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1.
PNAS Nexus ; 2(7): pgad231, 2023 Jul.
Article in English | MEDLINE | ID: mdl-37497046

ABSTRACT

The cytoskeleton is a major focus of physical studies to understand organization inside cells given its primary role in cell motility, cell division, and cell mechanics. Recently, protein condensation has been shown to be another major intracellular organizational strategy. Here, we report that the microtubule crosslinking proteins, MAP65-1 and PRC1, can form phase separated condensates at physiological salt and temperature without additional crowding agents in vitro. The size of the droplets depends on the concentration of protein. MAP65 condensates are liquid at first and can gelate over time. We show that these condensates can nucleate and grow microtubule bundles that form asters, regardless of the viscoelasticity of the condensate. The droplet size directly controls the number of projections in the microtubule asters, demonstrating that the MAP65 concentration can control the organization of microtubules. When gel-like droplets nucleate and grow asters from a shell of tubulin at the surface, the microtubules are able to re-fluidize the MAP65 condensate, returning the MAP65 molecules to solution. This work implies that there is an interplay between condensate formation from microtubule-associated proteins, microtubule organization, and condensate dissolution that could be important for the dynamics of intracellular organization.

2.
Nat Cell Biol ; 24(7): 1088-1098, 2022 07.
Article in English | MEDLINE | ID: mdl-35725768

ABSTRACT

A long-established strategy for transcription regulation is the tethering of transcription factors to cellular membranes. By contrast, the principal effectors of Hedgehog signalling, the GLI transcription factors, are regulated by microtubules in the primary cilium and the cytoplasm. How GLI is tethered to microtubules remains unclear. Here, we uncover DNA mimicry by the ciliary kinesin KIF7 as a mechanism for the recruitment of GLI to microtubules, wherein the coiled-coil dimerization domain of KIF7, characterized by its striking shape, size and charge similarity to DNA, forms a complex with the DNA-binding zinc fingers in GLI, thus revealing a mode of tethering a DNA-binding protein to the cytoskeleton. GLI increases KIF7 microtubule affinity and consequently modulates the localization of both proteins to microtubules and the cilium tip. Thus, the kinesin-microtubule system is not a passive GLI tether but a regulatable platform tuned by the kinesin-transcription factor interaction. We retooled this coiled-coil-based GLI-KIF7 interaction to inhibit the nuclear and cilium localization of GLI. This strategy can potentially be exploited to downregulate erroneously activated GLI in human cancers.


Subject(s)
Kinesins , Transcription Factors , Hedgehog Proteins/genetics , Hedgehog Proteins/metabolism , Humans , Kinesins/genetics , Microtubules/metabolism , Molecular Mimicry , Transcription Factors/genetics , Transcription Factors/metabolism , Zinc Finger Protein GLI1/genetics
3.
J Vis Exp ; (180)2022 02 18.
Article in English | MEDLINE | ID: mdl-35253794

ABSTRACT

Microtubules are polymers of αß-tubulin heterodimers that organize into distinct structures in cells. Microtubule-based architectures and networks often contain subsets of microtubule arrays that differ in their dynamic properties. For example, in dividing cells, stable bundles of crosslinked microtubules coexist in close proximity to dynamic non-crosslinked microtubules. TIRF-microscopy-based in vitro reconstitution studies enable the simultaneous visualization of the dynamics of these different microtubule arrays. In this assay, an imaging chamber is assembled with surface-immobilized microtubules, which are either present as single filaments or organized into crosslinked bundles. Introduction of tubulin, nucleotides, and protein regulators allows direct visualization of associated proteins and of dynamic properties of single and crosslinked microtubules. Furthermore, changes that occur as dynamic single microtubules organize into bundles can be monitored in real-time. The method described here allows for a systematic evaluation of the activity and localization of individual proteins, as well as synergistic effects of protein regulators on two different microtubule subsets under identical experimental conditions, thereby providing mechanistic insights that are inaccessible by other methods.


Subject(s)
Microscopy , Microtubule-Associated Proteins , Cytoskeleton/metabolism , Microtubule-Associated Proteins/metabolism , Microtubules/metabolism , Tubulin/metabolism
4.
Dev Cell ; 56(14): 2007-2009, 2021 07 26.
Article in English | MEDLINE | ID: mdl-34314694

ABSTRACT

The C-terminal tail of tubulin influences microtubule assembly and stability. In this issue of Developmental Cell, Chen et al. combine in vitro experiments using recombinant tubulin with molecular dynamics simulations to provide molecular-level insights into the importance of α-tubulin tail and its post-translational modifications in microtubule assembly and stability.


Subject(s)
Microtubules , Tubulin , Microtubules/metabolism , Molecular Dynamics Simulation , Protein Processing, Post-Translational , Tubulin/metabolism
5.
Nat Chem Biol ; 17(9): 964-974, 2021 09.
Article in English | MEDLINE | ID: mdl-34083810

ABSTRACT

A remarkable feature of the microtubule cytoskeleton is the coexistence of subpopulations having different dynamic properties. A prominent example is the anaphase spindle, where stable antiparallel bundles exist alongside dynamic microtubules and provide spatial cues for cytokinesis. How are the dynamics of spatially proximal arrays differentially regulated? We reconstitute a minimal system of three midzone proteins: microtubule-crosslinker PRC1 and its interactors CLASP1 and Kif4A, proteins that promote and suppress microtubule elongation, respectively. We find that their collective activity promotes elongation of single microtubules while simultaneously stalling polymerization of crosslinked bundles. This differentiation arises from (1) strong rescue activity of CLASP1, which overcomes the weaker effects of Kif4A on single microtubules, and (2) lower microtubule- and PRC1-binding affinity of CLASP1, which permits the dominance of Kif4A at overlaps. In addition to canonical mechanisms where antagonistic regulators set microtubule length, our findings illuminate design principles by which collective regulator activity creates microenvironments of arrays with distinct dynamic properties.


Subject(s)
Cell Cycle Proteins/metabolism , Kinesins/metabolism , Microtubule-Associated Proteins/metabolism , Microtubules/metabolism , Cell Cycle Proteins/genetics , Cell Cycle Proteins/isolation & purification , Humans , Kinesins/genetics , Kinesins/isolation & purification , Microtubule-Associated Proteins/genetics , Microtubule-Associated Proteins/isolation & purification
6.
Elife ; 102021 06 11.
Article in English | MEDLINE | ID: mdl-34114950

ABSTRACT

The organization of micron-sized, multi-microtubule arrays from individual microtubules is essential for diverse cellular functions. The microtubule polymer is largely viewed as a passive building block during the organization process. An exception is the 'tubulin code' where alterations to tubulin at the amino acid level can influence the activity of microtubule-associated proteins. Recent studies reveal that micron-scale geometrical features of individual microtubules and polymer networks, such as microtubule length, overlap length, contact angle, and lattice defects, can also regulate the activity of microtubule-associated proteins and modulate polymer dynamics. We discuss how the interplay between such geometrical properties of the microtubule lattice and the activity of associated proteins direct multiple aspects of array organization, from microtubule nucleation and coalignment to specification of array dimensions and remodeling of dynamic networks. The mechanisms reviewed here highlight micron-sized features of microtubules as critical parameters to be routinely investigated in the study of microtubule self-organization.


Subject(s)
Microtubules/metabolism , Biological Phenomena , Humans , Interphase , Microtubule-Associated Proteins/metabolism , Microtubules/ultrastructure , Particle Size , Polymers/metabolism , Tubulin/metabolism
7.
Dev Cell ; 49(5): 711-730.e8, 2019 06 03.
Article in English | MEDLINE | ID: mdl-31031197

ABSTRACT

The correct localization of Hedgehog effectors to the tip of primary cilia is critical for proper signal transduction. The conserved non-motile kinesin Kif7 defines a "cilium-tip compartment" by localizing to the distal ends of axonemal microtubules. How Kif7 recognizes microtubule ends remains unknown. We find that Kif7 preferentially binds GTP-tubulin at microtubule ends over GDP-tubulin in the mature microtubule lattice, and ATP hydrolysis by Kif7 enhances this discrimination. Cryo-electron microscopy (cryo-EM) structures suggest that a rotated microtubule footprint and conformational changes in the ATP-binding pocket underlie Kif7's atypical microtubule-binding properties. Finally, Kif7 not only recognizes but also stabilizes a GTP-form of tubulin to promote its own microtubule-end localization. Thus, unlike the characteristic microtubule-regulated ATPase activity of kinesins, Kif7 modulates the tubulin mechanochemical cycle. We propose that the ubiquitous kinesin fold has been repurposed in Kif7 to facilitate organization of a spatially restricted platform for localization of Hedgehog effectors at the cilium tip.


Subject(s)
Cilia/physiology , Guanosine Triphosphate/metabolism , Kinesins/metabolism , Mechanotransduction, Cellular , Microtubules/metabolism , Tubulin/metabolism , Humans , Kinesins/chemistry , Kinesins/genetics , Protein Binding , Protein Conformation , Protein Multimerization , Signal Transduction , Tubulin/genetics
8.
Sci Rep ; 6: 24019, 2016 Apr 07.
Article in English | MEDLINE | ID: mdl-27053150

ABSTRACT

Small heat shock proteins are ubiquitous molecular chaperones that form the first line of defence against the detrimental effects of cellular stress. Under conditions of stress they undergo drastic conformational rearrangements in order to bind to misfolded substrate proteins and prevent cellular protein aggregation. Owing to the dynamic nature of small heat shock protein oligomers, elucidating the structural basis of chaperone action and oligomerization still remains a challenge. In order to understand the organization of sHSP oligomers, we have determined crystal structures of a small heat shock protein from Salmonella typhimurium in a dimeric form and two higher oligomeric forms: an 18-mer and a 24-mer. Though the core dimer structure is conserved in all the forms, structural heterogeneity arises due to variation in the terminal regions.


Subject(s)
Bacterial Proteins/chemistry , Heat-Shock Proteins/chemistry , Protein Conformation , Protein Multimerization , Amino Acid Sequence , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Cryoelectron Microscopy , Crystallography, X-Ray , Heat-Shock Proteins/genetics , Heat-Shock Proteins/metabolism , Models, Molecular , Mutation , Protein Binding , Protein Folding , Protein Subunits/chemistry , Protein Subunits/genetics , Protein Subunits/metabolism , Salmonella typhimurium/genetics , Salmonella typhimurium/metabolism , Sequence Homology, Amino Acid , Solutions/chemistry
9.
Cell Stress Chaperones ; 20(3): 451-60, 2015 May.
Article in English | MEDLINE | ID: mdl-25624002

ABSTRACT

Small heat shock proteins (sHSPs) are a family of ATP-independent molecular chaperones which prevent cellular protein aggregation by binding to misfolded proteins. sHSPs form large oligomers that undergo drastic rearrangement/dissociation in order to execute their chaperone activity in protecting substrates from stress. Substrate-binding sites on sHSPs have been predominantly mapped on their intrinsically disordered N-terminal arms. This region is highly variable in sequence and length across species, and has been implicated in both oligomer formation and in mediating chaperone activity. Here, we present our results on the functional and structural characterization of five sHSPs in rice, each differing in their subcellular localisation, viz., cytoplasm, nucleus, chloroplast, mitochondria and peroxisome. We performed activity assays and dynamic light scattering studies to highlight differences in the chaperone activity and quaternary assembly of sHSPs targeted to various organelles. By cloning constructs that differ in the length and sequence of the tag in the N-terminal region, we have probed the sensitivity of sHSP oligomer assembly and chaperone activity to the length and amino acid composition of the N-terminus. In particular, we have shown that the incorporation of an N-terminal tag has significant consequences on sHSP quaternary structure.


Subject(s)
Heat-Shock Proteins, Small/metabolism , Organelles/metabolism , Oryza/metabolism , Plant Proteins/metabolism , Amino Acid Sequence , Conserved Sequence , Gene Expression , Heat-Shock Proteins, Small/genetics , Molecular Sequence Data , Plant Proteins/genetics , Protein Transport
10.
J Community Health ; 36(5): 728-32, 2011 Oct.
Article in English | MEDLINE | ID: mdl-21298473

ABSTRACT

Social networks are increasingly recognized as important determinants of many chronic diseases, yet little data exist regarding the influence of social networks on diabetes. We surveyed diabetic patients to determine how social networks affect their overall level of concern regarding diabetes and its complications. We adapted a previously published instrument and surveyed 240 diabetic patients at two primary care practices. Patients recorded the number of family and friends who had diabetes and rated their level of concern about diabetes on a scale of 0% (no concern) to 100% (extremely concerned). Our primary outcome variable was patients' level of concern (<75% or ≥75%). We developed logistic regression models to determine the effect of disease burden in patients' social networks on expressed level of concern about diabetes. We received 154 surveys (64% response rate). We found that for each additional family member with diabetes, patients expressed a greater level of concern about diabetes (AOR 1.5; 95% CI 1.2-2.0) and its potential complications (AOR 1.4; 95% CI 1.1-1.7). Similarly, patients with an increased number of friends with diabetes expressed greater concern about diabetes (AOR 1.5; 95% CI 1.2-1.9) and its complications (AOR 1.3; 95% CI 1.1-1.7). Patients with a higher prevalence of diabetes within their social networks expressed greater concern about diabetes and diabetic complications. Determining disease burden within patients' social networks may allow physicians to better understand patients' perspectives on their disease and ultimately help them achieve meaningful behavioral change.


Subject(s)
Attitude to Health , Diabetes Mellitus, Type 2/psychology , Social Support , Adult , Female , Humans , Male , Middle Aged , New York , Primary Health Care , Urban Health
11.
J Gen Intern Med ; 25(7): 663-9, 2010 Jul.
Article in English | MEDLINE | ID: mdl-20306149

ABSTRACT

BACKGROUND: Young adults have a high prevalence of many preventable diseases and frequently lack a usual source of ambulatory care, yet little is known about their use of the emergency department. OBJECTIVE: To characterize care provided to young adults in the emergency department. DESIGN, SETTING, AND PARTICIPANTS: Cross-sectional analysis of visits from young adults age 20 to 29 presenting to emergency departments (N = 17,048) and outpatient departments (N = 14,443) in the National Hospital Ambulatory Medical Care Survey and National Ambulatory Medical Care Survey. MAIN MEASURES: Visits to the emergency department compared to ambulatory offices. RESULTS: Emergency department care accounts for 21.6% of all health care visits from young adults, more than children/adolescents (12.6%; P < 0.001) or patients 30 years and over (8.3%; P < 0.001). Visits from young adults were considerably more likely to occur in the emergency department for both injury-related and non-injury-related reasons compared to children/adolescents (P < 0.001) or older adults (P < 0.001). Visits from black young adults were more likely than whites to occur in the emergency department (36.2% vs.19.2%; P < 0.001) rather than outpatient offices. The proportion of care delivered to black young adults in the emergency department increased between 1996 and 2006 (25.9% to 38.5%; P = 0.001 for trend). In 2006, nearly half (48.5%) of all health care provided to young black men was delivered through emergency departments. The urgency of young adult emergency visits was less than other age groups and few (4.7%) resulted in hospital admission. CONCLUSIONS: A considerable amount of care provided to young adults is delivered through emergency departments. Trends suggest that young adults are increasingly relying on emergency departments for health care, while being seen for less urgent indications.


Subject(s)
Ambulatory Care/statistics & numerical data , Ambulatory Care/trends , Emergency Medical Services/trends , Health Care Surveys/trends , Adult , Age Factors , Cross-Sectional Studies , Female , Humans , Male , Outpatient Clinics, Hospital/statistics & numerical data , Outpatient Clinics, Hospital/trends , United States/epidemiology , Young Adult
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