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1.
bioRxiv ; 2023 Aug 03.
Article in English | MEDLINE | ID: mdl-37577538

ABSTRACT

The development of targeted therapy for patients with Multiple Myeloma (MM) is hampered by the low frequency of actionable genetic abnormalities. Gain or amplification of chr1q (Amp1q) is the most frequent arm-level copy number gain in patients with MM, and it is associated with higher risk of progression and death despite recent advances in therapeutics. Thus, developing targeted therapy for patients with MM and Amp1q stands to benefit a large portion of patients in need of more effective management. Here, we employed large-scale dependency screens and drug screens to systematically characterize the therapeutic vulnerabilities of MM with Amp1q and showed increased sensitivity to the combination of MCL1 and PI3K inhibitors. Using single-cell RNA sequencing, we compared subclones with and without Amp1q within the same patient tumors and showed that Amp1q is associated with higher levels of MCL1 and the PI3K pathway. Furthermore, by isolating isogenic clones with different copy number for part of the chr1q arm, we showed increased sensitivity to MCL1 and PI3K inhibitors with arm-level gain. Lastly, we demonstrated synergy between MCL1 and PI3K inhibitors and dissected their mechanism of action in MM with Amp1q.

2.
Eur Heart J Open ; 3(3): oead037, 2023 May.
Article in English | MEDLINE | ID: mdl-37143610

ABSTRACT

Aims: In patients with non-valvular atrial fibrillation (NVAF) prescribed warfarin, the association between guideline defined international normalised ratio (INR) control and adverse outcomes in unknown. We aimed to (i) determine stroke and systemic embolism (SSE) and bleeding events in NVAF patients prescribed warfarin; and (ii) estimate the increased risk of these adverse events associated with poor INR control in this population. Methods and results: Individual-level population-scale linked patient data were used to investigate the association between INR control and both SSE and bleeding events using (i) the National Institute for Health and Care Excellence (NICE) criteria of poor INR control [time in therapeutic range (TTR) <65%, two INRs <1.5 or two INRs >5 in a 6-month period or any INR >8]. A total of 35 891 patients were included for SSE and 35 035 for bleeding outcome analyses. Mean CHA2DS2-VASc score was 3.5 (SD = 1.7), and the mean follow up was 4.3 years for both analyses. Mean TTR was 71.9%, with 34% of time spent in poor INR control according to NICE criteria.SSE and bleeding event rates (per 100 patient years) were 1.01 (95%CI 0.95-1.08) and 3.4 (95%CI 3.3-3.5), respectively, during adequate INR control, rising to 1.82 (95%CI 1.70-1.94) and 4.8 (95% CI 4.6-5.0) during poor INR control.Poor INR control was independently associated with increased risk of both SSE [HR = 1.69 (95%CI = 1.54-1.86), P < 0.001] and bleeding [HR = 1.40 (95%CI 1.33-1.48), P < 0.001] in Cox-multivariable models. Conclusion: Guideline-defined poor INR control is associated with significantly higher SSE and bleeding event rates, independent of recognised risk factors for stroke or bleeding.

3.
Cancer Cell ; 40(11): 1358-1373.e8, 2022 11 14.
Article in English | MEDLINE | ID: mdl-36379208

ABSTRACT

Patients with smoldering multiple myeloma (SMM) are observed until progression, but early treatment may improve outcomes. We conducted a phase II trial of elotuzumab, lenalidomide, and dexamethasone (EloLenDex) in patients with high-risk SMM and performed single-cell RNA and T cell receptor (TCR) sequencing on 149 bone marrow (BM) and peripheral blood (PB) samples from patients and healthy donors (HDs). We find that early treatment with EloLenDex is safe and effective and provide a comprehensive characterization of alterations in immune cell composition and TCR repertoire diversity in patients. We show that the similarity of a patient's immune cell composition to that of HDs may have prognostic relevance at diagnosis and after treatment and that the abundance of granzyme K (GZMK)+ CD8+ effector memory T (TEM) cells may be associated with treatment response. Last, we uncover similarities between immune alterations observed in the BM and PB, suggesting that PB-based immune profiling may have diagnostic and prognostic utility.


Subject(s)
Multiple Myeloma , Smoldering Multiple Myeloma , Humans , Biomarkers , Disease Progression , Immunologic Factors , Immunotherapy , Lenalidomide/adverse effects , Multiple Myeloma/drug therapy , Smoldering Multiple Myeloma/therapy , Clinical Trials, Phase II as Topic
4.
STAR Protoc ; 3(1): 101163, 2022 03 18.
Article in English | MEDLINE | ID: mdl-35243367

ABSTRACT

This protocol details a staining technique optimized for immunophenotyping of human bone marrow immune populations using mass cytometry. The protocol accounts for the limitations of working with human bone marrow, such as reduced viability, low cell counts, and fragile cell pellets, to successfully acquire single viable cells ready for downstream analysis. This assay can be used to characterize the activation, exhaustion, and cytotoxicity of immune populations and ensure comprehensive immunophenotyping of human bone marrow clinical samples.


Subject(s)
Bone Marrow Cells , Bone Marrow , Flow Cytometry/methods , Humans , Immunophenotyping , Staining and Labeling
5.
Am J Orthod Dentofacial Orthop ; 126(1): 110-2, 2004 Jul.
Article in English | MEDLINE | ID: mdl-15224067

ABSTRACT

This in vitro study compared the force-deflection behavior of 6 superelastic nickel-titanium orthodontic archwires (0.016 x 0.022 in) under controlled moment and temperature. To simulate leveling, maxillary canine brackets and first molar tubes were bonded in such a manner as to remove the tip and angulation from the system. The wires (n = 10) were passively self-ligated into stainless steel brackets attached to an acrylic jig to simulate the maxillary arch. A testing machine recorded deactivations of 3 distances (5, 4, and 3 mm) at 37 degrees C in the canine position. Force-deflection measurements were recorded from the deactivations only. Forces produced during deactivation, at deflections of 2.5, 2.0, and 1.5 mm, were compared by analysis of variance. Significant differences (P < 0.0001) in forces were observed among the wires at the various deflections. All wires exhibited superelastic behavior, and rankings were derived according to statistically significant differences for each deflection distance.


Subject(s)
Dental Alloys , Dental Stress Analysis , Nickel , Orthodontic Wires , Titanium , Analysis of Variance , Elasticity , Materials Testing , Models, Anatomic , Orthodontic Appliance Design , Orthodontic Brackets , Pliability , Stress, Mechanical , Temperature
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