Identification of 4-acrylamido-N-(pyridazin-3-yl)benzamide as anti-COVID-19 compound: a DFTB, molecular docking, and molecular dynamics study.

Omicron is one of the variants of COVID-19 and continuing member of a pandemic. There are several types of vaccines that were developed around the globe to fight against the virus. However, the world is suffering to find suitable drug candidates for the virus. The main protease (Mpro) enzyme of the virus is the best target for finding drug molecules because of its involvement in viral infection and protein synthesis. ZINC-15 is a database of 750 million commercially available compounds. We find 125 compounds having two aromatic rings and amide groups for non-covalent interactions with active site amino acids and functional groups with the capability to bind -SH group of C145 of Mpro through covalent bonding by a nucleophilic addition reaction. The lead compound (Z144) was identified using molecular docking. The non-covalent interactions (NCI) calculations show the interactions between amino acids present in the active site of the protein and the lead molecules are attractive in nature. The density functional-based tight-binding (DFTB) study of the lead compound with amino acids in the active site indicates that Q190 and Q193 play a very critical role in stabilization. The Michael addition of the acrylamide group of the lead molecule at ß-position is facile because the low energy lowest unoccupied molecular orbital (LUMO) is concentrated on the group. From molecular dynamics during 100 ns, it has come to light that strong non-covalent interactions are key for the stability of the lead inside the protein and such binding can fold the protein. The free energy for this interaction is -42.72 kcal mol-1 which was obtained from MM-GB/SA calculations.

Exploring the Noncovalent Interactions of the Dinuclear Cu(II) Schiff Base Complex with Bovine Serum Albumin and Cell Viability against the SiHa Cancer Cell Line.

In the present study, a dinuclear bis(µ-acetate) dicopper(II) complex [Cu2L2(µ1.1-CH3COO-)2] has been synthesized from a tridentate NNO Schiff Base ligand L (L = 2,4-dibromo-6-((3-(methylamino)propylimino)methyl)phenol) and characterized by elemental, ultraviolet-visible (UV-vis), Fourier transform infrared (FTIR), 1H NMR, and electrospray ionization-mass spectrometry (ESI-MS) spectroscopic studies. The single-crystal X-ray structure, different noncovalent interactions, Hirshfeld surface analysis, and density functional theory (DFT) studies of the dinuclear complex were determined by crystallographic computational studies. The structural study exposed that the complex consists of the penta-coordinated double µ1.1-acetato-bridged dinuclear units of Cu(II), and it is a centrosymmetric dimer in which the center of inversion lies at the midpoint of two Cu(II) ions. Hirshfeld surface and DFT studies pointed out the probable potentiality of the crystal in prospective binding with the protein. This was experimentally verified by carrying out the binding interaction studies against bovine serum albumin (BSA) protein using various spectroscopic methods. It was observed that the copper(II) complex could strongly bind to BSA and could quench the intrinsic fluorescence of BSA. Further, the studied complex was appraised for cell viability studies against SiHa cancer cells. It is observed that cell viability increases with time, demonstrating the biocompatible nature of the complex.

pH-Tuned Modulation of 1D Chain to 3D Metal-Organic Framework: Synthesis, Structure and Their Useful Application in the Heterogeneous Claisen-Schmidt Reaction.

The role of pH in the formation of metal-organic frameworks (MOFs) has been studied on magnesium-based carboxylate framework systems [Mg(Pdc)(H2 O)3 ]n (1) and [Mg(Pdc)(H2 O)]n (2) (Pdc=pyridine-2,3-dicarboxylate). The investigation reveals the formation of two different compounds of one- or three-dimensions starting from the same reaction mixture that differs only in pH. Isolated compounds have been characterized by IR and elemental analysis; both compounds were also successfully characterized by single-crystal X-ray diffraction. This study shows that the gradual increase in pH helps to construct a higher-dimensional network. Catalytic activity of compounds 1 and 2 was tested for the Claisen-Schmidt reaction. Compound 2 was successfully dehydrated to produce a coordinately unsaturated compound 2 a, which shows higher catalytic activity than 1 or 2 in heterogeneous medium.

Layered transition metal carboxylates: synthesis, structural aspects and observation of multi-step magnetic transition through phase diagram.

Two new layered transition metal carboxylate frameworks, [Co3(L)2(H2O)6]·2H2O () and [Ni3(L)2(H2O)6]·2H2O () (L = tartronate anion or hydroxymalonic acid), have been synthesized and characterized by X-ray single crystal analysis. Both compounds have similar 2D structures. In both compounds there are two types of metal centers where one center is doubly bridged by the alkoxy oxygen atoms through µ2-O bridging to form a 1D infinite chain parallel to the crystallographic b-axis with the corners shared between the metal polyhedra. Magnetic susceptibility measurements revealed the existence of antiferromagnetic short range correlations between Co(Ni) intra-chain metal centers (with exchange constants JCo = -22.6 and JNi = -35.4 K). At low temperatures, long range order is observed in both compounds at Néel temperatures of 11 (for ) and 16 (for ) K, revealing that other exchange interactions, rather than the intra-chain ones, play a role in these systems. Whereas compound has an antiferromagnetic ground state, compound exhibits a ferromagnetic component, probably due to spin canting. Isothermal magnetization data unveiled a rich phase diagram with three metamagnetic phase transitions below 8 K in compound .

Bis(2,2'-bipyridine-κ(2)N,N')bis-(dicyan-amido-κN(1))cadmium.

In the title compound, [Cd(C(2)N(3))(2)(C(10)H(8)N(2))(2)], the Cd(II) ion is coordinated in a distorted octa-hedral environment by four N atoms from two chelating 2,2'-bipyridine ligands and two N atoms from two monodentate dicyanamide ligands. The dihedral angle between the mean planes of the two bipyridine ligands is 87.67 (6)°.

Tetra-aqua-bis-[2-(pyridin-4-yl-κN)pyrimidine-5-carboxyl-ato]zinc.

In the title complex, [Zn(C(10)H(6)N(3)O(2))(2)(H(2)O)(4)], the Zn(II) ion lies on an inversion center and is coordinated in a slightly distorted octa-hedral geometry by two N atoms from two 2-(pyridin-4-yl)pyrimidine-5-carboxyl-ate ligands and four water mol-ecules. In the symmetry-unique part of the mol-ecule, the pyridine and pyrimidine rings form a dihedral angle of 7.0 (1)°. In the crystal, the coordinating water mol-ecules act as donor groups and carboxyl-ate O atoms act as acceptors in O-H⋯O hydrogen bonds, forming a three-dimensional network.

Layered transition metal carboxylates: efficient reusable heterogeneous catalyst for epoxidation of olefins.

Layered metal carboxylates [M(malonato)(H(2)O)(2)](n) (M = Ni(II) and Mn(II)) that have a claylike structure have been synthesized hydrothermally and characterized. The interlayer separation in these layered carboxylates is comparable to that of the intercalation distance of the naturally occurring clay materials or layered double hydroxides (LDHs). In this study, we have demonstrated that, instead of intercalating the metal complex into layers of the clay or LDH, layered transition metal carboxylates, [M(malonato)(H(2)O)(2)](n), as such can be used as a recyclable heterogeneous catalyst in olefin epoxidation reaction. Metal carboxylates [M(malonato)(H(2)O)(2)](n) exhibit excellent catalytic performance in olefin epoxidation reaction.

Cation-dependent nuclearity of the copper-azido moiety: synthesis, structure, and magnetic study.

Mono-, di-, and trinuclear copper-azido moieties have been synthesized by varying the size of the countercations. [Bu4N]+ yielded a [Cu2(N3)6]2- copper-azido moiety in [Bu4N]2[Cu2(mu(1,1)-N3)2(N3)4], 1, and [Pr4N]+ yielded a [Cu3(N3)8]2- moiety in {[Pr4N]2[Cu3(mu(1,1)-N3)4(N3)4]}n, 2, in which symmetry-related [Cu3(N3)8]2- moieties are doubly mu(1,1)-azido bridged to form unprecedented infinite zigzag chains parallel to the crystallographic a-axis. In the case of [Et4N]+, the mononuclear species [Et4N]2[Cu(N3)4], 3, has been formed. All complexes have been characterized structurally by single-crystal X-ray analysis: 1, C32H72N20Cu2, triclinic, space group P, a = 10.671(9) A, b = 12.239(9) A, c = 10.591(5) A, alpha = 110.01(4) degrees , beta = 93.91(5) degrees , gamma = 113.28(5) degrees , V = 1160.0(1) A3; 2, C24H56N26Cu3, monoclinic, space group P2(1)/n, a = 8.811(2) A, b = 37.266(3) A, c = 13.796(1) A, beta = 107.05(1) degrees , V = 4330.8(10) A(3); 3, C16H40N14Cu, tetragonal, space group I4/m, a = b = 10.487(1) A, c = 12.084(2) A, V = 1328.9(3) A3. The variable-temperature magnetic susceptibility measurements showed that although the magnetic interaction in [Bu4N]2[Cu2(mu(1,1)-N3)2(N3)4], 1, is antiferromagnetic (J = -36 cm(-1)), it is ferromagnetic in {[Pr4N]2[Cu3(mu(1,1)-N3)4(N3)4]}n, 2 (J = 7 cm(-1)). As expected, the [Et4N]2[Cu(N3)4] complex, 3, is paramagnetic.