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1.
J Infect Chemother ; 19(4): 621-7, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23192735

ABSTRACT

The prevalence and antimicrobial susceptibility of Ureaplasma urealyticum and Mycoplasma hominis collected during 2004-2011 were determined. A total of 9956 individuals was analyzed. Identification was performed by use of the mycoplasma IST-2 kit. Antimicrobial susceptibility against doxycycline, josamycin, ofloxacin, erythromycin, tetracycline, ciprofloxacin, azithromycin, clarithromycin, and pristinamycin was also tested by use of this commercial kit. Our results show a prevalence of 1856 positive patients for genital mycoplasmas (18.6 %). Among positive cultures, 89 and 1.1 % of isolates were Ureaplasma urealyticum and Mycoplasma hominis, respectively. For 9.8 % of isolates both urogenital mycoplasmas were grown. Doxycycline was the most active tetracycline for mycoplasma infections, and this is still the drug of first choice. Among macrolides, josamycin and clarithromycin are the most active agents against ureaplasmas; josamycin is also active against mycoplasmas and is an alternative to tetracyclines and erythromycin for mixed infections, especially for pregnant women and neonates. Fluoroquinolones had low efficacy against urogenital mycoplasmas. For Ureaplasma urealyticum, cross-resistance was found between erythromycin and macrolides (except josamycin) (40-80 %) and between erythromycin and ciprofloxacin (79 %). Antibiotic resistance over the test period did not vary significantly. Because of geographical differences among antibiotic resistance, local in-vitro susceptibility testing is recommended to avoid failure of therapy.


Subject(s)
Anti-Bacterial Agents/pharmacology , Mycoplasma Infections/microbiology , Mycoplasma hominis/isolation & purification , Ureaplasma Infections/microbiology , Adolescent , Adult , Chi-Square Distribution , Drug Resistance, Bacterial , Female , Humans , Incidence , Italy/epidemiology , Microbial Sensitivity Tests , Mycoplasma Infections/epidemiology , Mycoplasma hominis/drug effects , Retrospective Studies , Ureaplasma Infections/epidemiology , Ureaplasma urealyticum/drug effects , Ureaplasma urealyticum/isolation & purification
2.
New Microbiol ; 35(2): 227-31, 2012 Apr.
Article in English | MEDLINE | ID: mdl-22707137

ABSTRACT

Our objective was to explore whether positive human cytomegalovirus (HCMV) DNAemia at baseline impaired CD4+ T-cell increase after 1 year of HAART. A sub-study of a randomized clinical trial in selected patients with <200 cell/mm CD4+ at baseline was conducted. Six out of 30 patients had detectable HCMV DNAemia at baseline, all reaching HCMV suppression at week 52 after HAART (only 1 of them was treated with valgancyclovir). No significant differences were found between patients with detectable or undetectable HCMV DNAemia in terms of CD4+ T-cell increase and HIV RNA response to HAART. Although some data may favor HCVM pre-emptive therapy to decrease immune activation, our results do not indicate that this practice may increase CD4+ T-cell count after HAART. At the same time, HAART proved effective in reducing HCMV DNAemia without the need for a specific therapy.


Subject(s)
AIDS-Related Opportunistic Infections/immunology , Antiretroviral Therapy, Highly Active , Cytomegalovirus Infections/immunology , Cytomegalovirus/isolation & purification , DNA, Viral/blood , HIV Infections/complications , HIV Infections/drug therapy , AIDS-Related Opportunistic Infections/virology , Adult , Anti-HIV Agents/therapeutic use , CD4 Lymphocyte Count , Cytomegalovirus/genetics , Cytomegalovirus Infections/virology , Female , HIV Infections/immunology , HIV Infections/virology , Humans , Male , Middle Aged
3.
J Clin Virol ; 51(4): 264-9, 2011 Aug.
Article in English | MEDLINE | ID: mdl-21621454

ABSTRACT

BACKGROUND: Testing for hepatitis C virus core antigen (HCV Ag) may represent a complementary tool to anti-HCV and HCV-RNA in the diagnosis and monitoring of HCV infection. OBJECTIVE: To evaluate the performance characteristics of the automated Abbott ARCHITECT HCV Ag assay. STUDY DESIGN: Five sites analyzed over 3000 routine serum samples from populations at different risk, comparing HCV Ag results with anti-HCV screening and supplemental assay results and with HCV-RNA. RESULTS: The HCV Ag assay showed a specificity of 100%, a good precision (CV<10%) and excellent dilution linearity (r>0.999). The sensitivity (3 fmol/L) corresponds to 700-1100 IU/mL of HCV-RNA. A non-linear correlation with HCV-RNA was found: r=0.713 vs. Siemens bDNA (523 specimens), r=0.736 vs. Roche Cobas TaqMan (356 specimens) and r=0.870 vs. Abbott Real-Time PCR (273 specimens). HCV Ag quantitation was equally effective on different HCV genoypes (239 for genotype 1/1a/1b/1c, 108 for genotype 2/2a/2c, 86 for genotype 3/3a, 50 for genotype 4/4a/4c/4d). Testing of subjects at high risk for HCV and with potential or actual impairment of the immune system identified 2 cases negative for anti-HCV and positive for HCV Ag on 361 hemodialyzed (0.6%) and 7 cases on 97 (7.2%) among transplant recipients. HCV Ag positivity anticipated anti-HCV seroconversion in all three cases of acute hepatitis C. CONCLUSIONS: HCV Ag may be used as reflex testing on anti-HCV positive individuals to confirm or exclude an active infection, and on subjects with acute hepatitis or belonging to high risk groups.


Subject(s)
Automation/methods , Clinical Laboratory Techniques/methods , Hepatitis C/diagnosis , Viral Core Proteins/blood , Viremia/diagnosis , Virology/methods , Drug Monitoring/methods , Genotype , Hepacivirus/classification , Hepacivirus/genetics , Hepatitis C Antibodies/blood , Humans , Immunoassay/methods , RNA, Viral/blood , RNA, Viral/genetics , Sensitivity and Specificity
4.
New Microbiol ; 34(2): 165-71, 2011 Apr.
Article in English | MEDLINE | ID: mdl-21617828

ABSTRACT

Infection by polyomavirus BK (BKV) is an emerging problem in the clinical management of renal transplant patients because it is responsible for nephropathy and consequently can cause loss of the transplanted organ (BKV associated nephropathy, BKVAN). Aim of this study was to evaluate the use of blood viral load measurement as a screening tool for diagnosis of BKV infection and to identify a threshold value for the management of patients. A total of 75 kidney transplant patients, corresponding to 338 consecutive plasma samples, were analyzed by an automatic system for nucleic acid extraction and quantitative real-time polymerase chain reaction (PCR) for detection of BKV. BKV was detected in 170 samples (26 patients) with a median viral load of 4.1 log10 copies/mL; among these 26 patients, seven (34.7%) were found to have BKVAN on allograft biopsy together with a median viral load of 5 log10 copies/mL. The ROC curve analysis identified a viral load equal to 4.1 log10 copies/mL as the best discriminant cut-off value to predict the disease and to identify patients at risk of developing BKVAN.


Subject(s)
BK Virus/isolation & purification , Diagnostic Techniques and Procedures , Kidney Diseases/diagnosis , Kidney Transplantation/adverse effects , Polymerase Chain Reaction/methods , Polyomavirus Infections/diagnosis , Postoperative Complications/diagnosis , Viral Load , Adult , Aged , BK Virus/genetics , BK Virus/physiology , Female , Humans , Kidney Diseases/etiology , Kidney Diseases/virology , Male , Middle Aged , Polyomavirus Infections/etiology , Polyomavirus Infections/virology , Postoperative Complications/etiology , Postoperative Complications/virology
5.
J Clin Microbiol ; 49(7): 2610-3, 2011 Jul.
Article in English | MEDLINE | ID: mdl-21543577

ABSTRACT

The development of assays for detecting recent HIV infections has become crucial for analyzing trends in infection in different populations, both for surveillance and prevention activities. The anti-HIV avidity index (AI), measured with third-generation immunoassays (which detect anti-HIV antibody), has been shown to be an accurate tool for discriminating recent HIV infections (<6 months) from established infections (≥ 6 months). We compared a third-generation immunoassay (AxSYM HIV 1/2 gO; Abbott Diagnostics) to a fourth-generation immunoassay (Architect HIV Ag/Ab Combo; Abbott Diagnostics; which detects anti-HIV antibody and p24 antigen) in terms of AI performance in distinguishing between recent and established HIV infections. A total of 142 samples from 75 HIV-infected individuals with an estimated date of seroconversion were assayed. The two assays showed the same accuracy in identifying a recent infection (91.5%), using an AI cutoff of 0.80, although Architect HIV Ag/Ab Combo was slightly more sensitive (89.4% versus 84.8%; P > 0.05) and yet less specific (93.4% versus 97.4%; P > 0.05). The correlation between assays was high (r = 0.87). When 20 specimens falling in the gray zone around the cutoff point (0.75 ≤ AI ≤ 0.84) were excluded, the accuracy of AI with Architect HIV Ag/Ab Combo was 94.7%, and the concordance between the two assays was 99.2%. The anti-HIV AI is a serological marker that accurately discriminates recent from established HIV infections. It can be successfully applied on fully automated fourth-generation HIV Ab/Ag immunoassays, which have several advantages, including increased throughput, high reproducibility, no need for specific technical skills, and easy comparability of results obtained in different settings.


Subject(s)
Antibody Affinity , Automation/methods , Clinical Laboratory Techniques/methods , HIV Antibodies/immunology , HIV Infections/diagnosis , HIV Infections/immunology , HIV/immunology , Adult , Female , Humans , Immunoassay/methods , Male , Middle Aged , Sensitivity and Specificity
6.
Eur J Contracept Reprod Health Care ; 16(1): 47-53, 2011 Feb.
Article in English | MEDLINE | ID: mdl-21091298

ABSTRACT

OBJECTIVES: To identify bacterial species present in the lower genital tract of males and to investigate the relationship with semen quality. METHODS: The microscopic analyses and cultures of 696 semen specimens, collected over five years from males investigated for subfertility, were retrospectively assessed. RESULTS: Semen cultures were sterile in 48%; they showed a polymicrobial flora (more than two bacterial species) in 30%, and were positive (>1 × 10(3) colony forming units/ml) in 22% of the cases. Gardnerella vaginalis was the most frequently isolated bacterium, followed by Escherichia coli and Enterococcus sp. Ureaplasma urealyticum was recovered from 13 of 147 samples (9%). Of patients with bacteriospermia 42% had leukospermia (>10(6) leukocytes/ml of semen). Bacteriospermia and leukospermia did not correlate with each other although a positive correlation was found between the presence of leukocytes and G. vaginalis isolation. Semen parameters were correlated with the bacterial species isolated most frequently. In comparison with controls, sperm concentration, motility and morphology were mostly deteriorated in the presence of G. vaginalis and U. urealyticum. CONCLUSIONS: Positive seminal fluid cultures must be interpreted with caution, taking into account both raised colony counts of single isolates and leukocyte concentration in the semen. Thus the common misdiagnosis of genital tract infection, based on the presence of seminal bacteria, and unnecessary treatment with antibiotics may be avoided.


Subject(s)
Genitalia, Male/microbiology , Semen/microbiology , Adult , Bacteria, Aerobic/isolation & purification , Bacteria, Anaerobic/isolation & purification , Bacterial Infections/complications , Bacterial Infections/diagnosis , Cell Culture Techniques , Colony Count, Microbial , Genital Diseases, Male/diagnosis , Genital Diseases, Male/microbiology , Humans , Infertility, Male/etiology , Leukocytes , Male , Prevalence , Retrospective Studies , Semen/immunology , Semen Analysis , Statistics, Nonparametric
7.
PLoS One ; 5(7): e11505, 2010 Jul 09.
Article in English | MEDLINE | ID: mdl-20634893

ABSTRACT

BACKGROUND: Several decision support systems have been developed to interpret HIV-1 drug resistance genotyping results. This study compares the ability of the most commonly used systems (ANRS, Rega, and Stanford's HIVdb) to predict virological outcome at 12, 24, and 48 weeks. METHODOLOGY/PRINCIPAL FINDINGS: Included were 3763 treatment-change episodes (TCEs) for which a HIV-1 genotype was available at the time of changing treatment with at least one follow-up viral load measurement. Genotypic susceptibility scores for the active regimens were calculated using scores defined by each interpretation system. Using logistic regression, we determined the association between the genotypic susceptibility score and proportion of TCEs having an undetectable viral load (<50 copies/ml) at 12 (8-16) weeks (2152 TCEs), 24 (16-32) weeks (2570 TCEs), and 48 (44-52) weeks (1083 TCEs). The Area under the ROC curve was calculated using a 10-fold cross-validation to compare the different interpretation systems regarding the sensitivity and specificity for predicting undetectable viral load. The mean genotypic susceptibility score of the systems was slightly smaller for HIVdb, with 1.92+/-1.17, compared to Rega and ANRS, with 2.22+/-1.09 and 2.23+/-1.05, respectively. However, similar odds ratio's were found for the association between each-unit increase in genotypic susceptibility score and undetectable viral load at week 12; 1.6 [95% confidence interval 1.5-1.7] for HIVdb, 1.7 [1.5-1.8] for ANRS, and 1.7 [1.9-1.6] for Rega. Odds ratio's increased over time, but remained comparable (odds ratio's ranging between 1.9-2.1 at 24 weeks and 1.9-2.2 at 48 weeks). The Area under the curve of the ROC did not differ between the systems at all time points; p = 0.60 at week 12, p = 0.71 at week 24, and p = 0.97 at week 48. CONCLUSIONS/SIGNIFICANCE: Three commonly used HIV drug resistance interpretation systems ANRS, Rega and HIVdb predict virological response at 12, 24, and 48 weeks, after change of treatment to the same extent.


Subject(s)
Anti-HIV Agents/therapeutic use , Drug Resistance, Viral/genetics , HIV Infections/drug therapy , HIV-1/physiology , Adolescent , Adult , Aged , Female , Genotype , HIV Infections/virology , Humans , Logistic Models , Male , Middle Aged , ROC Curve , Viral Load , Young Adult
8.
Intervirology ; 53(6): 417-25, 2010.
Article in English | MEDLINE | ID: mdl-20606464

ABSTRACT

OBJECTIVES: The aim of this study was to determine both human papillomavirus (HPV) prevalence and type distribution in cervical specimens of women with cytological abnormalities and to establish the association with high-grade lesions and cervical neoplasia in order to estimate the impact of an HPV vaccine in this region. METHODS: Four hundred and ninety-three cervical specimens obtained from women undergoing routine cervical screening by liquid-based Pap smear were analyzed by Roche linear array HPV genotyping to identify HPV genotypes. RESULTS: HPV 16 was the genotype detected most frequently, followed by HPV 31, 33 and 52. Multiple infections were frequent (58.5%), but decreased with the increase of cervical severity. We found multiple infections composed by only LR types in 4 women: 3 had a histological diagnosis of cervical intraepithelial neoplasia (CIN) 3 and 1 a diagnosis of cervical cancer. HPV 16 alone was present in 24.6% of CIN 3 lesions and 40% of neoplasia. However, in our region, there are an additional 28% of cases of carcinoma in situ and 40% of cases of invasive cancer due to different HPV types that should be considered for eventual inclusion in second-generation HPV vaccines. CONCLUSIONS: These results highlight the importance of assessing individual types in the management and prediction of outcome of women with abnormal baseline cytology and may contribute to determine the potential efficacy of an HPV vaccine in clinical practice.


Subject(s)
Carcinoma/epidemiology , Carcinoma/virology , Papillomaviridae/classification , Papillomavirus Infections/epidemiology , Papillomavirus Infections/virology , Uterine Cervical Neoplasms/epidemiology , Uterine Cervical Neoplasms/virology , Adult , Aged , Carcinoma/pathology , Cervix Uteri/pathology , DNA, Viral/genetics , Female , Genotype , Humans , Italy/epidemiology , Middle Aged , Papanicolaou Test , Papillomaviridae/genetics , Papillomaviridae/isolation & purification , Papillomavirus Infections/complications , Papillomavirus Infections/pathology , Polymorphism, Genetic , Prevalence , Uterine Cervical Neoplasms/pathology , Vaginal Smears
9.
Diagn Microbiol Infect Dis ; 67(3): 239-45, 2010 Jul.
Article in English | MEDLINE | ID: mdl-20462728

ABSTRACT

The diagnostic value of a real-time polymerase chain reaction (PCR) assay targeting the 5.8S rDNA of Dientamoeba fragilis was investigated as compared with conventional parasitologic methods including cultivation testing 959 fecal samples from 491 patients attending a tertiary-care hospital and suspected of having an intestinal parasitosis. The real-time PCR assay revealed 117 additional D. fragilis-positive samples as compared with conventional methods, showing 100% sensitivity and specificity in our experience. On the whole, D. fragilis infection was detected in 186 samples from 105 patients (21.4%, third in frequency among the diagnosed intestinal parasitoses). The evaluated real-time PCR assay represents an effective tool to obtain both an accurate diagnosis and a reliable epidemiologic picture of dientamoebiasis.


Subject(s)
Dientamoeba/isolation & purification , Dientamoebiasis/diagnosis , Parasitology/methods , Polymerase Chain Reaction/methods , Adolescent , Adult , Aged , Child , Child, Preschool , Dientamoeba/genetics , Dientamoebiasis/parasitology , Feces/parasitology , Female , Humans , Infant , Male , Middle Aged , RNA, Protozoan/genetics , RNA, Ribosomal, 5.8S/genetics , Sensitivity and Specificity , Young Adult
10.
Scand J Infect Dis ; 42(5): 324-32, 2010 May.
Article in English | MEDLINE | ID: mdl-20100118

ABSTRACT

We prospectively analysed the microbiological isolates of all febrile/infectious episodes occurring at our haematology unit during 2 consecutive 18-month periods. Microbiologically documented infections (MDI) and antibiotic resistance were correlated with type and status of haematological disease, neutropenia, levofloxacin prophylaxis, central venous catheter and clinical outcome. Three hundred and ten MDI were observed and 369 pathogens were isolated. Gram-negative bacteria represented 49.3% and Gram-positive bacteria 40.9% of all pathogens. Fungal infections represented only 8.9% of MDI. A significant decrease in Staphylococcus aureus (p < 0.001) and an increase in enterococci, viridans streptococci and Pseudomonas spp. (p = 0.004) were observed during the second period. Four multiresistant (Multi-R) Pseudomonas were isolated, all during the last 12 months. The death rate in MDI was 8.7%, bacteria accounting for 70.4% of them. Enterococci, streptococci and Pseudomonas spp. infections were involved in 44.4% of MDI with an unfavourable outcome. Multi-R pathogens were involved in 4 cases (3 vancomycin-resistant enterococci and 1 Multi-R Pseudomonas), their death rate being 25%. Multivariate analysis showed that an infection due to a mycotic or a Multi-R pathogen was associated with an unfavourable outcome. The recent emergence of enterococci, viridans streptococci and Pseudomonas spp., particularly if Multi-R, is a major concern in haematological patients.


Subject(s)
Anti-Bacterial Agents/therapeutic use , Drug Resistance, Multiple, Bacterial , Enterococcus/isolation & purification , Gram-Positive Bacterial Infections/epidemiology , Pseudomonas Infections/epidemiology , Pseudomonas/isolation & purification , Viridans Streptococci/isolation & purification , Enterococcus/drug effects , Gram-Positive Bacterial Infections/drug therapy , Gram-Positive Bacterial Infections/microbiology , Gram-Positive Bacterial Infections/mortality , Hematologic Neoplasms/complications , Hospitals , Humans , Italy/epidemiology , Mycoses/epidemiology , Mycoses/microbiology , Prospective Studies , Pseudomonas/drug effects , Pseudomonas Infections/drug therapy , Pseudomonas Infections/microbiology , Pseudomonas Infections/mortality , Treatment Outcome , Viridans Streptococci/drug effects
11.
Diagn Microbiol Infect Dis ; 66(3): 261-7, 2010 Mar.
Article in English | MEDLINE | ID: mdl-19903583

ABSTRACT

A real-time polymerase chain reaction (PCR) assay was evaluated in comparison with the combination of conventional methods (microscopic examination and antigen detection assay) during the period 2006 to 2008 on 771 fecal samples belonging to 386 patients to assess its usefulness for an accurate laboratory diagnosis of giardiasis. The real-time PCR assay detected Giardia intestinalis DNA in 195 samples (106 patients), including 26 samples (21 patients) negative by the conventional assays. Among the 21 patients, in 8 cases, giardiasis was previously diagnosed also by conventional methods in additional samples of the same patients, whereas in 13, it would have been undiagnosed if real-time PCR assay was not used. The real-time PCR assay demonstrated a detection limit of 2 cysts per reaction and 100% specificity and sensitivity compared to conventional methods. A genotype analysis targeting the beta-giardin gene allowed to identify 53 samples (23 patients) containing genotype A and 59 samples (45 patients) containing genotype B.


Subject(s)
Bacterial Typing Techniques/methods , Giardia lamblia/genetics , Giardiasis/diagnosis , Giardiasis/parasitology , Polymerase Chain Reaction/methods , Protozoan Proteins/genetics , Adult , Child , Cytoskeletal Proteins/genetics , Feces/parasitology , Giardia lamblia/classification , Giardia lamblia/isolation & purification , Humans , Polymorphism, Restriction Fragment Length , Sensitivity and Specificity
12.
Emerg Infect Dis ; 15(11): 1802-4, 2009 Nov.
Article in English | MEDLINE | ID: mdl-19891869

ABSTRACT

To determine HIV prevalence and place of exposure for illegal migrants in Italy, we tested 3,003 illegal adult migrants for HIV; 29 (0.97%) were HIV positive. Antibody avidity index results (indicators of time of infection) were available for 27 of those persons and showed that 6 (22.2%) presumably acquired their infection after migration.


Subject(s)
HIV Infections/epidemiology , Transients and Migrants , Adolescent , Adult , Africa South of the Sahara/ethnology , Aged , Female , HIV Seropositivity/epidemiology , HIV-1 , Humans , Italy/epidemiology , Male , Middle Aged , Risk Factors , Risk-Taking , Sex Work , Unsafe Sex , Young Adult
13.
Diagn Microbiol Infect Dis ; 64(2): 158-65, 2009 Jun.
Article in English | MEDLINE | ID: mdl-19500527

ABSTRACT

The performance of the NucliSens easyMAG platform for the extraction of nucleic acid from different clinical specimens was compared with a manual procedure. A total of 308 specimens were analyzed: 209 plasma samples collected for virus detection and quantification of cytomegalovirus (CMV) and Epstein-Barr virus (EBV) (n = 70), and 29 for HIV genotyping for drug resistance. Linearity of extraction was tested on dilution series of CMV and EBV; the correlation coefficient (R(2)) for standard curves based on repeated extraction runs was 0.99 for CMV and EBV. Inter- and intrarun variability was in accordance with previous studies, and the correlation between automated and manual extraction was very high. The concordant results were 95.7% for CMV and 100% for EBV. The results of sequence analysis for HIV drug resistance showed a concordance in 24 of 29 specimens. The NucliSens easyMAG is extremely easy to perform, is automated, and resulted in a strong reduction of hands-on time compared with manual protocol.


Subject(s)
DNA, Viral/isolation & purification , Molecular Diagnostic Techniques , RNA, Viral/isolation & purification , Reagent Kits, Diagnostic , Virus Diseases/diagnosis , Virus Diseases/virology , Analysis of Variance , Automation , Cytomegalovirus/isolation & purification , HIV/isolation & purification , Herpesvirus 4, Human/isolation & purification , Humans , Plasma/virology , Reproducibility of Results , Sensitivity and Specificity
14.
Antivir Ther ; 13(4): 601-5, 2008.
Article in English | MEDLINE | ID: mdl-18672539

ABSTRACT

BACKGROUND: Prevalence and factors associated with etravirine (EW) resistance mutations among patients failing on first-generation non-nucleoside reverse transcriptase inhibitors (NNRTI) merit investigation. METHODS: The study comprised an analysis of all sequential patients attending the Institute of Infectious Diseases (Brescia, northern Italy) who performed a genotypic resistance testing (GRT) after > or =3 months of a stable NNRTI-based regimen between 2001 and 2006. Multivariable ordinal logistic regression analysis was performed to assess predictors of ETV resistance mutations. RESULTS: Out of 248 strains, 153 (61.7%) harboured > or =1 ETV resistance mutations. In particular, 88 (35.5%), 53 (21.4%) and 12 (4.8%) harboured one, two and three mutations, respectively. The most frequent mutations were G190A (230%), Y181C (23%) and K101E (14.1%). Use of nevirapine (odds ratio [OR] 2.73; 95% confidence level [CI] 1.62-4.62; P<0.001) and a longer time frame between first HIV RNA >500 copies/ml and GRT (per month, OR 1.05; 95% CI 1.01-1.09; P=0.012) were associated with a greater number of ETV resistance mutations. Conversely, higher CD4+ T-cell counts at nadir (per 100 cells/mm3, OR 0.81; 95% CI 0.67-0.98; P=0.029) and use of lamivudine/emtricitabine (OR 0.57; 95% CI 0.37-0.87; P=0.009) were protective. Accumulation of ETV resistance-associated mutations was demonstrated by sequential GRT in 4/35 patients (all treated with nevirapine). CONCLUSIONS: Mutations associated with ETW resistance were common among patients failing on NNRTI, but prevalence of viral strains harbouring three mutations was low. Use of efavirenz and co-administration of lamivudine reduced the risk of ETW resistance. The continued use of the current NNRTI in a failing regimen may select for additional resistant variants.


Subject(s)
Anti-HIV Agents , Drug Resistance, Viral/genetics , HIV Infections/drug therapy , HIV-1/drug effects , Nevirapine/therapeutic use , Pyridazines/pharmacology , Reverse Transcriptase Inhibitors , Adult , Anti-HIV Agents/pharmacology , Anti-HIV Agents/therapeutic use , CD4 Lymphocyte Count , Female , HIV Infections/epidemiology , HIV Infections/virology , HIV-1/classification , HIV-1/genetics , Humans , Italy/epidemiology , Logistic Models , Male , Microbial Sensitivity Tests/methods , Mutation , Nevirapine/pharmacology , Nitriles , Prevalence , Pyrimidines , RNA, Viral/blood , Reverse Transcriptase Inhibitors/pharmacology , Reverse Transcriptase Inhibitors/therapeutic use , Risk Factors , Treatment Failure
15.
AIDS Patient Care STDS ; 22(6): 489-94, 2008 Jun.
Article in English | MEDLINE | ID: mdl-18582190

ABSTRACT

There is a lack of updated estimates of HIV-2 infection in Italy. Moreover, lack of standardized HIV-2 viral load (VL) and drug resistance tests challenges clinical practice. Among 2941 HIV-positive patients followed in our center (Brescia, Northern Italy), 220 (7.5%) were African at the beginning of the study period. We assessed a population of 151 HIV-Ab positive patients (141 of African origin), presenting for routine blood testing from January 2006 to May 2007. Those found infected with HIV-2 started an appropriate disease management with HIV-2 VL and genotypic drug resistance testing. Sixteen of 151 (10.6%) patients were positive for HIV-2. Of those 16 patients, 14 came from Africa. Among 7 experienced patients, 1 was responding to nelfinavir and 4 to lopinavir/ritonavir-containing regimens. Two patients were failing treatment: 1 patient was switched to a saquinavir/ritonavir-containing regimen and responded. The remaining patient switched to lamivudine + atazanavir + saquinavir + ritonavir did not respond, having had previous experience to multiple ineffective drugs, resulting in a very complex HIV-2 drug-resistance pattern. Accurate screening programs and integration of virological tools must be implemented urgently, given the high prevalence of HIV-2, particularly in immigrant patients.


Subject(s)
Anti-HIV Agents/therapeutic use , HIV Infections/drug therapy , HIV-1 , HIV-2 , Adult , Antiretroviral Therapy, Highly Active , CD4 Lymphocyte Count , Emigrants and Immigrants/statistics & numerical data , Female , HIV Infections/diagnosis , HIV Infections/epidemiology , Humans , Italy/epidemiology , Male , Middle Aged , Prevalence
16.
J Med Virol ; 80(5): 747-53, 2008 May.
Article in English | MEDLINE | ID: mdl-18360912

ABSTRACT

Continuous surveillance of HIV primary resistance mutations is highly important due to their potential clinical impact. All patients naïve to antiretrovirals who had > or =1 genotypic resistance testing at the Institute of Infectious Diseases (Brescia, Northern Italy) between 2001 and 2006 were analyzed. Primary resistance mutations were defined using epidemiological and clinical criteria. Mutations were interpreted using the Stanford University Algorithm. Logistic regression analysis was used to assess possible predictors of primary resistance mutations. Among 569 patients, 11% presented > or =1 mutation. Prevalence of primary resistance mutations to nucleoside reverse-transcriptase inhibitors (NRTI), non-nucleoside reverse-transcriptase inhibitors (NNRTI), and protease inhibitors (PI) was 6.3%, 6%, and 1.6%, respectively. The most frequent mutations to NRTI were substitutions at position 215 (215Y in 3 patients, and 215 revertants in 16), 41L (13), 219Q (12), and 210W (10). Among mutations to NNRTI, 103N was found in 21 patients, while 181C, 188L, and 190A/S in 8, 3, and 4 patients, respectively. Fifty-one patients (9%) had high-to-intermediate resistance to > or =1 antiretroviral drug before starting the treatment. Regarding the new generation drugs, nine patients had intermediate resistance to etravirine, five patients had intermediate resistance to tipranavir, while five, one, and seven patients had low resistance to etravirine, tipranavir, and darunavir. Homosexuals were more likely to harbor a virus with primary resistance mutations (OR:2.68; 95% CI:1.44-5.00; P = 0.002) while non-Italian nationality was protective (OR:0.38; 95% CI:0.17-0.86; P = 0.020). Prevalence of primary resistance mutations suggests that genotypic resistance testing should be performed before starting treatment in naïve patients in Italy, particularly when NNRTI are prescribed.


Subject(s)
Amino Acid Substitution/genetics , Drug Resistance, Viral , HIV Infections/virology , HIV-1/drug effects , HIV-1/genetics , Mutation , Adult , Female , Genes, Viral , Humans , Italy , Male , Middle Aged , RNA, Viral/genetics
17.
Curr HIV Res ; 6(1): 43-8, 2008 Jan.
Article in English | MEDLINE | ID: mdl-18288974

ABSTRACT

(i) To compare early decrease of HIV plasma viral load (pVL) after two standard combinations of highly active antiretroviral therapy (HAART). (ii) To evaluate variations of proviral HIV-DNA load on conditions of sustained pVL undetectability. Two different sub-studies of a multicentre prospective randomized controlled trial which compared two first-line HAART (i.e., zidovudine+lamivudine+lopinavir/ritonavir versus tenofovir+lamivudine+ efavirenz). Only patients enrolled at the coordinating centre (University of Brescia) were included in the two sub-studies. In the first sub-study, we calculated pVL decrease with respect to baseline at any of the following time-points: days 1, 3, 7, 14 and 28. Decreases of the pVL were compared between the two treatment groups. In the second sub-study, we analyzed variation of proviral HIV-DNA load in CD4+ T-cells from baseline to week 52 only in patients who maintained the same treatment regimen and had sustained undetectable pVL. In either studies, linear regression analysis was used to investigate what factors could influence variations of pVL and of proviral HIV-DNA load. (i) 64 patients were studied. A significant decrease of pVL was found from day 3 on, without statistically significant differences between the two study groups. However, after adjusting for possible confounders, tenofovir+lamivudine+efavirenz resulted to be associated with greater pVL decreases. (ii) 45 patients were studied. Mean proviral HIV-DNA load decreased from 1,610 (95%CI: 879-2,341) to 896 (95% CI 499-1,293) copies/10(6) cells (P=0.05). Linear regression analysis showed that the decrease of proviral DNA load during follow-up was independently and inversely correlated with age. Further studies are needed to compare pVL decay between antiretroviral regimens and assess whether proviral HIV-DNA load is a surrogate marker of treatment effectiveness.


Subject(s)
CD4-Positive T-Lymphocytes/virology , DNA, Viral/drug effects , Drug Administration Schedule , HIV Infections/drug therapy , HIV-1/drug effects , Reverse Transcriptase Inhibitors/administration & dosage , Viral Load , Adenine/administration & dosage , Adenine/analogs & derivatives , Adult , Alkynes , Antiretroviral Therapy, Highly Active/methods , Benzoxazines/administration & dosage , Biomarkers , CD4 Lymphocyte Count , Cyclopropanes , DNA, Viral/blood , Female , HIV Infections/virology , Humans , Lamivudine/administration & dosage , Male , Middle Aged , Organophosphonates/administration & dosage , Reverse Transcriptase Inhibitors/classification , Tenofovir , Treatment Outcome
18.
Virus Res ; 132(1-2): 25-32, 2008 Mar.
Article in English | MEDLINE | ID: mdl-18036696

ABSTRACT

We have previously shown that HIV-1 p17 binds to activated peripheral blood mononuclear cells and enhances secretion of pro-inflammatory cytokines, but we were unable to define a ligand on activated cells. In this work we evaluate the hypothesis that HIV-1 p17 may be a heparin/heparan sulfate-binding protein. HIV-1 p17 contains C- and N-terminal sequences with positively charged residues and a consensus cluster for heparin binding. We demonstrated by affinity chromatography that HIV-1 p17 binds strongly to heparin-agarose at physiological pH. Soluble heparins and heparan sulfate but not chondroitin 4-sulfate and dextran sulfate inhibit binding of HIV-1 p17 to heparin solid phase and to activated CD4(+) T cells. Furthermore the inhibition of cell sulfatation by chlorate treatment completely counteracts HIV-1 p17 binding to activated cells. These results indicate for the first time that HIV-1 p17 can be ascribed to the heparin binding protein family and suggest that this interaction might play a key role in the ability of the protein to induce an inflammatory effect on activated cells.


Subject(s)
CD4-Positive T-Lymphocytes/metabolism , HIV Antigens/metabolism , Heparan Sulfate Proteoglycans/metabolism , Lymphocyte Activation , gag Gene Products, Human Immunodeficiency Virus/metabolism , CD4-Positive T-Lymphocytes/cytology , CD4-Positive T-Lymphocytes/drug effects , CD4-Positive T-Lymphocytes/immunology , Chlorates/pharmacology , Chromatography, Affinity , Enzyme-Linked Immunosorbent Assay , Glycosaminoglycans/metabolism , HIV Antigens/immunology , Heparan Sulfate Proteoglycans/immunology , Heparin/analysis , Heparin/pharmacology , Humans , Microscopy, Confocal , Protein Binding/drug effects , gag Gene Products, Human Immunodeficiency Virus/immunology
19.
BMC Infect Dis ; 7: 138, 2007 Nov 23.
Article in English | MEDLINE | ID: mdl-18036216

ABSTRACT

BACKGROUND: Quantitative real-time PCR assays, which are more rapid and practical than pp65 antigenemia determination, are progressively becoming the preferred method for monitoring Human Cytomegalovirus (HCMV) reactivation. However, the relationship between HCMV DNA and antigenemia levels is still under investigation. The aim of this study was to analyse the relationship between HCMV DNA and pp65 antigenemia levels in order to identify clinically useful threshold values for the management of patients. METHODS: 475 consecutive samples from 156 immunosuppressed patients were tested for HCMV by pp65 antigenemia and Real-time PCR assay. RESULTS: 136 out of 475 consecutive samples derived from 48 patients showed evidence of HCMV infection. HCMV DNA was detected in 106 samples, pp65 antigen in 3, and both markers in 27. pp65 antigen detection was associated with higher HCMV DNA levels. The cut-off HCMV DNA level that best predicted pp65 antigenemia in this series of samples was 11,500 copies/ml, but different threshold levels could be observed for specific groups of patients. HCMV disease was observed in 5 out of 48 patients with active HCMV infection. The presence of clinical symptoms was associated with positive pp65 and with higher antigenemia levels. Higher HCMV DNA load at the onset of viral replication was correlated to the development of clinical symptoms. CONCLUSION: Both pp65 antigenemia and HCMV DNA load can be useful for the prospective monitoring of immunocompromised subjects. Specific cut-off levels capable of triggering preemptive antiviral treatment should be determined in accordance to the type of test used and the characteristics of patients and prospectively validated.


Subject(s)
Cytomegalovirus Infections/diagnosis , Cytomegalovirus/isolation & purification , DNA, Viral/blood , Immunocompromised Host , Phosphoproteins/blood , Polymerase Chain Reaction/methods , Viral Matrix Proteins/blood , Adult , Cytomegalovirus/genetics , Cytomegalovirus/immunology , Cytomegalovirus Infections/virology , Female , Humans , Male , Middle Aged , Reproducibility of Results
20.
Med Sci Monit ; 13(6): BR136-44, 2007 Jun.
Article in English | MEDLINE | ID: mdl-17534228

ABSTRACT

BACKGROUND: Urinary tract infections are associated with substantial morbidity and recurrent infections. Antibiotic therapy is generally initiated empirically because early treatment decreases the rate of morbidity resulting from UTI. Unfortunately, antibiotic resistance has become an increasingly pressing problem in many countries. In this study, the resistance patterns of urinary isolates to commonly used antimicrobials were determined in order to evaluate the options for empirical antibiotic therapy of UTI in out- and in- patients. MATERIAL/METHODS: A retrospective study was carried out on urine samples examined in this laboratory in 2002-2005. The isolates were divided into the following three groups: isolates from hospital inpatients, isolates from community outpatients, and isolates from catheterized patients. RESULTS: Escherichia coli was the most common etiologic agent isolated, followed by Enterococcus faecalis and Klebsiella pneumoniae. Over the four-year period, a decrease in the isolation of Pseudomonas aeruginosa and a parallel increase in Candida spp. in hospitalized patients were observed. Against Gram-positive isolates, enterococci in particular, ampicillin and glycopeptides demonstrated the best, most consistent activity. Among Escherichia coli isolates, nitrofurantoin, cephalosporins, and penicillin/betalactams were the best options for therapeutic treatment because of the presence of a rate of resistance to cotrimoxazole and fluoroquinolones of over 10%, while the most active drug against Pseudomonas aeruginosa was piperacillin/tazobactam. CONCLUSIONS: Region-specific surveillance studies provide additional information about the type of pathogens causing UTIs and their antimicrobial susceptibility patterns. Therefore, these data can serve as a basis to develop national country-specific guidelines for the empirical treatment of UTIs.


Subject(s)
Bacteria/isolation & purification , Drug Resistance, Microbial , Fungi/isolation & purification , Urinary Tract Infections/microbiology , Urine/microbiology , Catheterization/adverse effects , Hospital Departments , Humans , Inpatients , Italy , Outpatients
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