Comparative ENDOR study at 34 GHz of the triplet state of the primary donor in bacterial reaction centers of Rb. sphaeroides and Bl. viridis.

The primary electron donor (P) in the photosynthetic bacterial reaction center of Rhodobacter sphaeroides and Blastochloris viridis consists of a dimer of bacteriochlorophyll a and b cofactors, respectively. Its photoexcited triplet state in frozen solution has been investigated by time resolved ENDOR spectroscopy at 34 GHz. The observed ENDOR spectra for (3)P865 and (3)P960 are essentially the same, indicating very similar spin density distributions. Exceptions are the ethylidene groups unique to the bacteriochlorophyll b dimer in (3)P960. Strikingly, the observed hyperfine coupling constants of the ethylidene groups are larger than in the monomer, which speaks for an asymmetrically delocalized wave function over both monomer halves in the dimer. The latter observation corroborates previous findings of the spin density in the radical cation states P 865 (•+) (Lendzian et al. in Biochim Biophys Acta 1183:139-160, 1993) and P 960 (•+) (Lendzian et al. in Chem Phys Lett 148:377-385, 1988). As compared to the bacteriochlorophyll monomer, the hyperfine coupling constants of the methyl groups 2(1) and 12(1) are reduced by at least a factor of two, and quantitative analysis of these couplings gives rise to a ratio of approximately 3:1 for the spin density on the halves PL:PM. Our findings are discussed in light of the large difference in photosynthetic activity of the two branches of cofactors present in the bacterial reaction center proteins.

Reversed freeze quench method near the solvent phase transition.

Freeze quenching is a general method for trapping reaction intermediates on a (sub)millisecond time scale. The method relies on a mixing and subsequent rapid freezing of solutions of reactants. If the reaction is limited by diffusion, it may be advantageous to initially mix the reactants under conditions where the reaction does not proceed, e.g., by mixing them at low temperature as solids. The temperature may then be raised close to the melting point of the solvent. Depending on the viscosity of the solvent, the temperature can be raised either by heating or by applying laser pulses of nanosecond length with concomitant conversion of light into heat. A reduction of the dead time and a good control of the reaction speed in comparison to the standard freeze quench technique has been achieved with this method. The feasibility of the method in combination with EPR spectroscopy is verified by examining the important prototypical reductions of benzoquinone and 2,6-dichlorophenolindophenol by ascorbate as representatives for two-step redox reactions. By using light pulses of a laser, the reaction could be driven with rates lowered by 4 orders of magnitude as compared to room temperature reaction rates. This has allowed the observation of previously unobserved radical intermediates: the reduction of DCPIP by ascorbate is found to be strongly pH dependent. It proceeds via two one-electron steps at low pH, whereas at neutral pH, the reduction of DCPIP by ascorbate proceeds in a 1:2 stoichiometry followed by a disproportionation of the ascorbate radicals.

Photoinduced charge separation in an organic donor-acceptor hybrid molecule.

Photoinduced charge separation in blends of organic materials of different electronic affinity and in organic donor-acceptor hybrids is a process of increasing importance for biological and artificial energy conversion and photovoltaics. Organic polymer solar cells are composed of an electron donor and an electron acceptor between which an electron transfer occurs after excitation by sunlight. Charge separation results in the formation of donor cation radicals and acceptor anion radicals. Here, we present our studies on a donor-acceptor hybrid molecule composed of a phenylene-bithiophene macrocycle used as a donor and a perylene bisimide acceptor. Using continuous wave EPR and modern pulsed EPR methodology in combination with light excitation, intermolecular as well as intramolecular charge separation has been observed. Light-induced charge separation observed upon selective excitation of either one of the chromophores indicates that both LUMO-based and HOMO-based electron transfer from donor to acceptor takes place. These experimental findings are corroborated by DFT calculations in which the HOMO of the donor-acceptor hybrid molecule is found at the phenylene-bithiophene macrocycle and the LUMO at the perylene bisimide.

Spin density distribution of the excited triplet state of bacteriochlorophylls. Pulsed ENDOR and DFT studies.

The photoexcited triplet states of bacteriochlorophyll a and bacteriochlorophyll b have been investigated by ENDOR spectroscopy at 34 GHz in frozen solution and by DFT calculations. The spin density distributions in the triplet state were found to be similar for bacteriochlorophyll a and bacteriochlorophyll b except for the presence of spin density on carbon 8(1) in bacteriochlorophyll b. Judging from a comparison with ENDOR experiments for the radical cation and anion, the triplet state in bacteriochlorophylls cannot be explained as being a simple HOMO-->LUMO excitation of Gouterman orbitals. Rather, it must be described as a mixture of HOMO-->LUMO and HOMO-1-->LUMO excitations for a satisfactory explanation of the observed hyperfine interactions. The observed hyperfine couplings in the ENDOR spectra were assigned, and the field dependence of the signals was found to be fully compatible with the orientation of the zero-field splitting tensor determined from magnetophotoselection studies.

Solution structure of stem-loop alpha of the hepatitis B virus post-transcriptional regulatory element.

Chronic hepatitis B virus (HBV) infections may lead to severe diseases like liver cirrhosis or hepatocellular carcinoma (HCC). The HBV post-transcriptional regulatory element (HPRE) facilitates the nuclear export of unspliced viral mRNAs, contains a splicing regulatory element and resides in the 3'-region of all viral transcripts. The HPRE consists of three sub-elements alpha (nucleotides 1151-1346), beta1 (nucleotides 1347-1457) and beta2 (nucleotides 1458-1582), which confer together full export competence. Here, we present the NMR solution structure (pdb 2JYM) of the stem-loop alpha (SLalpha, nucleotides 1292-1321) located in the sub-element alpha. The SLalpha contains a CAGGC pentaloop highly conserved in hepatoviruses, which essentially adopts a CUNG-like tetraloop conformation. Furthermore, the SLalpha harbours a single bulged G residue flanked by A-helical regions. The structure is highly suggestive of serving two functions in the context of export of unspliced viral RNA: binding sterile alpha motif (SAM-) domain containing proteins and/or preventing the utilization of a 3'-splice site contained within SLalpha.

Low-temperature pulsed EPR study at 34 GHz of the triplet states of the primary electron Donor P865 and the carotenoid in native and mutant bacterial reaction centers of Rhodobacter sphaeroides.

The photosynthetic charge separation in bacterial reaction centers occurs predominantly along one of two nearly symmetric branches of cofactors. Low-temperature EPR spectra of the triplet states of the chlorophyll and carotenoid pigments in the reaction center of Rhodobacter sphaeroides R-26.1, 2.4.1 and two double-mutants GD(M203)/AW(M260) and LH(M214)/AW(M260) have been recorded at 34 GHz to investigate the relative activities of the "A" and "B" branches. The triplet states are found to derive from radical pair and intersystem crossing mechanisms, and the rates of formation are anisotropic. The former mechanism is operative for Rb. sphaeroides R-26.1, 2.4.1, and mutant GD(M203)/AW(M260) and indicates that A-branch charge separation proceeds at temperatures down to 10 K. The latter mechanism, derived from the spin polarization and operative for mutant LH(M214)/AW(M260), indicates that no long-lived radical pairs are formed upon direct excitation of the primary donor and that virtually no charge separation at the B-branch occurs at low temperatures. When the temperature is raised above 30 K, B-branch charge separation is observed, which is at most 1% of A-branch charge separation. B-branch radical pair formation can be induced at 10 K with low yield by direct excitation of the bacteriopheophytin of the B-branch at 590 nm. The formation of a carotenoid triplet state is observed. The rate of formation depends on the orientation of the reaction center in the magnetic field and is caused by a magnetic field dependence of the oscillation frequency by which the singlet and triplet radical pair precursor states interchange. Combination of these findings with literature data provides strong evidence that the thermally activated transfer step on the B-branch occurs between the primary donor, P865, and the accessory bacteriochlorophyll, whereas this step is barrierless down to 10 K along the A-branch.