Antagonistic potential of endophytic fungal isolates of tomato (Solanum lycopersicum L.) fruits against post-harvest disease-causing pathogens of tomatoes: An in vitro investigation.

Post-harvest decay of fresh agricultural produce is a major threat to food security globally. Synthetic fungicides, commonly used in practice for managing the post-harvest losses, have negative impacts on consumers' health. Studies have reported the effectiveness of fungal isolates from plants as biocontrol agents of post-harvest diseases, although this is still poorly established in tomatoes (Solanum lycopersicum L. cv. Jasmine). In this study, 800 endophytic fungi were isolated from mature green and ripe untreated and fungicide-treated tomato fruits grown in open soil and hydroponics systems. Of these, five isolates (Aureobasidium pullulans SUG4.1, Coprinellus micaceus SUG4.3, Epicoccum nigrum SGT8.6, Fusarium oxysporum HTR8.4, Preussia africana SUG3.1) showed antagonistic properties against selected post-harvest pathogens of tomatoes (Alternaria alternata, Fusarium solani, Fusarium oxysporum, Geotrichum candidum, Rhizopus stolonifera, Rhizoctonia solani), with Lactiplantibacillus plantarum as a positive control. P. africana SUG3.1 and C. micaceus SUG4.3 significantly inhibited growth of all the pathogens, with antagonistic capabilities comparable to that exhibited by L. plantarum. Furthermore, the isolates produced an array of enzymes, including among others, amylase, cellulose and protease; and were able to utilize several carbohydrates (glucose, lactose, maltose, mannitol, sucrose). In conclusion, P. africana SUG3.1 and C. micaceus SUG4.3 may complement L. plantarum as biocontrol agents against post-harvest pathogens of tomatoes.

De novo genome assembly of a probiotic Lacticaseibacillus rhamnosus ISO20, isolated from raw milk in South Africa.

Lactic acid bacteria are known to exhibit probiotic properties through various mechanisms including production of antimicrobial substances and bile salts tolerance. Here, we report a draft genome sequence of Lacticaseibacillus rhamnosus ISO20, a lactic acid bacterium isolated from raw goat's milk to provide genomic insight into its strategies as probiotic strain.

Genome assembly of antimicrobial-resistant Escherichia coli HMVC1 isolated from healthy Mogosane village cattle, South Africa.

Here, we present the genome assembly of E. coli strain HMVC1 isolated from rectal fecal samples of healthy cattle in South Africa. The genome size of HMVC1 consisted of 5,043,843 bp, with G + C content of 50.5%. The strain harbors marA, mdtM, acrF, acrD, and other antimicrobial resistance genes.

Draft genome assemblies of 12 Enterobacter hormaechei strains isolated from the North West province of South Africa.

We present draft genome sequences of 12 Enterobacter hormaechei strains from feces isolated from cow rectums in the North West province, South Africa. The genome sizes ranged from 4.43 to 5.02Mb, with G + C contents of 55.5-56%, and contained 16-262 contigs. These data will contribute to our knowledge of the ecology and diversity of this species in South Africa.

Draft Genome Sequence of a Putative Raw Milk-Associated Probiotic Bacterium, Pediococcus acidilactici ISO17.

Pediococcus acidilactici is a beneficial lactic acid bacterium frequently studied for its probiotic potential. Here, we present a 2.32-Mb draft genome sequence of strain ISO17, with a G+C content of 42%. The genome was predicted to harbor 4 rRNA genes, 47 tRNA genes, and 2,297 protein-coding sequences.

De novo Genome Assessment of Serratia marcescens SGT5.3, a Potential Plant Growth-Promoting Bacterium Isolated from the Surface of Capsicum annuum Fruit.

Serratia marcescens SGT5.3, a potential plant growth-promoting strain with a wide range of functions, was isolated from the surface of Capsicum annuum fruit. Here, we report the whole-genome sequence of this bacterium. Gene prediction revealed various functional genes potentially involved in plant growth promotion and development.

Genome Assembly of a Putative Plant Growth-Stimulating Bacterial Sweet Pepper Fruit Isolate, Enterobacter hormaechei SRU4.4.

Here, we report the draft genome sequence of Enterobacter hormaechei SRU4.4. This bacterium (genome size = 4,440,516 bp; coding sequences = 4,100; G+C content = 56%) encodes for genes attributed to plant growth promotion (PGP).

Draft Genome Sequence of Lactiplantibacillus plantarum Strain ISO1, a Potential Probiotic Bacterium Isolated from the Milk of South African Saanen Goats.

Lactiplantibacillus plantarum strain ISO1, a potential probiotic with wide food and biotechnological applications, was isolated from the raw milk of South African Saanen goats. Here, we report the draft genome sequence of this bacterium. Sequencing yielded a 3.23-Mb genome and 2,967 protein-coding sequences.

Epiphytic Bacteria from Sweet Pepper Antagonistic In Vitro to Ralstonia solanacearum BD 261, a Causative Agent of Bacterial Wilt.

Biological control of plant pathogens, particularly using microbial antagonists, is posited as the most effective, environmentally-safe, and sustainable strategy to manage plant diseases. However, the roles of antagonists in controlling bacterial wilt, a disease caused by the most devastating and widely distributed pathogen of sweet peppers (i.e., R. solanacearum), are poorly understood. Here, amplicon sequencing and several microbial function assays were used to depict the identities and the potential antagonistic functions of bacteria isolated from 80 red and green sweet pepper fruit samples, grown under hydroponic and open soil conditions, with some plants, fungicide-treated while others were untreated. Amplicon sequencing revealed the following bacterial strains: Bacillus cereus strain HRT7.7, Enterobacter hormaechei strain SRU4.4, Paenibacillus polymyxa strain SRT9.1, and Serratia marcescens strain SGT5.3, as potential antagonists of R. solanacearum. Optimization studies with different carbon and nitrogen sources revealed that maximum inhibition of the pathogen was produced at 3% (w/v) starch and 2,5% (w/v) tryptone at pH 7 and 30 °C. The mode of action exhibited by the antagonistic isolates includes the production of lytic enzymes (i.e., cellulase and protease enzymes) and siderophores, as well as solubilization of phosphate. Overall, the results demonstrated that the maximum antimicrobial activity of bacterial antagonists could only be achieved under specific environmental conditions (e.g., available carbon and nitrogen sources, pH, and temperature levels), and that bacterial antagonists can also indirectly promote crop growth and development through nutrient cycling and siderophore production.

Bacterial communities associated with the surface of fresh sweet pepper (Capsicum annuum) and their potential as biocontrol.

Fresh produce vegetables are colonized by different bacterial species, some of which are antagonistic to microbes that cause postharvest losses. However, no comprehensive assessment of the diversity and composition of bacteria inhabiting surfaces of fresh pepper plants grown under different conditions has been conducted. In this study, 16S RNA amplicon sequencing was used to reveal bacterial communities inhabiting the surfaces of red and green pepper (fungicides-treated and non-fungicides-treated) grown under hydroponic and open field conditions. Results revealed that pepper fruit surfaces were dominated by bacterial phylum Proteobacteria, Firmicutes, Actinobacteria, and, Bacteroidetes. The majority of the bacterial operation taxonomic units (97% similarity cut-off) were shared between the two habitats, two treatments, and the two pepper types. Phenotypic predictions (at phylum level) detected a high abundance of potentially pathogenic, biofilm-forming, and stress-tolerant bacteria on samples grown on open soils than those from hydroponic systems. Furthermore, bacterial species of genera mostly classified as fungal antagonists including; Acinetobacter, Agrobacterium, and Burkholderia were the most abundant on the surfaces. These results suggest that peppers accommodate substantially different bacterial communities with antagonistic activities on their surfaces, independent of employed agronomic strategies and that the beneficial bacterial strains maybe more important for peppers established on open fields, which seems to be more vulnerable to abiotic and biotic stresses.