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1.
Sci Rep ; 10(1): 355, 2020 01 15.
Article in English | MEDLINE | ID: mdl-31942016

ABSTRACT

Breast cancer patients are commonly treated with taxane (e.g. docetaxel) chemotherapy, despite poor outcomes and eventual disease relapse. We previously identified the Bcl-2-associated death promoter (BAD) as a prognostic indicator of good outcome in taxane-treated breast cancer patients. We also demonstrated that BAD expression in human breast carcinoma cells generated larger tumors in mouse xenograft models. These paradoxical results suggest that BAD-expressing tumors are differentially sensitive to taxane treatment. We validated this here and show that docetaxel therapy preferentially reduced growth of BAD-expressing xenograft tumors. We next explored the cellular mechanism whereby BAD sensitizes cells to docetaxel. Taxanes are microtubule inhibiting agents that cause cell cycle arrest in mitosis whereupon the cells either die in mitosis or aberrantly exit (mitotic slippage) and survive as polyploid cells. In response to docetaxel, BAD-expressing cells had lengthened mitotic arrest with a higher proportion of cells undergoing death in mitosis with decreased mitotic slippage. Death in mitosis was non-apoptotic and not dependent on Bcl-XL interaction or caspase activation. Instead, cell death was necroptotic, and dependent on ROS. These results suggest that BAD is prognostic for favourable outcome in response to taxane chemotherapy by enhancing necroptotic cell death and inhibiting the production of potentially chemoresistant polyploid cells.


Subject(s)
Antineoplastic Agents/therapeutic use , Breast Neoplasms/drug therapy , Breast Neoplasms/genetics , Docetaxel/therapeutic use , Genes, bcl-2 , bcl-Associated Death Protein/genetics , Animals , Breast Neoplasms/diagnosis , Breast Neoplasms/pathology , Cell Line, Tumor , Humans , Mice , Mitosis/drug effects , Necroptosis/drug effects , Oxidative Phosphorylation , Prognosis , Promoter Regions, Genetic , Reactive Oxygen Species/metabolism , Xenograft Model Antitumor Assays
2.
Oncogene ; 38(18): 3325-3339, 2019 05.
Article in English | MEDLINE | ID: mdl-30635657

ABSTRACT

The Bcl-2-associated death promoter BAD is a prognostic indicator for good clinical outcome of breast cancer patients; however, whether BAD affects breast cancer biology is unknown. Here we showed that BAD increased cell growth in breast cancer cells through two distinct mechanisms. Phosphorylation of BAD at S118 increased S99 phosphorylation, 14-3-3 binding and AKT activation to promote growth and survival. Through a second, more prominent pathway, BAD stimulated mitochondrial oxygen consumption in a novel manner that was downstream of substrate entry into the mitochondria. BAD stimulated complex I activity that facilitated enhanced cell growth and sensitized cells to apoptosis in response to complex I blockade. We propose that this dependence on oxidative metabolism generated large but nonaggressive cancers. This model identifies a non-canonical role for BAD and reconciles BAD-mediated tumor growth with favorable outcomes in BAD-high breast cancer patients.


Subject(s)
14-3-3 Proteins/metabolism , Breast Neoplasms/metabolism , Breast Neoplasms/pathology , Cell Proliferation/physiology , Mitochondria/metabolism , bcl-Associated Death Protein/metabolism , Animals , Apoptosis/physiology , Cell Line, Tumor , Female , Humans , Mice , Mitochondria/pathology , Oxygen Consumption/physiology , Phosphorylation/physiology , Proto-Oncogene Proteins c-akt/metabolism , Proto-Oncogene Proteins c-bcl-2/metabolism , Signal Transduction/physiology
3.
Indian J Endocrinol Metab ; 22(4): 461-465, 2018.
Article in English | MEDLINE | ID: mdl-30148089

ABSTRACT

OBJECTIVES: The objective of the study was to understand the role of self-monitoring of blood glucose (SMBG) for better management of glycemic fluctuations, reducing the risk of complications, and the associated cost benefits for diabetes patients in India. MATERIALS AND METHODS: An Excel-based Cost Impact Model was developed to analyze the impact of SMBG by calculating the savings over a 10-year time period. A literature review was undertaken to model the impact of SMBG on the risk of complications and cardiovascular morbidities. The model was developed based on inputs from previous studies. RESULTS: In the base case, SMBG cohort was associated with a 10-year discounted cost of INR 718,340, resulting in an estimated saving of INR 120,173 compared to no SMBG cohort. Implementation of a once-daily SMBG protocol, for a decade, can reduce the complication-related costs. More frequent SMBG and tri-monthly hemoglobin A1c tests along with lifestyle changes can significantly reduce the financial burden on the patient over the lifespan. CONCLUSION: Our study has shown that proactive management of diabetes with SMBG can improve treatment outcomes and reduce morbidity and mortality associated with this disease. Near-normal blood glucose levels can bring in cost savings in the form of reduced long-term complications and avoidance of repeated hospitalization for the management of such complications, along with an improved quality of life.

4.
J Cell Biochem ; 118(5): 1227-1238, 2017 05.
Article in English | MEDLINE | ID: mdl-27791288

ABSTRACT

Nucleotide-binding and oligomerization domain like receptors (NLR) are pattern recognition receptors used to provide rapid immune response by detecting intracellular pathogen-associated molecules. Loss of NLR activity is implicated in genetic disorders, disruption of adaptive immunity, and chronic inflammation. One NLR protein, NOD2, is frequently mutated in Crohn's disease (CD), which is an inflammatory disease of the gastrointestinal tract. Three commonly occurring CD-associated NOD2 mutations, R702W, G908R, and L1007fs, are clustered near the regulatory domain, leucine rich region (LRR), and lowers the activity of NOD2 in response to muramyl dipeptide (MDP). As LRR is also the ligand binding domain, this suggests that the mutations either affect the binding of MDP or how the molecule responds to ligand binding. To model the role of R702 in ligand-dependent activation of NOD2, we used homology modeling to map the residue R702 to the interface between the oligomerization domain and LRR. We show that a peptide derived from NOD2(697-718) binds LRR in vitro, and upon co-expressing or importing the peptide into HEK293 expressing NOD2, there is an increase in the MDP-dependent NOD2 activity. The study thus suggests that the R702W mutation interferes with the conformational changes needed for MDP binding and activation. J. Cell. Biochem. 118: 1227-1238, 2017. © 2016 Wiley Periodicals, Inc.


Subject(s)
Acetylmuramyl-Alanyl-Isoglutamine/pharmacology , Nod2 Signaling Adaptor Protein/genetics , Nod2 Signaling Adaptor Protein/metabolism , Peptides/metabolism , Crohn Disease/genetics , HEK293 Cells , Humans , Models, Molecular , Mutation , Nod2 Signaling Adaptor Protein/chemistry , Protein Conformation , Protein Domains , Structural Homology, Protein
5.
Methods Mol Biol ; 1319: 143-54, 2015.
Article in English | MEDLINE | ID: mdl-26060073

ABSTRACT

Yeast surface display is commonly used to engineer affinity and design novel molecular interaction. By alternating positive and negative selections, yeast display can be used to engineer binders that specifically interact with the target protein at a defined site. Epitope-specific binders can be useful as inhibitors if they bind the target molecule at functionally important sites. Therefore, an efficient method of engineering epitope specificity should help with the engineering of inhibitors. We describe the use of yeast surface display to design single domain monobodies that bind and inhibit the activity of the kinase Erk-2 by targeting a conserved surface patch involved in protein-protein interaction. The designed binders can be used to disrupt signaling in the cell and investigate Erk-2 function in vivo. The described protocol is general and can be used to design epitope-specific binders of an arbitrary protein.


Subject(s)
Epitopes/genetics , Mitogen-Activated Protein Kinase 1/chemistry , Saccharomyces cerevisiae/genetics , Single-Domain Antibodies/biosynthesis , Binding Sites/drug effects , Humans , Mitogen-Activated Protein Kinase 1/antagonists & inhibitors , Mutation , Peptide Library , Protein Binding , Protein Engineering , Protein Kinase Inhibitors/metabolism , Protein Kinase Inhibitors/pharmacology , Saccharomyces cerevisiae/metabolism , Single-Domain Antibodies/genetics , Single-Domain Antibodies/pharmacology
6.
ACS Chem Biol ; 8(3): 608-16, 2013 Mar 15.
Article in English | MEDLINE | ID: mdl-23227961

ABSTRACT

Although the affinity optimization of protein binders is straightforward, engineering epitope specificity is more challenging. Targeting a specific surface patch is important because the biological relevance of protein binders depends on how they interact with the target. They are particularly useful to test hypotheses motivated by biochemical and structural studies. We used yeast display to engineer monobodies that bind a defined surface patch on the mitogen activated protein kinase (MAPK) Erk-2. The targeted area ("CD" domain) is known to control the specificity and catalytic efficiency of phosphorylation by the kinase by binding a linear peptide ("D" peptide) on substrates and regulators. An inhibitor of the interaction should thus be useful for regulating Erk-2 signaling in vivo. Although the CD domain constitutes only a small percentage of the surface area of the enzyme (~5%), sorting a yeast displayed monobody library with wild type (wt) Erk-2 and a rationally designed mutant led to isolation of high affinity clones with desired epitope specificity. The engineered binders inhibited the activity of Erk-2 in vitro and in mammalian cells. Furthermore, they specifically inhibited the activity of Erk-2 orthologs in yeast and suppressed a mutant phenotype in round worms caused by overactive MAPK signaling. The study therefore shows that positive and negative screening can be used to bias the evolution of epitope specificity and predictably design inhibitors of biologically relevant protein-protein interaction.


Subject(s)
Epitopes/genetics , Mitogen-Activated Protein Kinase 1/antagonists & inhibitors , Mitogen-Activated Protein Kinase 1/metabolism , Protein Engineering , Protein Kinase Inhibitors/chemistry , Protein Kinase Inhibitors/pharmacology , Signal Transduction/drug effects , Animals , Caenorhabditis elegans/metabolism , Fibronectins/chemistry , Fibronectins/genetics , Fibronectins/metabolism , HEK293 Cells , Humans , Mitogen-Activated Protein Kinase 1/chemistry , Models, Molecular , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Structure-Activity Relationship
7.
Biotechnol Bioeng ; 106(1): 27-41, 2010 May 01.
Article in English | MEDLINE | ID: mdl-20047188

ABSTRACT

Protein complexes are common in nature and play important roles in biology, but studying the quaternary structure formation in vitro is challenging since it involves lengthy and expensive biochemical steps. There are frequent technical difficulties as well with the sensitivity and resolution of the assays. In this regard, a technique that can analyze protein-protein interactions in high throughput would be a useful experimental tool. Here, we introduce a combination of yeast display and disulfide trapping that we refer to as stabilization of transient and unstable complexes by engineered disulfide (STUCKED) that can be used to detect the formation of a broad spectrum of protein complexes on the yeast surface using fluorescence labeling. The technique uses an engineered intersubunit disulfide to covalently crosslink the subunits of a complex, so that the disulfide-trapped complex can be displayed on the yeast surface for detection and analysis. Transient protein complexes are difficult to display on the yeast surface, since they may dissociate before they can be detected due to a long induction period in yeast. To this end, we show that three different quaternary structures with the subunit dissociation constant K(d) approximately 0.5-20 microM, the antibody variable domain (Fv), the IL-8 dimer, and the p53-MDM2 complex, cannot be displayed on the yeast surface as a noncovalent complex. However, when we introduce an interchain disulfide between the subunits, all three systems are efficiently displayed on the yeast surface, showing that disulfide trapping can help display protein complexes that cannot be displayed otherwise. We also demonstrate that a disulfide forms only between the subunits that interact specifically, the displayed complexes exhibit functional characteristics that are expected of wt proteins, the mutations that decrease the affinity of subunit interaction also reduce the display efficiency, and most of the disulfide stabilized complexes are formed within the secretory pathway during export to the surface. Disulfide crosslinking is therefore a convenient way to study weak protein association in the context of yeast display.


Subject(s)
Disulfides/metabolism , Membrane Proteins/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/metabolism , Kinetics , Membrane Proteins/chemistry , Models, Molecular , Protein Multimerization , Protein Stability , Protein Structure, Quaternary , Saccharomyces cerevisiae Proteins/chemistry
8.
Eur J Pharm Sci ; 37(2): 160-71, 2009 May 12.
Article in English | MEDLINE | ID: mdl-19429423

ABSTRACT

Multilayer films based on silk fibroin protein and gelatin was fabricated in aqueous solution for controlled drug release. The gradual build up of layer was investigated by UV-vis spectroscopy and was further analyzed through attenuated total reflectance-Fourier transform infrared spectroscopy. Scanning electron microscopy confirmed the presence of distinct layers within the multilayer system. Intervening dehydrating step by methanol treatment was used to control the structure and stability of the self-assembled silk fibroin/gelatin multilayer films. The films were tested for in vitro release using three different molecular weight model compounds namely trypan blue (961 Da), FITC-inulin (3.9 kDa) and FITC-BSA (66 kDa). The release profile of compounds revealed dependence on multilayer film degradation for sustained release. The release kinetics was further evaluated as a function of gelatin and buildup of layers suggesting their possible role in restricting initial burst leading to sustained compound release. MTT and confocal microscopy were used to assess cellular viability and biocompatibility of fabricated films using fibroblast cells. The results highlight the versatile and tunable properties of fibroin/gelatin multilayer films making them exciting candidates for the controlled release of a wide spectrum of bioactive molecules.


Subject(s)
Fibroins/chemistry , Gelatin/chemistry , Models, Chemical , Pharmacokinetics , Silk/chemistry , Biocompatible Materials , Microscopy, Electron, Scanning , Spectrophotometry, Ultraviolet , Spectroscopy, Fourier Transform Infrared
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