ecosystems composed primarily of S moieties in intermediate and highly reduced oxidation states toward managed agroecosystems dominated by organic S rich in strongly oxidized functionalities. The most prominent change occurred in thiols and sulfides, the proportion of which decreased by 46% (Lethbridge) and 57% (Pendleton) in temperate agroecosystems, by 46% in subtropical agroecosystems, and by 79% (Nandi) and 81% (Kakamega) in tropical agroecosystems. The proportion of organic S directly linked to O increased by 81%, 168%, 40%, 92%, and 85%, respectively. Among the various organic S functionalities, thiols and sulfides seem to have higher apparent temperature sensitivity, and thus these organic S moieties may become prone to losses due to land-use changes, even from the cooler regions of the world if MAT of these regions rise in the future.

Herbicidal activity of glucosinolate degradation products in fermented meadowfoam ( Limnanthes alba ) seed meal.

Meadowfoam ( Limnanthes alba ) is an oilseed crop grown in western Oregon. After extraction of the oil from the seeds, the remaining seed meal contains 2-4% of the glucosinolate glucolimnanthin. This study investigated the effect of fermentation of seed meal on its chemical composition and the effect of the altered composition on downy brome ( Bromus tectorum ) coleoptile emergence. Incubation of enzyme-inactive seed meal with enzyme-active seeds (1% by weight) resulted in complete degradation of glucolimnanthin and formation of 3-methoxybenzyl isothiocyanate in 28% yield. Fermentation in the presence of an aqueous solution of FeSO(4) (10 mM) resulted in the formation of 3-methoxyphenylacetonitrile and 2-(3-methoxyphenyl)ethanethioamide, a novel natural product. The formation of the isothiocyanate, the nitrile, and the thioamide, as a total, correlated with an increase of herbicidal potency of the seed meal (r(2) = 0.96). The results of this study open new possibilities for the refinement of glucosinolate-containing seed meals for use as bioherbicides.

Pratylenchus neglectus Reduces Yield of Winter Wheat in Dryland Cropping Systems.

Wheat (Triticum aestivum) in low-precipitation regions of eastern Oregon and Washington is grown mostly as rainfed biennial winter wheat (10-month growing season) planted into cultivated fallow (14-month crop-free period). There are increasing trends for cultivated fallow to be replaced by chemical fallow and for spring cereals to be planted annually without tillage. Most fields are infested by the root-lesion nematodes Pratylenchus neglectus or P. thornei. A replicated multiyear experiment was conducted to compare cropping systems on soil infested by P. neglectus. Populations became greater with increasing frequency of the host crops mustard, pea, and wheat. Annual winter wheat had the highest P. neglectus populations, the lowest capacity to extract soil water, and a lower grain yield compared with wheat grown biennially or rotated with other crops. Populations of P. neglectus did not differ for cultivated versus chemical fallow. Lowest populations occurred in annual spring barley. Winter wheat yield was inversely correlated with the population of P. neglectus. Measures to monitor and to reduce the population of P. neglectus in Pacific Northwest wheat fields are recommended.

Long-term cropping system effects on carbon sequestration in eastern Oregon.

Soil organic carbon (SOC) has beneficial effects on soil quality and productivity. Cropping systems that maintain and/or improve levels of SOC may lead to sustainable crop production. This study evaluated the effects of long-term cropping systems on C sequestration. Soil samples were taken at 0- to 10-, 10- to 20-, 20- to 30-, and 30- to 40-cm soil depth profiles from grass pasture (GP), conventional tillage (CT) winter wheat (Triticum aestivum L.)-fallow (CTWF), and fertilized and unfertilized plots of continuous winter wheat (WW), spring wheat (SW), and spring barley (Hordeum vulgare L.) (SB) monocultures under CT and no-till (NT). The samples were analyzed for soil organic matter (SOM) and SOC was derived. Ages of experiments ranged from 6 to 73 yr. Compared to 1931 SOC levels (initial year), CTWF reduced SOC by 9 to 12 Mg ha(-1) in the 0- to 30-cm zone. Grass pasture increased SOC by 6 Mg ha(-1) in the 0- to 10-cm zone but decreased SOC by 3 Mg ha(-1) in the 20- to 30-cm zone. Continuous CT monocultures depleted SOC in the top 0- to 10-cm zone and the bottom 20- to 40-cm zone but maintained SOC levels close to 1931 SOC levels in the 10- to 20-cm layer. Continuous NT monocultures accumulated more SOC in the 0- to 10-cm zone than in deeper zones. Total SOC (0- to 40-cm zone) was highest under GP and continuous cropping and lowest under CTWF. Fertilizer increased total SOC only under CTWW and CTSB by 13 and 7 Mg ha(-1) in 13 yr, respectively. Practicing NT for only 6 yr had started to reverse the effect of 73 yr of CTWF. Compared to CTWF, NTWW and NTSW sequestered C at rates of 2.6 and 1.7 Mg ha(-1) yr(-1), respectively, in the 0- to 40-cm zone. This study showed that the potential to sequester C can be enhanced by increasing cropping frequency and eliminating tillage.