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1.
Plants (Basel) ; 12(19)2023 Oct 09.
Article in English | MEDLINE | ID: mdl-37836252

ABSTRACT

Bitter gourd (Momordica charantia L.) is an important vine crop of the Cucurbitaceae family and is well known for its high nutritional and medicinal values. However, the genetic variation remains largely unknown. Herein, 96 diverse bitter gourd genotypes were undertaken for diversity analysis using 10 quantitative traits, and 82 simple sequence repeat (SSR) markers. Out of 82 SSRs, 33 were polymorphic and the mean polymorphism information content (PIC) value was 0.38. Marker, JY-003 revealed a maximum (0.81) PIC value and, the number of alleles per locus ranged from 2 to 7 (average 3.46). The value of gene diversity showed the presence of a significant level of polymorphism among these genotypes. The unweighted pair group method (UPGMA) cluster analysis grouped the genotypes into two major clusters of which Cluster I comprised mostly small and medium-fruited genotypes of both M. charantia var. charantia and M. charantia var. muricata, whereas Cluster II included mostly long and extra-long fruited genotypes. Furthermore, these genotypes were divided into six distinct groups based on population structure analysis. The diversity analysis based on 10 quantitative traits revealed that earliness and high-yielding ability were exhibited by the predominantly gynoecious line DBGS-21-06 followed by DBGS-48-00. The principal component analysis (PCA) revealed that the first two components exhibited more than 50% of the total genetic variation. The present study deciphered a higher magnitude of agro-morphological and genetic diversity in 96 bitter gourd genotypes. Therefore, trait-specific genotypes identified in this study could be utilized in breeding programmes directed towards the development of improved cultivars and hybrids of bitter gourd.

2.
J Indian Soc Pedod Prev Dent ; 40(2): 146-153, 2022.
Article in English | MEDLINE | ID: mdl-35859406

ABSTRACT

Context: In the mixed dentition period, malocclusion is in dormant stage, any interception should be preceded by a mixed dentition space analysis. Aims: To derive new regression equation in sample subjects (indigenous group) with no intermaxillary tooth size discrepancy (Bolton's ratio) residing in Davangere and to evaluate its accuracy. To assess the difference of tooth dimensions between males and females and difference between right and left of dental arches. Design: Descriptive study. and Methods: One hundred and fifty children (11-15 years) were included and dental casts were made. A digital Vernier caliper was used for the measurement of teeth. Bolton's ratio was calculated. Group A: Casts without Bolton's discrepancy and Group B: Casts with Bolton's discrepancy. Used: The data were analyzed with the SPSS software version 22.0. New regression equations were derived using correlation and regression analysis. Results: No statistically significant difference was recorded between the actual and predicted mesiodistal widths (MDWs) of permanent canine and premolars in maxilla and mandible, with/without Bolton's discrepancy. Males had statistically significant higher mean in maxillary and mandibular canine dimensions than female and no statistically significant difference between right and left side of dental arches was found. Conclusion: New regression equation was formulated for Davangere population, in which actual and predicted widths of permanent canines and premolars were found to be almost similar when established from sample with/without Bolton's discrepancy. In MDWs, the canine showed significant sexual dimorphism and no clinically significant variations were seen in the right and left sides of both the arches.


Subject(s)
Dental Arch , Dentition, Mixed , Cuspid , Female , Humans , Incisor , Male , Odontometry
3.
Chemosphere ; 263: 128185, 2021 Jan.
Article in English | MEDLINE | ID: mdl-33297152

ABSTRACT

With the rapid rate of industrialization, the emission of effluents represents a serious threat to aquatic living organisms and the environment. Semiconductor-mediated photocatalysis has been highlighted as the most attractive technology for the elimination of pollutants. In this connection, bandgap-tuned ultra-small SnO2-nanoparticle-decorated 2D-Bi2WO6 nanoplates were prepared via the hydrothermal method. The tuning of the bandgap was altered by the thermal annealing procedure. Moreover, we investigated the influence of different bandgaps of SnO2 on the anchoring of the 2D-Bi2WO6 nanoplates and studied their photocatalytic activity through the degradation of Rhodamine B under visible light irradiation. The ultra-small SnO2 nanoparticles were highly anchored on the surface of the 2D-Bi2WO6 plates, which resulted in more photon harvesting, improved charge separation, the transfer of photoinduced charge carriers, and the alteration of band positions towards the visible region of light. Furthermore, the anchored SnO2 nanoparticles improved the performance of the photocatalytic activity of 2D-Bi2WO6 nanoplates by more than 2.7 times.


Subject(s)
Environmental Pollutants , Nanoparticles , Catalysis , Light , Semiconductors
4.
Colloids Surf B Biointerfaces ; 192: 111026, 2020 Apr 18.
Article in English | MEDLINE | ID: mdl-32344163

ABSTRACT

A novel ultrasonically driven bio-reduction method was adopted to reduce the palladium chloride into palladium nanoparticles (PdNPs@CA) using coleus amboinicus extract as a green synthetic protocol. XRD confirms the formation of phase pure cubic Pd nanoparticles with the crystallite size range of 40-50 nm. The UV-vis spectrum reveals the formation of Pd nanoparticles by the disappeared peak at 480 nm of PdCl2 solution. The size distribution and surface morphology of prepared Pd nanoparticles showed spherical shaped nanoparticles with less agglomeration. The catalytic reduction behaviour of the Pd suspension is studied by 4-nitro phenol reduction process in 8 min further confirms its high catalytic performance. Synthesized PdNPs@CA were explored in ultrasound promoted Suzuki-Miyaura coupling reaction to determine the catalytic behaviour with ultrasonic frequency of 40 kHz and power of 150 W (Power sonic 410 bath sonicator) and its recycling ability is determined. It was found that aryl halides reacted with aryl boronic acids to obtain biaryl compound with excellent reaction yields in the presence of PdNPs@CA only in 30 min using PEG-400 as a green solvent. PdNPs@CA can be recovered efficiently and reused for 7 cycles without loss of its catalytic property.

5.
Hortic Res ; 6: 55, 2019.
Article in English | MEDLINE | ID: mdl-30937174

ABSTRACT

Members of the genus Juglans are monecious wind-pollinated trees in the family Juglandaceae with highly heterozygous genomes, which greatly complicates genome sequence assembly. The genomes of interspecific hybrids are usually comprised of haploid genomes of parental species. We exploited this attribute of interspecific hybrids to avoid heterozygosity and sequenced an interspecific hybrid Juglans microcarpa × J. regia using a novel combination of single-molecule sequencing and optical genome mapping technologies. The resulting assemblies of both genomes were remarkably complete including chromosome termini and centromere regions. Chromosome termini consisted of arrays of telomeric repeats about 8 kb long and heterochromatic subtelomeric regions about 10 kb long. The centromeres consisted of arrays of a centromere-specific Gypsy retrotransposon and most contained genes, many of them transcribed. Juglans genomes evolved by a whole-genome-duplication dating back to the Cretaceous-Paleogene boundary and consist of two subgenomes, which were fractionated by numerous short gene deletions evenly distributed along the length of the chromosomes. Fractionation was shown to be asymmetric with one subgenome exhibiting greater gene loss than the other. The asymmetry of the process is ongoing and mirrors an asymmetry in gene expression between the subgenomes. Given the importance of J. microcarpa × J. regia hybrids as potential walnut rootstocks, we catalogued disease resistance genes in the parental genomes and studied their chromosomal distribution. We also estimated the molecular clock rates for woody perennials and deployed them in estimating divergence times of Juglans genomes and those of other woody perennials.

6.
Int J Biol Macromol ; 126: 352-358, 2019 Apr 01.
Article in English | MEDLINE | ID: mdl-30572053

ABSTRACT

Currently, metallic nanoparticles possessing versatile heterogeneous catalytic functionality such as in hydrogenation, water splitting, hydrogen production and CO2 reduction for global pollution remediation have been paid great attentions due to their high chemical stability, superior activity and unique electrical and optical properties. However, the gradual degradation of their catalytic activity on multiple usage limits the monometallic nanoparticles to industrial applications. Herein, we fabricated the highly porous fenugreek polysaccharide assisted green synthesis of AuPd nanostructures for heterogeneous catalytic hydrogenation of the industrial usable highly toxic 4-nitrophenol to the medicinally useful 4-aminophenol. The aqueous method developed in the present work is environmentally friendly, simple and low-cost procedure. The fabricated bimetallic porous AuPd nanostructures characterized using SEM, TEM, UV-Vis, XRD, XPS and FTIR analysis. The catalytic activity of the synthesized nanostructures was studied for the heterogeneous hydrogenation of 4-nitrophenol to 4-aminophenol in presence of NaBH4, and the catalytic kinetic for the hydrogenation was analyzed via an UV-Vis spectrometer.


Subject(s)
Gold/chemistry , Metal Nanoparticles/chemistry , Palladium/chemistry , Polysaccharides/chemistry , Trigonella/chemistry , Catalysis , Hydrogenation , Photoelectron Spectroscopy , Polysaccharides/ultrastructure , Porosity , Spectrophotometry, Ultraviolet , Spectroscopy, Fourier Transform Infrared , X-Ray Diffraction
7.
Hortic Res ; 4: 17035, 2017.
Article in English | MEDLINE | ID: mdl-28791127

ABSTRACT

Grapes are one of the most economically and culturally important crops worldwide, and they have been bred for both winemaking and fresh consumption. Here we evaluate patterns of diversity across 33 phenotypes collected over a 17-year period from 580 table and wine grape accessions that belong to one of the world's largest grape gene banks, the grape germplasm collection of the United States Department of Agriculture. We find that phenological events throughout the growing season are correlated, and quantify the marked difference in size between table and wine grapes. By pairing publicly available historical phenotype data with genome-wide polymorphism data, we identify large effect loci controlling traits that have been targeted during domestication and breeding, including hermaphroditism, lighter skin pigmentation and muscat aroma. Breeding for larger berries in table grapes was traditionally concentrated in geographic regions where Islam predominates and alcohol was prohibited, whereas wine grapes retained the ancestral smaller size that is more desirable for winemaking in predominantly Christian regions. We uncover a novel locus with a suggestive association with berry size that harbors a signature of positive selection for larger berries. Our results suggest that religious rules concerning alcohol consumption have had a marked impact on patterns of phenomic and genomic diversity in grapes.

8.
Plant J ; 87(5): 507-32, 2016 09.
Article in English | MEDLINE | ID: mdl-27145194

ABSTRACT

The Persian walnut (Juglans regia L.), a diploid species native to the mountainous regions of Central Asia, is the major walnut species cultivated for nut production and is one of the most widespread tree nut species in the world. The high nutritional value of J. regia nuts is associated with a rich array of polyphenolic compounds, whose complete biosynthetic pathways are still unknown. A J. regia genome sequence was obtained from the cultivar 'Chandler' to discover target genes and additional unknown genes. The 667-Mbp genome was assembled using two different methods (SOAPdenovo2 and MaSuRCA), with an N50 scaffold size of 464 955 bp (based on a genome size of 606 Mbp), 221 640 contigs and a GC content of 37%. Annotation with MAKER-P and other genomic resources yielded 32 498 gene models. Previous studies in walnut relying on tissue-specific methods have only identified a single polyphenol oxidase (PPO) gene (JrPPO1). Enabled by the J. regia genome sequence, a second homolog of PPO (JrPPO2) was discovered. In addition, about 130 genes in the large gallate 1-ß-glucosyltransferase (GGT) superfamily were detected. Specifically, two genes, JrGGT1 and JrGGT2, were significantly homologous to the GGT from Quercus robur (QrGGT), which is involved in the synthesis of 1-O-galloyl-ß-d-glucose, a precursor for the synthesis of hydrolysable tannins. The reference genome for J. regia provides meaningful insight into the complex pathways required for the synthesis of polyphenols. The walnut genome sequence provides important tools and methods to accelerate breeding and to facilitate the genetic dissection of complex traits.


Subject(s)
Genome, Plant/genetics , Juglans/genetics , Plant Proteins/genetics , Polyphenols/metabolism , Catechol Oxidase/metabolism
9.
J Nanosci Nanotechnol ; 15(2): 1101-9, 2015 Feb.
Article in English | MEDLINE | ID: mdl-26353618

ABSTRACT

In the recent years usage of nanomedicine plays a promising strategy in the improvement of medical treatment. The ecofriendly synthesized silver nanoparticles has introduced a new opportunity to increase the efficacy of drug by reducing its side effects. In the present study, we investigated the antioxidant property of Bacopa monniera stabilized silver nanoparticles against aluminum induced toxicity in albino mice. Forty male albino mice were randomly divided into five groups. First group was treated as control, second group received aluminum acetate (5 mg/kg b . w), third group received Bacopa monniera extract (5 mg/kg b . w), fourth group received BmSNPs (5 mg/kg b . w), fifth group received aluminum acetate plus BmSNPs. Exposure to aluminum acetate significantly increased lipid peroxidation levels with a significant decrease in the antioxidant enzymes such as superoxide dismutase, catalase and glutathione peroxidase activities in the brain, liver and kidney of mice. Degenerative changes were also observed in brain, liver and kidney of aluminum treated mice. No significant changes in the oxidative stress were observed in the Bacopa monniera and BmSNPs alone treated mice. Whereas, co-administration of BmSNPs to Al treated mice showed a significant decrease in lipid peroxidation levels with a significant increase of SOD, CAT and GPx indicating the antioxidant potential of nanoparticles and in counteracting Al induced oxidative stress and histological response in male albino mice. These findings clearly implicate that BmSNPs are able to eradicate the oxidative stress and prevent the tissue damage in aluminum exposed mice.


Subject(s)
Bacopa/chemistry , Metal Nanoparticles/administration & dosage , Plant Extracts/administration & dosage , Silver/administration & dosage , Systemic Inflammatory Response Syndrome/drug therapy , Systemic Inflammatory Response Syndrome/immunology , Aluminum , Animals , Diffusion , Drug Stability , Drug Synergism , Excipients/chemistry , Male , Metal Nanoparticles/chemistry , Metal Nanoparticles/ultrastructure , Mice , Organ Specificity/drug effects , Organ Specificity/immunology , Oxidative Stress/drug effects , Oxidative Stress/immunology , Particle Size , Plant Extracts/chemistry , Reactive Oxygen Species/immunology , Silver/chemistry , Systemic Inflammatory Response Syndrome/chemically induced , Tissue Distribution , Treatment Outcome
10.
J Nanosci Nanotechnol ; 15(2): 1280-6, 2015 Feb.
Article in English | MEDLINE | ID: mdl-26353644

ABSTRACT

Exploitation of green chemical procedures for the synthesis of metal nanoparticles by biological process has received great attention in the field of nanotechnology. To demonstrate a biogenic method that involves the reduction of aqueous gold ions by the extract of Piper longum leaves leading to the formation of different morphological gold nanoparticles (AuNPs). The formation of gold nano-structures has been characterized by UV-Vis absorption spectroscopy. The X-ray diffraction (XRD) and selected area electron diffraction (SAED) patterns indicates the AuNPs are highly crystalline nature with the face-centered cubic (111), (200), (220) and (311) facets, respectively. The AuNPs have different sizes and morphologies that are identified by TEM studies. The involvement of water soluble bio-molecules such as carboxylic acids, flavonoids, proteins and terpenoids were identified by Fourier transform infrared (FT-IR) and Raman spectrum. The responsible mechanism of improving acidic nature and the process of encapsulation of gold nanoparticles by Piper longum extract was discussed. Additionally, we have demonstrated the modified carbon paste electrode using gold nanoparticles by means of cyclic voltammetry in a solution of 1 M KCI and 1 mM [Fe(CN)6]3-/4-. The analysis of cyclic voltammetry shows electronic transmission rate between modified Au-CPE and Bare-CPE electrode increased.


Subject(s)
Gold/chemistry , Green Chemistry Technology/methods , Metal Nanoparticles/chemistry , Metal Nanoparticles/ultrastructure , Piper/chemistry , Plant Extracts/chemistry , Biological Products/chemical synthesis , Biomimetic Materials/chemical synthesis , Electric Conductivity , Excipients/chemistry , Materials Testing , Particle Size , Plant Leaves/chemistry , Surface Properties
11.
PLoS One ; 8(11): e78680, 2013.
Article in English | MEDLINE | ID: mdl-24236035

ABSTRACT

Understanding relationships among species is a fundamental goal of evolutionary biology. Single nucleotide polymorphisms (SNPs) identified through next generation sequencing and related technologies enable phylogeny reconstruction by providing unprecedented numbers of characters for analysis. One approach to SNP-based phylogeny reconstruction is to identify SNPs in a subset of individuals, and then to compile SNPs on an array that can be used to genotype additional samples at hundreds or thousands of sites simultaneously. Although powerful and efficient, this method is subject to ascertainment bias because applying variation discovered in a representative subset to a larger sample favors identification of SNPs with high minor allele frequencies and introduces bias against rare alleles. Here, we demonstrate that the use of hybridization intensity data, rather than genotype calls, reduces the effects of ascertainment bias. Whereas traditional SNP calls assess known variants based on diversity housed in the discovery panel, hybridization intensity data survey variation in the broader sample pool, regardless of whether those variants are present in the initial SNP discovery process. We apply SNP genotype and hybridization intensity data derived from the Vitis9kSNP array developed for grape to show the effects of ascertainment bias and to reconstruct evolutionary relationships among Vitis species. We demonstrate that phylogenies constructed using hybridization intensities suffer less from the distorting effects of ascertainment bias, and are thus more accurate than phylogenies based on genotype calls. Moreover, we reconstruct the phylogeny of the genus Vitis using hybridization data, show that North American subgenus Vitis species are monophyletic, and resolve several previously poorly known relationships among North American species. This study builds on earlier work that applied the Vitis9kSNP array to evolutionary questions within Vitis vinifera and has general implications for addressing ascertainment bias in array-enabled phylogeny reconstruction.


Subject(s)
Genotyping Techniques , Hybridization, Genetic , Polymorphism, Single Nucleotide , Vitis/genetics , Evolution, Molecular , Gene Frequency , Genetic Markers , Genome, Plant , Genotype , Models, Genetic , Phylogeny , Plant Leaves/genetics , Principal Component Analysis , Sequence Analysis, DNA
12.
PLoS One ; 8(11): e80791, 2013.
Article in English | MEDLINE | ID: mdl-24244717

ABSTRACT

The genus Vitis (the grapevine) is a group of highly diverse, diploid woody perennial vines consisting of approximately 60 species from across the northern hemisphere. It is the world's most valuable horticultural crop with ~8 million hectares planted, most of which is processed into wine. To gain insights into the use of wild Vitis species during the past century of interspecific grape breeding and to provide a foundation for marker-assisted breeding programmes, we present a principal components analysis (PCA) based ancestry estimation method to calculate admixture proportions of hybrid grapes in the United States Department of Agriculture grape germplasm collection using genome-wide polymorphism data. We find that grape breeders have backcrossed to both the domesticated V. vinifera and wild Vitis species and that reasonably accurate genome-wide ancestry estimation can be performed on interspecific Vitis hybrids using a panel of fewer than 50 ancestry informative markers (AIMs). We compare measures of ancestry informativeness used in selecting SNP panels for two-way admixture estimation, and verify the accuracy of our method on simulated populations of admixed offspring. Our method of ancestry deconvolution provides a first step towards selection at the seed or seedling stage for desirable admixture profiles, which will facilitate marker-assisted breeding that aims to introgress traits from wild Vitis species while retaining the desirable characteristics of elite V. vinifera cultivars.


Subject(s)
Genome, Plant/genetics , Vitis/genetics , Principal Component Analysis , Vitis/classification
13.
J Indian Soc Pedod Prev Dent ; 31(2): 121-5, 2013.
Article in English | MEDLINE | ID: mdl-23886725

ABSTRACT

Pigmented lesions are commonly found in the oral cavity. Oral pigmentations may be physiological or pathological in nature. It may represent as a localized anomaly of limited significance or the presentation of potentially life threatening multisystem disease. Oral pigmentation has a multifactorial etiology. Most of the oral pigmentations are physiologic. Evaluation of a patient with pigmented lesions should include a full medical and dental history, extraoral and intraoral examinations. In this article, we report a case of extensive physiologic pigmentation of the oral cavity in a 12 year old female patient, posing a diagnostic challenge.


Subject(s)
Melanins/metabolism , Mouth Mucosa/anatomy & histology , Pigmentation/physiology , Child , Diagnosis, Differential , Female , Gingiva/anatomy & histology , Humans , Melanosis/diagnosis , Tongue/anatomy & histology
14.
Indian J Pharmacol ; 43(3): 330-5, 2011 May.
Article in English | MEDLINE | ID: mdl-21713042

ABSTRACT

OBJECTIVE: Diabetes mellitus affects every organ in the man including eyes, kidney, heart, and nervous system. Alcohol consumption is a widespread practice. As the effects of chronic alcohol consumption on diabetic state have been little studied, this study was conducted with the objective of evaluating the effect of alcohol in diabetic rats. MATERIALS AND METHODS: For this study, the rats were divided into five groups (n = 6 in each group): normal control (NC), alcohol treatment (At), diabetic control (DC), diabetic plus alcohol treatment (D + At), diabetic plus glibenclamide treatment (D + Gli). Alcohol treatment was given to the diabetic rats for 30 days. During the period the blood glucose levels, and body weight changes were observed at regular intervals. The antioxidant enzymes like superoxide dismutase (SOD), catalase (CAT), and malondialdehyde (MDA) levels were assayed in the liver and kidney tissues. RESULTS: The blood glucose levels were significantly (P < 0.001) elevated and body weight significantly (P < 0.001) decreased in alcohol-treated diabetic rats. SOD and CAT activities were decreased and the MDA level increased significantly (P < 0.001) in alcohol-treated diabetic rats. Histopathological studies showed that alcohol damages the liver and kidney tissues in diabetic rats. CONCLUSION: These finddings concluded that the consumption of alcohol in diabetic rats worsens the condition. So the consumption of alcohol by diabetic subjects may be potentially harmful.

15.
Article in English | MEDLINE | ID: mdl-21636316

ABSTRACT

Single crystals of γ-glycine, an organic nonlinear optical material have been synthesized in the presence of potassium fluoride (KF) by slow evaporation technique at ambient temperature. The size of the grown crystal is up to the dimension of 12 mm×10 mm×8 mm. The γ-phase was confirmed by single crystal X-ray diffraction, powder XRD and the FTIR analysis. Optical absorption spectrum reveals that the grown crystal has good optical transparency in the entire visible region with an energy band gap of 5.09 eV, which is an essential requirement for a nonlinear optical crystal. Thermal stability of the grown γ-glycine crystal was determined using the thermo gravimetric and differential thermal analyses. The NLO activity of γ-glycine was confirmed by the Kurtz powder technique using Nd:YAG laser and the grown crystal exhibits high relative conversion efficiency when compared to potassium dihydrogen phosphate (KDP).


Subject(s)
Fluorides/chemistry , Glycine/chemistry , Optics and Photonics , Photons , Potassium Compounds/chemistry , Crystallization , Crystallography, X-Ray , Differential Thermal Analysis , Spectrophotometry, Ultraviolet , Spectroscopy, Fourier Transform Infrared , X-Ray Diffraction
16.
Proc Natl Acad Sci U S A ; 108(9): 3530-5, 2011 Mar 01.
Article in English | MEDLINE | ID: mdl-21245334

ABSTRACT

The grape is one of the earliest domesticated fruit crops and, since antiquity, it has been widely cultivated and prized for its fruit and wine. Here, we characterize genome-wide patterns of genetic variation in over 1,000 samples of the domesticated grape, Vitis vinifera subsp. vinifera, and its wild relative, V. vinifera subsp. sylvestris from the US Department of Agriculture grape germplasm collection. We find support for a Near East origin of vinifera and present evidence of introgression from local sylvestris as the grape moved into Europe. High levels of genetic diversity and rapid linkage disequilibrium (LD) decay have been maintained in vinifera, which is consistent with a weak domestication bottleneck followed by thousands of years of widespread vegetative propagation. The considerable genetic diversity within vinifera, however, is contained within a complex network of close pedigree relationships that has been generated by crosses among elite cultivars. We show that first-degree relationships are rare between wine and table grapes and among grapes from geographically distant regions. Our results suggest that although substantial genetic diversity has been maintained in the grape subsequent to domestication, there has been a limited exploration of this diversity. We propose that the adoption of vegetative propagation was a double-edged sword: Although it provided a benefit by ensuring true breeding cultivars, it also discouraged the generation of unique cultivars through crosses. The grape currently faces severe pathogen pressures, and the long-term sustainability of the grape and wine industries will rely on the exploitation of the grape's tremendous natural genetic diversity.


Subject(s)
Crops, Agricultural/genetics , Crops, Agricultural/history , Vitis/genetics , Clone Cells , Haplotypes/genetics , History, Ancient , Linkage Disequilibrium/genetics , Pedigree , Phylogeny , Population Dynamics , Principal Component Analysis , Seeds/genetics , United States , United States Department of Agriculture
17.
Alcohol ; 44(6): 523-9, 2010 Sep.
Article in English | MEDLINE | ID: mdl-20705416

ABSTRACT

Chronic alcohol consumption causes severe hepatic oxidative damage, particularly to old subjects by decreasing various antioxidant enzymes. In this study, we test the hypothesis that exercise training can protect the aging liver against alcohol-induced oxidative damage. Two different age groups of Wistar albino rats (3 months young, n=24; 18 months old, n=24) were evenly divided into four groups: control (Con), exercise trained (Tr, 23 m/min 30 min/day, 5 days/week for 2 months), ethanol drinking/treated (Et, 2.0 g/kg b.w. orally), and exercise training plus ethanol drinking/treated (Tr+Et). We found significantly (P<.001) lowered hepatic antioxidant enzymes including superoxide dismutase, catalase, selenium (Se)-dependent glutathione peroxidase (Se-GSH-Px), Se-non-dependent glutathione peroxidase (non-Se-GSH-Px), glutathione reductase, and glutathione S-transferase activities in aged rats compared with young. Age-related decrease in antioxidant enzyme status was further exacerbated with ethanol drinking, which indicates liver in aged rats is more susceptible to oxidative damage because of decreased free radical scavenging system in aged/old ethanol-drinking rats. However, the decrease in liver antioxidant enzymes status with ethanol consumption was ameliorated by 2 months exercise training in old and young rats. These results demonstrate that age-associated decrease in hepatic free radical scavenging system exacerbated by ethanol drinking. For the first time, we found that this deterioration was significantly reversed by exercise training in aging liver, thus protects against alcohol-induced oxidative damage.


Subject(s)
Aging , Antioxidants , Ethanol/adverse effects , Liver Diseases, Alcoholic/prevention & control , Liver/enzymology , Physical Conditioning, Animal , Animals , Catalase/analysis , Ethanol/administration & dosage , Glutathione Peroxidase/analysis , Glutathione Reductase/analysis , Glutathione Transferase/analysis , Male , Oxidative Stress , Rats , Rats, Wistar , Superoxide Dismutase/analysis
18.
Indian J Exp Biol ; 48(2): 143-9, 2010 Feb.
Article in English | MEDLINE | ID: mdl-20455323

ABSTRACT

Superoxide dismutase, ascorbic acid, glutathione and uric acid levels were decreased and xanthine oxidase, glutathione-s-transferase activities were increased in alcohol treated (2 g/kg body weight, once daily for 30 days) group. However, treatment with ethanolic extract of ginger (100 mg/kg, 200 mg/kg body weight, po, once daily for 30 days) these parameters came to normalcy showing the antioxidant effect of ginger. The antioxidant compounds of ginger may modulate the oxidative stress parameters. The biochemical findings were supplemented by histopathological examination of the kidney. Severe congestion and degenerative changes in tubules in alcohol treated rats were restored by ginger extract treatment. The results confirm the renal protective effect of ginger in alcohol treated rats.


Subject(s)
Ethanol/pharmacology , Kidney/drug effects , Kidney/pathology , Plant Extracts/pharmacology , Zingiber officinale/chemistry , Animals , Ethanol/toxicity , Glutathione/metabolism , Glutathione Transferase/metabolism , Humans , Kidney/metabolism , Male , Rats , Rats, Wistar , Reactive Oxygen Species/metabolism , Superoxide Dismutase/metabolism , Xanthine Oxidase/metabolism
19.
Genetica ; 138(6): 681-94, 2010 Jun.
Article in English | MEDLINE | ID: mdl-20217187

ABSTRACT

One hundred ninety-four germplasm accessions of fig representing the four fig types, Common, Smyrna, San Pedro, and Caprifig were analyzed for genetic diversity, structure, and differentiation using genetic polymorphism at 15 microsatellite loci. The collection showed considerable polymorphism with observed number of alleles per locus ranging from four for five different loci, MFC4, LMFC14, LMFC22, LMFC31 and LMFC35 to nine for LMFC30 with an average of 4.9 alleles per locus. Seven of the 15 loci included in the genetic structure analyses exhibited significant deviation from panmixia, of which two showed excess and five showed deficiency of heterozygote. The cluster analysis (CA) revealed ten groups with 32 instances of synonymy among cultivars and groups differed significantly for frequency and composition of alleles for different loci. The principal components analysis (PCA) confirmed the results of CA with some groups more differentiated than the others. Further, the model based Bayesian approach clustering suggested a subtle population structure with mixed ancestry for most figs. The gene diversity analysis indicated that much of the total variation is found within groups (H (G) /H (T) = 0.853; 85.3%) and the among groups within total component (G (GT) = 0.147) accounted for the remaining 14.7%, of which approximately 64% accounted for among groups within clusters (G (GC) = 0.094) and approximately 36% among clusters (G (CT) = 0.053). The analysis of molecular variance (AMOVA) showed approximately similar results with nearly 87% of variation within groups and approximately 10% among groups within clusters, and approximately 3% among clusters. Overall, the gene pool of cultivated fig analyzed possesses substantial genetic polymorphism but exhibits narrow differentiation. It is evident that fig accessions from Turkmenistan are somewhat genetically different from the rest of the Mediterranean and the Caucasus figs. The long history of domestication and cultivation with widespread dispersal of cultivars with many synonyms has resulted in a great deal of confusion in the identification and classification of cultivars in fig.


Subject(s)
Ficus/genetics , Genetic Variation , Alleles , Ficus/classification , Genes, Plant , Microsatellite Repeats , Phylogeny , Population Dynamics
20.
Chin J Physiol ; 53(1): 62-71, 2010 Feb 28.
Article in English | MEDLINE | ID: mdl-21789886

ABSTRACT

The main goal of this study was to investigate the long-term effect of daily 8-hour mild intermittent hypoxia (14-15% O2) on glucose tolerance and muscle morphology of Sprague-Dawley rats. The involvement of AMPK-PGC-1alpha-VEGF signaling pathways in the skeletal muscle was also determined during the first 8 hours of hypoxia. We found that mRNA levels of VEGF and PGC-1alpha were significantly increased above control after 8-h mild hypoxia without a change in AMPK phosphorylation. After 8 weeks of mild intermittent hypoxia treatment, plasma glucose and insulin levels in oral glucose tolerance test (OGTT), epididymal fat mass, and body weight were significantly lower compared to the control group. While soleus muscle weight was not changed, capillary and fiber densities in the hypoxia group were 33% and 35% above the control suggesting reorganization of muscle fibers. In conclusion, our data provide strong evidence that long-term mild intermittent hypoxia decreases the diffusion distance of glucose and insulin across muscle fibers, and decreases adiposity in rats. These changes may account for the improved glucose tolerance observed following the 8-week hypoxia treatment, and provides grounds for investigating the development of a mild non-pharmacological intervention in the treatment of obesity and type 2 diabetes.


Subject(s)
Glucose Intolerance/metabolism , Hypoxia/metabolism , Muscle, Skeletal/anatomy & histology , Muscle, Skeletal/metabolism , Protein Kinases/metabolism , RNA-Binding Proteins/metabolism , Signal Transduction/physiology , Transcription Factors/metabolism , AMP-Activated Protein Kinase Kinases , Adiposity/physiology , Animals , Blood Glucose/metabolism , Body Weight/physiology , Glucose Tolerance Test , Glucose Transporter Type 4/metabolism , Insulin/blood , Male , Models, Animal , Muscle, Skeletal/cytology , Peroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alpha , RNA, Messenger/metabolism , Rats , Rats, Sprague-Dawley , Vascular Endothelial Growth Factor A/metabolism
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