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1.
Front Genet ; 13: 831452, 2022.
Article in English | MEDLINE | ID: mdl-35860466

ABSTRACT

Methylation tests have been used for decades in regular DNA diagnostics focusing primarily on Imprinting disorders or specific loci annotated to specific disease associated gene promotors. With the introduction of DNA methylation (DNAm) arrays such as the Illumina Infinium HumanMethylation450 Beadchip array or the Illumina Infinium Methylation EPIC Beadchip array (850 k), it has become feasible to study the epigenome in a timely and cost-effective way. This has led to new insights regarding the complexity of well-studied imprinting disorders such as the Beckwith Wiedemann syndrome, but it has also led to the introduction of tests such as EpiSign, implemented as a diagnostic test in which a single array experiment can be compared to databases with known episignatures of multiple genetic disorders, especially neurodevelopmental disorders. The successful use of such DNAm tests is rapidly expanding. More and more disorders are found to be associated with discrete episignatures which enables fast and definite diagnoses, as we have shown. The first examples of environmentally induced clinical disorders characterized by discrete aberrant DNAm are discussed underlining the broad application of DNAm testing in regular diagnostics. Here we discuss exemplary findings in our laboratory covering this broad range of applications and we discuss further use of DNAm tests in the near future.

2.
Clin Epigenetics ; 11(1): 156, 2019 11 04.
Article in English | MEDLINE | ID: mdl-31685013

ABSTRACT

SETD1B is a component of a histone methyltransferase complex that specifically methylates Lys-4 of histone H3 (H3K4) and is responsible for the epigenetic control of chromatin structure and gene expression. De novo microdeletions encompassing this gene as well as de novo missense mutations were previously linked to syndromic intellectual disability (ID). Here, we identify a specific hypermethylation signature associated with loss of function mutations in the SETD1B gene which may be used as an epigenetic marker supporting the diagnosis of syndromic SETD1B-related diseases. We demonstrate the clinical utility of this unique epi-signature by reclassifying previously identified SETD1B VUS (variant of uncertain significance) in two patients.


Subject(s)
Anxiety/genetics , Autism Spectrum Disorder/genetics , DNA Methylation , Epilepsy/genetics , Histone-Lysine N-Methyltransferase/genetics , Intellectual Disability/genetics , Loss of Function Mutation , Adolescent , Adult , Child , Child, Preschool , CpG Islands , Epigenesis, Genetic , F-Box Proteins/genetics , Female , Genetic Markers , Humans , Infant, Newborn , Jumonji Domain-Containing Histone Demethylases/genetics , Male
3.
Clin Epigenetics ; 11(1): 53, 2019 03 21.
Article in English | MEDLINE | ID: mdl-30898153

ABSTRACT

Beckwith-Wiedemann syndrome (BWS) is caused due to the disturbance of imprinted genes at chromosome 11p15. The molecular confirmation of this syndrome is possible in approximately 85% of the cases, whereas in the remaining 15% of the cases, the underlying defect remains unclear. The goal of our research was to identify new epigenetic loci related to BWS. We studied a group of 25 patients clinically diagnosed with BWS but without molecular conformation after DNA diagnostics and performed a whole genome methylation analysis using the HumanMethylation450 Array (Illumina).We found hypermethylation throughout the methylome in two BWS patients. The hypermethylated sites in these patients overlapped and included both non-imprinted and imprinted regions. This finding was not previously described in any BWS-diagnosed patient.Furthermore, one BWS patient exhibited aberrant methylation in four maternally methylated regions-IGF1R, NHP2L1, L3MBTL, and ZDBF2-that overlapped with the differentially methylated regions found in BWS patients with multi-locus imprinting disturbance (MLID). This finding suggests that the BWS phenotype can result from MLID without detectable methylation defects in the primarily disease-associated loci (11p15). Another patient manifested small but significant aberrant methylation in disease-associated loci at 11p near H19, possibly confirming the diagnosis in this patient.


Subject(s)
Beckwith-Wiedemann Syndrome/diagnosis , DNA Methylation , Whole Genome Sequencing/methods , Beckwith-Wiedemann Syndrome/genetics , Chromosomes, Human, Pair 11/genetics , Female , Genomic Imprinting , Humans , Male , Oligonucleotide Array Sequence Analysis , Phenotype
4.
Eur Neuropsychopharmacol ; 29(1): 147-155, 2019 01.
Article in English | MEDLINE | ID: mdl-30415783

ABSTRACT

Oxytocin receptor gene (OXTR) DNA-methylation levels have been associated with trauma-exposure, mood- and anxiety disorders, and social processes relevant to posttraumatic stress disorder (PTSD). We hypothesized that OXTR methylation may play a role in the neurobiological underpinnings of PTSD. In the current study, we compared OXTR methylation between PTSD patients (n = 31, 14 females) and trauma-exposed controls (n = 36, 19 females). Additionally, the association between OXTR methylation and PTSD symptom severity and amygdala reactivity to an emotional faces task was assessed, as a neural hallmark of PTSD. DNA-methylation was investigated in the CpG island located at exon 3 of the OXTR, previously associated with OXTR expression. We observed a significant interaction between PTSD-status, sex and CpG-position on methylation levels. Post-hoc testing revealed that methylation levels at two specific CpG-sites were significantly higher in PTSD females compared to female trauma-exposed controls and PTSD males (CpGs Chr3:8809437, Chr3:8809413). No significant differences in methylation were observed between male PTSD patients and controls. Furthermore, within PTSD females, methylation in these CpG-sites was positively associated with anhedonia symptoms and with left amygdala responses to negative emotional faces, although this was no longer significant after stringent correction for multiple-comparisons. Though the modest size of the current sample is an important limitation, we are the first to report on OXTR methylation in PTSD, replicating previously observed (sex-specific) associations of OXTR methylation with other psychiatric disorders.


Subject(s)
DNA Methylation , Psychological Trauma/genetics , Receptors, Oxytocin/genetics , Sex Characteristics , Stress Disorders, Post-Traumatic/genetics , Amygdala/physiopathology , Case-Control Studies , CpG Islands/genetics , Facial Expression , Female , Genetic Predisposition to Disease/genetics , Humans , Male , Neuroimaging , Psychological Trauma/physiopathology , Psychological Trauma/psychology , Stress Disorders, Post-Traumatic/physiopathology , Stress Disorders, Post-Traumatic/psychology
5.
J Med Genet ; 51(2): 90-7, 2014 Feb.
Article in English | MEDLINE | ID: mdl-24253444

ABSTRACT

BACKGROUND: The T gene (brachyury gene) is the founding member of the T-box family of transcription factors and is vital for the formation and differentiation of the mesoderm and the axial development of all vertebrates. RESULTS: We report here on four patients from three consanguineous families exhibiting sacral agenesis, a persistent notochordal canal and abnormal ossification of the vertebral bodies, and the identification and characterisation of their underlying genetic defect. Given the consanguineous nature and the similarity of the phenotypes between the three families, we performed homozygosity mapping and identified a common 4.1 Mb homozygous region on chromosome 6q27, containing T, brachyury homologue (mouse) or T. Sequencing of T in the affected individuals led to the identification of a homozygous missense mutation, p.H171R, in the highly conserved T-box. The homozygous mutation results in diminished DNA binding, increased cell growth, and interferes with the normal expression of genes involved in ossification, notochord maintenance and axial mesoderm development. CONCLUSIONS: We have identified a shared homozygous mutation in three families in T and linked it to a novel syndrome consisting of sacral agenesis, a persistent notochordal canal and abnormal ossification of the vertebral bodies. We suggest that screening for the ossification of the vertebrae is warranted in patients with sacral agenesis to evaluate the possible causal involvement of T.


Subject(s)
Abnormalities, Multiple/genetics , Fetal Proteins/genetics , Notochord/abnormalities , Ossification, Heterotopic/genetics , Sacrum/abnormalities , Spine/abnormalities , T-Box Domain Proteins/genetics , Abnormalities, Multiple/diagnostic imaging , Abnormalities, Multiple/mortality , Amino Acid Sequence , Base Sequence , Cell Line, Tumor , Cell Proliferation , Chromosomes, Human, Pair 6/genetics , Comparative Genomic Hybridization , Consanguinity , Female , Genetic Association Studies , Homozygote , Humans , Infant , Infant, Newborn , Male , Mutation, Missense , Notochord/diagnostic imaging , Ossification, Heterotopic/diagnostic imaging , Ossification, Heterotopic/mortality , Pedigree , Protein Binding , Protein Transport , Sacrum/diagnostic imaging , Spine/diagnostic imaging , Syndrome , Ultrasonography, Prenatal
6.
J Clin Endocrinol Metab ; 98(12): 4942-52, 2013 Dec.
Article in English | MEDLINE | ID: mdl-24108313

ABSTRACT

CONTEXT: Ig superfamily member 1 (IGSF1) deficiency was recently discovered as a novel X-linked cause of central hypothyroidism (CeH) and macro-orchidism. However, clinical and biochemical data regarding growth, puberty, and metabolic outcome, as well as features of female carriers, are scarce. OBJECTIVE: Our objective was to investigate clinical and biochemical characteristics associated with IGSF1 deficiency in both sexes. METHODS: All patients (n = 42, 24 males) from 10 families examined in the university clinics of Leiden, Amsterdam, Cambridge, and Milan were included in this case series. Detailed clinical data were collected with an identical protocol, and biochemical measurements were performed in a central laboratory. RESULTS: Male patients (age 0-87 years, 17 index cases and 7 from family studies) showed CeH (100%), hypoprolactinemia (n = 16, 67%), and transient partial GH deficiency (n = 3, 13%). Pubertal testosterone production was delayed, as were the growth spurt and pubic hair development. However, testicular growth started at a normal age and attained macro-orchid size in all evaluable adults. Body mass index, percent fat, and waist circumference tended to be elevated. The metabolic syndrome was present in 4 of 5 patients over 55 years of age. Heterozygous female carriers (age 32-80 years) showed CeH in 6 of 18 cases (33%), hypoprolactinemia in 2 (11%), and GH deficiency in none. As in men, body mass index, percent fat, and waist circumference were relatively high, and the metabolic syndrome was present in 3 cases. CONCLUSION: In male patients, the X-linked IGSF1 deficiency syndrome is characterized by CeH, hypoprolactinemia, delayed puberty, macro-orchidism, and increased body weight. A subset of female carriers also exhibits CeH.


Subject(s)
Aging , Congenital Hypothyroidism/physiopathology , Genetic Diseases, X-Linked/physiopathology , Immunoglobulins/deficiency , Membrane Proteins/deficiency , Testicular Diseases/physiopathology , Adult , Aged, 80 and over , Child , Congenital Hypothyroidism/genetics , Congenital Hypothyroidism/immunology , Congenital Hypothyroidism/pathology , Family Health , Female , Genetic Diseases, X-Linked/genetics , Genetic Diseases, X-Linked/immunology , Genetic Diseases, X-Linked/pathology , Heterozygote , Human Growth Hormone/blood , Human Growth Hormone/deficiency , Humans , Immunoglobulins/genetics , Infant , Male , Membrane Proteins/genetics , Metabolic Syndrome/etiology , Organ Size , Prolactin/blood , Puberty, Delayed/etiology , Testicular Diseases/genetics , Testicular Diseases/immunology , Testicular Diseases/pathology , X Chromosome Inactivation
7.
Atherosclerosis ; 229(1): 169-73, 2013 Jul.
Article in English | MEDLINE | ID: mdl-23659872

ABSTRACT

OBJECTIVE: We report a novel lamin A/C (LMNA) mutation, p.Glu223Lys, in a family with extensive atherosclerosis, diabetes mellitus and steatosis hepatis. METHODS: Sequence analysis of LMNA (using Alamut version 2.2), co-segregation analysis, electron microscopy, extensive phenotypic evaluation of the mutation carriers and literature comparison were used to determine the loss of function of this mutation. RESULTS: The father of three siblings died at the age of 45 years. The three siblings and the brother and sister of the father were referred to the cardiovascular genetics department, because of the premature atherosclerosis and dysmorphic characteristics observed in the father at autopsy. The novel LMNA mutation, p.Glu223Lys, was identified in the proband and his two sons. Clinical evaluation revealed atherosclerosis, insulin resistance and hypertension in the proband and dyslipidemia and hepatic steatosis in all the patients with the mutation. CONCLUSION: Based on the facts that in silico analysis predicts a possibly pathogenic mutation, the mutation co-segregates with the disease, only fibroblasts from mutation carriers show nuclear blebbing and a similar phenotype was reported to be due to missense mutations in LMNA we conclude that we deal with a pathogenic mutation. We conclude that the phenotype is similar to Dunnigan-type familial partial lipodystrophy.


Subject(s)
Atherosclerosis/genetics , Family Health , Lamin Type A/genetics , Point Mutation/genetics , Adult , Age of Onset , Dermis/pathology , Diabetes Mellitus/genetics , Fatal Outcome , Fatty Liver/genetics , Female , Fibroblasts/pathology , Fibroblasts/ultrastructure , Humans , Male , Microscopy, Electron , Middle Aged , Netherlands , Pedigree , Young Adult
8.
Mol Genet Metab ; 107(3): 526-33, 2012 Nov.
Article in English | MEDLINE | ID: mdl-22818240

ABSTRACT

Niemann-Pick disease (NPD) is a neurovisceral lysosomal storage disorder caused by acid sphingomyelinase (ASM) deficiency, which can be categorized as either Niemann-Pick disease type A [NPD-A], with progressive neurological disease and death in early childhood, or as Niemann-Pick disease type B [NPD-B], with a more variable spectrum of manifestations. Enzyme replacement therapy (ERT) with recombinant sphingomyelinase is currently studied as potential treatment for NPD-B patients. The objective of this study is to characterize the clinical features of patients with ASM deficiency in the Netherlands and Belgium with focus on the natural disease course of NPD-B patients. Prospective and retrospective data on ASM deficient patients were collected in The Netherlands and part of Belgium. Patients with NPD-B that could be followed prospectively were evaluated every 6-12 months for pulmonary function tests, 6 minute walk test (6 MWT), imaging (bone marrow infiltration measured by QCSI, organ volumes by MRI and CT scan of the lungs) and biochemical markers. Twenty-five patients with ASM deficiency were identified (13 males, 12 females, median age 13years, range 1-59 years). Nine patients had died at the time of the study, including four NPD-A patients at the age of 1,1, 2, 3 and five NPDB patents at the age of 5, 6, 43, 56 and 60 years. There was a high prevalence of homozygosity and compound heterozygosity for the common p.Arg608del mutation in 43% and 19% of NPD-B patients, respectively. In NPD-B patients, thrombocytopenia was present in most, while anemia and leucopenia were less common (33% and 6 % respectively). HDL cholesterol was reduced in most patients. Pulmonary disease was severe in several patients. Follow-up up to 11 years revealed a gradual decrease in platelet count. Detailed investigations in 6 NPD-B patients with follow-up in 4 patients revealed remarkable stable disease parameters up to 6 years, with some decline in pulmonary function and 6 MWT. Bone marrow fat fractions were decreased, indicating the presence of storage macrophages. Lung involvement was not related to the extent of visceromegaly, cytopenia or bone marrow involvement. In conclusion, in NPD-B patients pulmonary disease is the most debilitating feature. Disease manifestations are mostly stable in attenuated patients. Bone marrow infiltration is a less prominent feature of the disease.


Subject(s)
Niemann-Pick Disease, Type A/physiopathology , Niemann-Pick Disease, Type B/physiopathology , Sphingomyelin Phosphodiesterase/genetics , Adolescent , Adult , Belgium , Biomarkers/analysis , Child , Child, Preschool , Female , Hepatomegaly/pathology , Humans , Infant , Lung/pathology , Male , Middle Aged , Mutation , Netherlands , Niemann-Pick Disease, Type A/enzymology , Niemann-Pick Disease, Type A/genetics , Niemann-Pick Disease, Type B/enzymology , Niemann-Pick Disease, Type B/genetics , Prospective Studies , Respiratory Function Tests , Retrospective Studies , Severity of Illness Index , Sphingomyelin Phosphodiesterase/metabolism , Splenomegaly/pathology , Tomography, X-Ray Computed
9.
Neth Heart J ; 19(7-8): 344-51, 2011 Aug.
Article in English | MEDLINE | ID: mdl-21533915

ABSTRACT

BACKGROUND: About 2-7% of familial cardiomyopathy cases are caused by a mutation in the gene encoding cardiac troponin I (TNNI3). The related clinical phenotype is usually severe with early onset. Here we report on all currently known mutations in the Dutch population and compared these with those described in literature. METHODS: TheTNNI3 gene was screened for mutations in all coding exons and flanking intronic sequences in a large cohort of cardiomyopathy patients. All Dutch index cases carrying a TNNI3 mutation that are described in this study underwent extensive cardiological evaluation and were listed by their postal codes. RESULTS: In 30 families, 14 different mutations were identified. Three TNNI3 mutations were found relatively frequently in both familial and non-familial cases of hypertrophic cardiomyopathy (HCM) or restrictive cardiomyopathy (RCM). Haplotype analysis showed that p.Arg145Trp and p.Ser166Phe are founder mutations in the Netherlands, while p.Glu209Ala is not. The majority of Dutch TNNI3 mutations were associated with a HCM phenotype. Mean age at diagnosis was 36.5 years. Mutations causing RCM occurred less frequently, but were identified in very young children with a poor prognosis. CONCLUSION: In line with previously published data, we found TNNI3 mutations to be rare and associated with early onset and severe clinical presentation.

10.
Blood Cells Mol Dis ; 46(1): 39-41, 2011 Jan 15.
Article in English | MEDLINE | ID: mdl-21056933

ABSTRACT

We describe monozygotic twin sisters, born to consanguineous Moroccan parents, who are highly discordant for the manifestations of Gaucher disease. Both carry Gaucher genotype N188S/N188S. One has severe visceral involvement, epilepsy, and a cerebellar syndrome. Her twin does not manifest any symptoms or signs of Gaucher disease but suffers from type 1 diabetes mellitus. The concurrence of a mild Gaucher mutation with a severe phenotype, as well as the occurrence of highly discordant phenotypes in a pair of monozygotic twins, is discussed.


Subject(s)
Cerebellar Diseases/etiology , Diabetes Mellitus, Type 1/complications , Diseases in Twins , Gaucher Disease , Phenotype , Twins, Monozygotic , Adolescent , Adult , Female , Gaucher Disease/complications , Gaucher Disease/diagnosis , Gaucher Disease/genetics , Gaucher Disease/pathology , Genotype , Glucosylceramidase/blood , Humans , Morocco , Mutation , Twins, Monozygotic/genetics , Young Adult
11.
Neth Heart J ; 18(5): 248-54, 2010 May.
Article in English | MEDLINE | ID: mdl-20505798

ABSTRACT

In this part of a series on cardiogenetic founder mutations in the Netherlands, we review the Dutch founder mutations in hypertrophic cardiomyopathy (HCM) patients. HCM is a common autosomal dominant genetic disease affecting at least one in 500 persons in the general population. Worldwide, most mutations in HCM patients are identified in genes encoding sarcomeric proteins, mainly in the myosin-binding protein C gene (MYBPC3, OMIM #600958) and the beta myosin heavy chain gene (MYH7, OMIM #160760). In the Netherlands, the great majority of mutations occur in the MYBPC3, involving mainly three Dutch founder mutations in the MYBPC3 gene, the c.2373_2374insG, the c.2864_2865delCT and the c.2827C>T mutation. In this review, we describe the genetics of HCM, the genotype-phenotype relation of Dutch founder MYBPC3 gene mutations, the prevalence and the geographic distribution of the Dutch founder mutations, and the consequences for genetic counselling and testing. (Neth Heart J 2010;18:248-54.).

12.
Eur J Med Genet ; 52(6): 404-8, 2009.
Article in English | MEDLINE | ID: mdl-19735747

ABSTRACT

We report on two families in which the parental origin of duplications of the BWS imprinted regions on chromosome 11p15 influences the phenotype. In family A the transmission of a t(4; 11)(q35; p15.5) translocation results in duplication of BWSIC1 and BWSIC2. If this duplication is transmitted from the father, the extra chromosomal material has the paternal imprint. This results in overexpression of IGF2 and consequently an overgrowth phenotype. If the duplication is transmitted from the mother, the extra chromosomal material has the maternal imprint, resulting in overexpression of CDKN1C and a growth retardation phenotype. In family B an interstitial duplication of BWSIC1 results in an overgrowth phenotype when inherited from the father, similar to family A. However, no change in phenotype is observed if the duplication is transmitted through the mother suggesting that increased dosage of maternally expressed genes in the duplicated region has limited effect on the phenotype.


Subject(s)
Chromosome Aberrations , Chromosomes, Human, Pair 11 , Genomic Imprinting , Chromosomes, Human, Pair 4/genetics , Cyclin-Dependent Kinase Inhibitor p57/genetics , Female , Humans , Phenotype , Pregnancy
13.
Atherosclerosis ; 204(1): 267-72, 2009 May.
Article in English | MEDLINE | ID: mdl-18842264

ABSTRACT

OBJECTIVE: A low plasma high-density lipoprotein cholesterol (HDL-c) concentration is an important risk factor for the development of atherosclerotic cardiovascular disease. HDL-c levels are abnormally low in type I Gaucher disease (GD) patients. The aim of this study was to determine whether GD is associated with premature atherosclerosis. METHODS: Lipid profiles, apolipoproteins, and carotid artery intima-media thickness (cIMT) were analyzed in 40 type I GD patients, 34 carriers and 41 control subjects. cIMT is a non-invasive validated biomarker for the status of atherosclerosis and present and future cardiovascular disease risk. RESULTS: Compared to control subjects, patients showed decreased HDL-c (1.1+/-0.3 mmol/L) as well as mildly decreased low-density lipoprotein cholesterol (LDL-c) levels (2.8+/-0.7 mmol/L), with an increased ApoB/ApoA1 ratio. In carriers, HDL-c levels were normal, but LDL-c levels were decreased (2.7+/-0.8 mmol/L). Mean cIMT measurements were not different in the three study groups (patients: 0.63+/-0.1mm versus carriers: 0.64+/-0.1mm versus control subjects: 0.65+/-0.1 mm). CONCLUSION: In Gaucher disease low HDL-c levels do not lead to premature atherosclerosis as assessed by cIMT measurement. This indicates that the inverse relationship between levels of HDL-c and risk of cardiovascular disease in the general population may not be present in all conditions characterised by low HDL-c levels.


Subject(s)
Cardiovascular Diseases/etiology , Cholesterol, HDL/blood , Gaucher Disease/blood , Adult , Aged , Apolipoprotein A-I/blood , Apolipoproteins B/blood , Biomarkers/blood , Cardiovascular Diseases/blood , Cardiovascular Diseases/diagnostic imaging , Carotid Artery, Common/diagnostic imaging , Carotid Artery, Internal/diagnostic imaging , Case-Control Studies , Cholesterol, LDL/blood , Cross-Sectional Studies , Down-Regulation , Female , Gaucher Disease/complications , Gaucher Disease/diagnostic imaging , Humans , Male , Middle Aged , Risk Assessment , Risk Factors , Ultrasonography
14.
J Inherit Metab Dis ; 30(1): 68-78, 2007 Feb.
Article in English | MEDLINE | ID: mdl-17206462

ABSTRACT

BACKGROUND: Fabry disease (OMIM 301500) is an X-linked lysosomal storage disorder with characteristic vascular, renal, cardiac and cerebral complications. Globotriaosylceramide (Gb(3)) accumulates in Fabry patients as a result of alpha-galactosidase A deficiency. The phenotypic variability is high, but the relationship between clinical symptoms in individual Fabry patients has not been uniformly documented. Also, the relation between the most prominent biochemical abnormalities, elevated Gb(3) levels in plasma and urine, and clinical symptoms is not firmly established. METHODS: Clinical and biochemical characteristics of 96 (25 deceased) Dutch Fabry patients were collected retrospectively and before the initiation of enzyme therapy. RESULTS: Clinical assessment revealed that median life expectancy was 57 years for male and 72 years for female patients. Cerebral complications, acroparaesthesias and gastrointestinal complications, but not cardiac and auditory complications, were all seen more frequently in male than female patients. Glomerular filtration rate (GFR) was highly variable in male patients, including 2 patients with GFR < 30 ml/min, but median GFR did not differ between males and females (103 and 101 ml/min, respectively). Hyperfiltration was more frequently observed in the female patient group. Microalbuminuria was present in 60% of males and 45% of females. No specific pattern of combined symptoms existed except for a relationship between left ventricular hypertrophy (LVH) and cerebral complications (males 36%, females 32%), or proteinuria (males 35%, females 31%). Gb(3) was found to be more elevated in plasma samples from male (n = 26; median 6.27 micromol/L (1.39-9.74)) than female Fabry patients (n = 37; median 2.16 (0.77-4.18)). This was also observed for urinary Gb(3): males (n = 22) median 1851 nmol/24 h (40-3724); females (n = 29) median 672 (86-2052). Plasma and urinary Gb(3) levels correlated with each other in both males (r = 0.4, p = 0.05) and females (r = 0.4, p = 0.03), but no correlation between elevated Gb(3) levels and clinical symptoms could be detected. CONCLUSION: Analysis of the characteristics of the Dutch Fabry cohort has revealed that a limited relationship between various disease manifestations exists and that individual symptoms do not correlate with elevated urinary or plasma Gb(3) levels, limiting their value as surrogate disease markers.


Subject(s)
Fabry Disease/diagnosis , Fabry Disease/genetics , Trihexosylceramides/blood , Trihexosylceramides/urine , Adolescent , Aged , Cohort Studies , Female , Glomerular Filtration Rate , Humans , Hypertrophy, Left Ventricular/diagnosis , Male , Middle Aged , Netherlands , Phenotype , Quality of Life , Retrospective Studies , Sex Factors , Surveys and Questionnaires
15.
Genet Test ; 10(2): 77-84, 2006.
Article in English | MEDLINE | ID: mdl-16792510

ABSTRACT

Familial hypercholesterolemia (FH) has been identified as a major risk factor for coronary vascular disease and is associated with mutations in the low-density liporotein receptor (LDLR) and apolipoprotein B (APOB) gene. The molecular basis of FH in the Dutch population is well understood. Approximately 160 different LDLR and APOB gene defects have been identified with a panel of 9 LDLR gene and 1 APOB gene frequently occurring mutations accounting for approximately 30% of all clinically diagnosed FH cases. As molecular diagnosis of FH is becoming increasingly widely applied, a variety of mutation detection rates is reported, ranging from as low as 30% and up to 80%. This variability appears to depend on the clinical criteria applied to identify patients with FH and on the strategies and methodologies used for mutation screening. In this study we describe the application of a stepwise screening approach, combining different methodologies, to detect mutations of the LDLR gene and APOB gene in 1465 patients with FH. A mutation was found in approximately 44% of the patients, which demonstrates that this is an effective strategy for the molecular diagnosis of FH.


Subject(s)
Apolipoproteins B/genetics , DNA Mutational Analysis , Genetic Testing/methods , Hyperlipoproteinemia Type II/genetics , Molecular Diagnostic Techniques/methods , Receptors, LDL/genetics , Adolescent , Adult , Child , Child, Preschool , Chromatography, High Pressure Liquid , Combinatorial Chemistry Techniques/methods , Female , Humans , Hyperlipoproteinemia Type II/epidemiology , Male , Middle Aged , Molecular Probe Techniques , Netherlands/epidemiology , Point Mutation , Sequence Analysis, DNA , Translocation, Genetic
16.
J Med Genet ; 43(7): 568-75, 2006 Jul.
Article in English | MEDLINE | ID: mdl-16236812

ABSTRACT

BACKGROUND: Cornelia de Lange syndrome (CdLS) is a multiple congenital anomaly syndrome characterised by a distinctive facial appearance, prenatal and postnatal growth deficiency, psychomotor delay, behavioural problems, and malformations of the upper extremities. Recently mutations in NIPBL, the human homologue of the Drosophila Nipped-B gene, were found to cause CdLS. Mutations have been found in 39% of reported cases. METHODS: Patients were enrolled in the study and classified into one of four groups based on clinical examination: classic, mild, possible, or definitively not CdLS. Three dimensional photography was taken of 20 subjects, and compared between groups. Behaviour was assessed with specific attention to autism. We searched for mutations in NIPBL and correlated genotype with phenotype. RESULTS: : We found mutations in 56% of cases. CONCLUSIONS: Truncating mutations were generally found to cause a more severe phenotype but this correlation was not absolute. Three dimensional facial imaging demonstrated the potential for classifying facial features. Behavioural problems were highly correlated with the level of adaptive functioning, and also included autism. No correlation of behaviour with the type of mutation was found.


Subject(s)
De Lange Syndrome/genetics , Mutation , Proteins/genetics , Autistic Disorder/genetics , Birth Weight , Cell Cycle Proteins , De Lange Syndrome/diagnosis , De Lange Syndrome/psychology , Diagnosis, Differential , Facial Expression , Female , Genotype , Growth Disorders/embryology , Humans , Infant, Newborn , Male , Netherlands , Phenotype , Social Support
17.
J Med Genet ; 42(11): 863-70, 2005 Nov.
Article in English | MEDLINE | ID: mdl-16272262

ABSTRACT

BACKGROUND: The aim of the study was to assess underlying genetic cause(s), clinical features, and response to therapy in catecholaminergic polymorphic ventricular tachycardia (CPVT) probands. METHODS AND RESULTS: We identified 13 missense mutations in the cardiac ryanodine receptor (RYR2) in 12 probands with CPVT. Twelve were new, of which two are de novo mutations. A further 11 patients were silent gene carriers, suggesting that some mutations are associated with low penetrance. A marked resting sinus bradycardia off drugs was observed in all carriers. On beta blocker treatment, 98% of the RYR2 mutation carriers remained symptom free with a median follow up of 2 (range: 2-37) years. CONCLUSION: CPVT patients with RYR2 mutation have bradycardia regardless of the site of the mutation, which could direct molecular diagnosis in (young) patients without structural heart disease presenting with syncopal events and a slow heart rate but with normal QTc at resting ECG. Treatment with beta blockers has been very effective in our CPVT patients during initial or short term follow up. Given the risk of sudden death and the efficacy of beta blocker therapy, the identification of large numbers of RYR2 mutations thus calls for genetic screening, early diagnosis, and subsequent preventive strategies.


Subject(s)
Bradycardia/genetics , Catecholamines/metabolism , Mutation , Polymorphism, Genetic , Ryanodine Receptor Calcium Release Channel/genetics , Tachycardia, Ventricular/genetics , Adolescent , Amino Acid Sequence , Child , Child, Preschool , Female , Humans , Male , Middle Aged , Molecular Sequence Data , Sequence Homology, Amino Acid , Syncope/genetics , Tachycardia/genetics
18.
Ned Tijdschr Geneeskd ; 149(29): 1601-4, 2005 Jul 16.
Article in Dutch | MEDLINE | ID: mdl-16078763

ABSTRACT

The autopsy of a 16-year-old boy who had died suddenly revealed hypertrophic cardiomyopathy (HCM). Molecular genetic investigation revealed mutations in the MYBPC3 gene. His surviving family members could then be examined and reassured that they did not carry the mutation. An 18-year-old boy who died suddenly turned out to have known HCM. No further investigations were done and no tissue was saved. Genetic investigation of his immediate family was impossible due to the lack of a known mutation in the family. Periodic examination in clinically unaffected family members was therefore advised. Sudden cardiac death at young age is not infrequently the first symptom of an inherited cardiac disease. Because these diseases usually inherit as an autosomal dominant trait, first-degree family members have a 50% chance of carrying the same genetic defect. Besides clinical cardiologic examination of the remaining family members, post-mortem molecular genetic investigation can be of value in reaching a diagnosis and in determining the subsequent therapeutic options for immediate relatives.


Subject(s)
Cardiomyopathy, Hypertrophic, Familial/genetics , Cardiomyopathy, Hypertrophic, Familial/mortality , Carrier Proteins/genetics , Death, Sudden, Cardiac/etiology , Mutation , Adolescent , DNA Mutational Analysis , Genetic Testing , Humans , Male , Pedigree
19.
Eur J Epidemiol ; 20(6): 549-57, 2005.
Article in English | MEDLINE | ID: mdl-16121765

ABSTRACT

INTRODUCTION: Survival of patients with congenital heart disease has dramatically improved after surgical repair became available 40 years ago. Instead of a mortality of 85% during childhood following the natural course, over 85% of these infants are now expected to reach adulthood. However, data on long-term outcome is scarce due to the lack of large, national registries. Moreover, little is known about the genetic basis of congenital heart defects. In 2000, the Interuniversity Cardiology Institute of the Netherlands and the Netherlands Heart Foundation have taken the initiative to develop a national registry and DNA-bank of patients with congenital heart disease in the Netherlands named CONCOR. OBJECTIVES: The aims of the CONCOR project are to facilitate investigation of the prevalence and long-term outcome of specific congenital heart defects and their treatment, to develop an efficient organisational structure for the improvement of healthcare for patients with congenital heart disease, and to allow investigation of the molecular basis of congenital heart defects. METHODS: After informed consent, research nurses enter data of participating patients into the CONCOR database using a web application. Data is transferred over the Internet via a secure connection. About 20 ml blood is withdrawn from the patient, and the DNA is isolated and stored. From each participating patient family history on congenital heart disease is obtained. RESULTS: Within two and a half years more than 4200 patients have agreed to participate. More than 99% of the patients that were asked have given their consent to participate in CONCOR. From 60% of these patients DNA has already been obtained. Mean age of the patients included is 34 years; more than 85% of the patients are younger than 45 years. Late complications occur frequently and the incidence increases with advancing age. 18% of the patients are known with supraventricular or ventricular arrhythmias. 2% of the included patients suffered a cerebrovascular accident, 139 (3%) had endocarditis. 6% of the patients has pulmonary hypertension or Eisenmenger syndrome. More than 15% of the patients reported an affected family member with congenital heart disease in the first, second, or third degree. 6% has an affected first-degree relative, and 4% a second-degree relative. Already 10 research projects have started using the CONCOR data and DNA. CONCLUSION: The population of patients with congenital heart disease is young and rapidly growing. Late complications occur frequently and the incidence increases with advances age. The CONCOR registry and DNA-bank facilitates research on prevalence and long-term outcome and allows investigation of the molecular basis of congenital heart disease.


Subject(s)
Academies and Institutes , DNA/blood , DNA/genetics , Databases, Genetic , Foundations , Heart Defects, Congenital/epidemiology , Heart Defects, Congenital/genetics , Registries , Adolescent , Adult , Aged , Aged, 80 and over , Database Management Systems , Female , Genetic Predisposition to Disease/epidemiology , Genetic Predisposition to Disease/genetics , Heart Defects, Congenital/complications , Hospitals , Humans , Interinstitutional Relations , Internet , Male , Middle Aged , Netherlands/epidemiology , Pilot Projects , Prevalence , Time
20.
Ned Tijdschr Geneeskd ; 148(35): 1712-5, 2004 Aug 28.
Article in Dutch | MEDLINE | ID: mdl-15468898

ABSTRACT

The granting of a patent by the European Patent Office to Myriad Genetics on the sequence of the BRCA-1 gene in 2001 prompted the Dutch Minister of Healthcare and the Minister of Education, Culture and Science to ask for advice. The Royal Netherlands Academy of Arts and Science (KNAW) prepared a report in 2003 entitled: 'The consequences of granting patents on human genes for scientific research in The Netherlands'. Another recommendation (by Van de Bunt) entitled: 'A code of gene patenting' was also published in 2003. The KNAW report recommends, among others: a redefinition of the 'research exemption' and renewed discussion on a 'grace period'. The Van de Bunt report concludes, among other things, that some holders of gene patents cause unwanted side effects, but that the patent system itself provides sufficient possibilities to prevent these side effects. In a comment on both reports, the Dutch Ministry of Healthcare concluded: 'There is no reason to change the current patent system'. One should be more critical, however, and favour the possibility of a 'diagnostic exemption' in which DNA-diagnostics would be excluded from patenting.


Subject(s)
Biomedical Research , Genetics , Patents as Topic , Biomedical Research/ethics , Genetics/ethics , Humans , Netherlands , Patents as Topic/ethics , Patents as Topic/legislation & jurisprudence
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