Polyhydroxyalkanoate (PHA) granule formation in Ralstonia eutropha cells: a computer simulation.

Computer simulation of polyhydroxyalkanoate (PHA) granule formation in vivo could help to design strategies to optimize the fermentation process and achieve higher yields of PHA. It could also suggest biotechnological approaches to control the granule size and molecular weight of the polymer. A computer program simulating the formation of PHA granules inside a Ralstonia eutropha cell was developed, based on published experimental data. The results are applicable to R. eutropha cells or other microorganisms and transgenic plants, where polyhydroxybutyrate production is made possible by heterologous expression systems. The simulation starts at the outset of the PHA accumulation phase when the cells are small and contain no PHA granules. In the presence of abundant glucose, the cell responds to phosphorus limitation by producing 3-hydroxybutyryl-CoA which undergoes polymerization on the few PHA synthase molecules present in the cytoplasm. The amphiphilic PHA synthase-PHA complex attracts additional PHA synthase molecules and granules begin to grow from these initiation sites. Phosphorus limitation and the appearance of PHA in the cytoplasm also stimulate production of phasin molecules that attach themselves to the growing granules. As the granules grow bigger, they begin to touch each other and move to optimize their packing. The phasin coat prevents the granules from coalescing. The size of the cell increases and its prolate ellipsoid shape becomes closer to spherical. The accumulation process stops either when the supply of glucose is exhausted or when the granules become tightly packed within the cell, so that access to their surface is limited. All important variables, such as cell dimensions, granule size, counts of granule-associated molecules, PHA yield, degree of polymerization of the PHA molecules, etc., are recorded in real time during the simulation. Examples of virtual experiments with the cell and their results are shown.

The role of phasins in the morphogenesis of poly(3-hydroxybutyrate) granules.

Recent developments in the understanding of the structure of polyhydroxyalkanoate, PHA, granules in bacteria are documented in the literature and point to the role of structural proteins, phasins, in granule formation and stabilization. We have previously conceived a computer program which successfully simulates granule formation in vitro, in the absence of phasins. Now we are extending the computer model to a more complex system, including phasins, to quantify their anticipated effect on the granule properties. The simulation enabled us to propose real experiments to test the validity of the model and provide a framework for a better understanding of PHA granule formation in vivo.

Gamma-ray crosslinking of poly(3-hydroxyoctanoate-co-undecenoate).

The gamma-ray crosslinking of films made of poly(3-hydroxyoctanoate) containing undecenoate moieties (up to 33 mole%) were studied. X-ray diffraction, thermal analysis, dynamic mechanical analysis (DMA), solid state nuclear magnetic resonance (NMR) spectroscopy and degree of crosslinking (swelling analysis) as a function of irradiation dose were evaluated for treatments in air or in N(2) atmosphere. After uncrosslinked material was isolated by CHCl(3) extraction, solid state NMR data suggested that only a small percentage of the double bonds took part in the formation of irradiation crosslinks. Crosslinking in N(2) was more efficient than in air and a 20 kGy dose was sufficient for optimal crosslinking. The X-ray diffraction patterns of the polymer films were unaffected by moderate irradiation. The use of sodium hypochlorite to isolate poly(3-hydroxyoctanoate-co-undecenoate) samples resulted in partial chlorination of the double bonds and considerable depolymerization.

Magnetic nanostructured composites using alginates of different M/G ratios as polymeric matrix.

Alginate extracted from Sargassum fluitans and Macrocystis pyrifera with different molecular weights and mannuronic/guluronic ratios, M/G, were used as gel matrixes in order to obtain magnetic nanostructured composites. Magnetic nanocrystalline particles of iron oxides were formed inside the alginate matrix by in situ alkaline oxidation of ferrous ions. The magnetic materials obtained were subjected to several oxidative cycles and the increment in iron content was determined after each cycle. X-ray diffraction, magnetometry and Mössbauer spectroscopy were used to examine the materials. The high magnetic response, the absence of hysteresis, and the centered paramagnetic doublet in the Mössbauer spectra indicate the presence of nanocrystalline particles with a superparamagnetic behavior. X-ray diffractograms show peaks that correspond to maghemite. After the first cycle, Sargassum had four times the magnetic response of Macrocystis, which had more than twice the M/G ratio.

Characterization of a crosslinked high amylose starch excipient.

A controlled release excipient based on sodium trimetaphosphate (STMP) crosslinked high amylose starch has been examined by 13C CP/MAS NMR. The dry excipient powder is pressed to a hard tablet whose volume increase in H2O runs parallel to the STMP concentration used. The known polymorph resonances of single helix 'V' starch (hydrated) and double helix 'B' starch (hydrated) both contribute to the spectrum corresponding to the swollen tablet. The wet tablet when loaded with a pharmaceutical agent provides a near zero-order release profile for up to 20 h. The swelling and drug release behaviour is explained in terms of self-assembly of the STMP treated starch nanomolecular particles. These particles are drawn together by "self-assembly" due to formation of amylose double helices as water penetrates the tablet. An optimum level of chemical crosslinking ensures the integrity of the swollen tablet whose sponge-like structure enclosed by a membranous surface is responsible for sustained release.

Determination of solubility parameters for poly(3-hydroxyalkanoates).

The three dimensional solubility parameters defined by Hansen are based on dispersion forces between structural units, interaction between polar groups and hydrogen bonding. For polar polymers such as poly(3-hydroxyalkanoates), P(3HA), this approach was used to obtain the three coordinates of a solubility parameter in terms of: a dispersion part, a polar part and a hydrogen bonding part. Thirty-eight different solvents for poly(3-hydroxybutyrate), PHB, which are mentioned in the literature are examined by this method and the theoretical predictions are compared with the experimental reports. Another overall comparison between PHA polymers provides their Hansen and Hildebrand parameters for side chain lengths up to C13. In this series a linear progression in calculated solubility parameters with side chain length was found. An Appendix provides information and data on calculation of the solubility parameters. While the solubility information is limited and only covers homopolymers, it should help to highlight some of the contradictions regarding PHB solubility. This semi-empirical approach is only valid for amorphous polymers hence crystallinity effects, which are important with PHB, as well as molecular weight effects still require analysis.

Polyhydroxyalkanoates: materials for delivery systems.

An overview of polyhydroxyalkanoates as biodegradable and biocompatible materials for the development of drug delivery systems is presented. Polymers currently used for medical applications are compared with polyhydroxyalkanoates. The biochemical and physical properties of polyhydroxyalkanoates, including their biosynthesis, are discussed. Previous delivery systems based on polyhydroxyalkanoates are reviewed and specific examples from anticancer drugs, antiviral drugs, and contraceptives are highlighted. While polyhydroxyalkanoates have not been extensively studied for their potential use as drug delivery materials, several advantages and limitations are apparent.

Effect of electrostatic interaction on phase separation behaviour of chitin crystallite suspensions.

Optical and electron microscopy were used to observe the dynamics of the phase separation in aqueous chitin suspensions prepared by HCl hydrolysis of crab chitin. Freeze-fracture transmission electron microscopy reveals that chitin crystallites are partially aggregated in the suspension and have an average length of 200 nm and an average width of 8 nm. They exhibit a positive surface charge of approximately 0.5 e/nm2 when fully protonated. The liquid crystal-forming aqueous suspensions of such crystallites are investigated through phase diagrams and Zeta potential measurements for different ionic strength. Exposure of the suspension to a low concentration of univalent electrolyte has a negligible effect on phase separation because of the contribution of the charged crystallites themselves to the ionic strength. The thickness of the effective repulsive layer is estimated both from the phase diagrams according to Onsager's theory and from the computed interaction energy derived from the Poisson-Boltzmann equation using the experimental Zeta potential as surface potential. When the contribution of crystallites to the ionic strength is taken into account and an hypothetical linear charge density close to the Manning limit is assumed, there is good agreement with the Debye length.

In vitro chiral nematic ordering of chitin crystallites.

Microfibrillar fragments of purified crab and shrimp chitin were prepared by hydrolysis in 3 M HCl at its boiling point (104 degrees C). After removal of the acid by centrifugal washing and dialysis, an ultrasound treatment converts the residual product to a colloidal suspension stabilized by NH3+ charges. When dewatered to a critical concentration, spontaneous formation of a two-phase equilibrium system system occurs. The upper phase (lower concentration) is isotropic and the lower phase is anisotropic. The latter displays chiral nematic order and dries to a solid film which mimics the helicoid organization characteristic of the chitin microfibrils in the cuticle of arthropods.

Helicoidal self-ordering of cellulose microfibrils in aqueous suspension.

In many skeletal support systems of plants and animals, cellulose, chitin, and collagen occur in the form of microfibrils ordered in a chiral nematic fashion (helicoids). However, these structures remain poorly understood due to the many constituents present in biological tissues. Here we report an in vitro system that attracts by its simplicity. Only one chemical component, cellulose, is present in the form of fibrillar fragments dispersed in water. Above a critical concentration the colloidal dispersion separates spontaneously into a chiral nematic liquid crystalline phase. On drying this phase solidifies into regularly twisted fibrillar layers that mimic the structural organization of helicoids in nature.

Effect of nitrogen limitation on long-side-chain poly-beta-hydroxyalkanoate synthesis by Pseudomonas resinovorans.

Pseudomonas resinovorans produced poly-beta-hydroxyalkanoates (PHAs) when grown on hydrocarbons but not on glucose. In a chemostat culture, the PHA composition was beta-hydroxybutyrate (C4)-beta-hydroxyhexanoate (C6)-beta-hydroxyoctanoate (C8)-beta-hydroxydecanoate (C10) (1:15:75:9) on octanoate and C4-C6-C8-C10 (8:62:23:7) on hexanoic acid. Contrary to the reported behavior of Pseudomonas oleovorans, the PHA accumulation rate increased under ammonium limitation on octanoate.

Continuous Production of Long-Side-Chain Poly-beta-Hydroxyalkanoates by Pseudomonas oleovorans.

Shake flask experiments showed that Pseudomonas oleovorans began to be growth inhibited at 4.65 g of sodium octanoate liter, with total inhibition at 6 g liter. In chemostat studies with 2 g of ammonium sulfate and 8 g of octanoate liter in the feed, the maximum specific growth rate was 0.51 h, and the maximum specific rate of poly-beta-hydroxyalkanoate (PHA) production was 0.074 g of PHA g of cellular protein h at a dilution rate (D) of 0.25 h. When the specific growth rate (mu) was <0.3 h, the PHA composition was relatively constant with a C(4)/C(6)/C(8)/C(10) ratio of 0.1:1.7:20.7:1.0. At mu > 0.3 h, a decrease in the percentage of C(8) with a concomitant increase in C(10) monomers as mu increased was probably due to the effects of higher concentrations of unmetabolized octanoate in the fermentor. At D = 0.24 h and an increasing carbon/nitrogen ratio, the percentage of PHA in the biomass was constant at 13% (wt/wt), indicating that nitrogen limitation did not affect PHA accumulation. Under carbon-limited conditions, the yield of biomass from substrate was 0.76 g of biomass g of octanoate consumed, the yield of PHA was 0.085 g of PHA g of octanoate used, and 7.9 g of octanoate was consumed for each gram of NH(4) supplied. The maintenance coefficient was 0.046 g of octanoate g of biomass h. Replacement of sodium octanoate with octanoic acid appeared to result in transport-limited growth due to the water insolubility of the acid.

Chiral poly(beta-hydroxyalkanoates): an adaptable helix influenced by the alkane side-chain.

Bacterial copolyesters of poly(beta-hydroxyalkanoates) (PHA) with average side-chain lengths between C5 and C7 crystallize as a 21 helix in an orthorhombic lattice with two molecules per unit cell. The fibre repeat, or c dimension, is 4.55 A on average, compared with 5.96 and 5.56 A for poly(beta-hydroxybutyrate) (PHB) and poly(beta-hydroxyvalerate) (PHV), respectively. This collapse of the c dimension while maintaining the 21 helical symmetry may be thought of as crystallization driven by side-chain packing influences. This class of PHA with homologous hydrocarbon side-chains must form ordered sheets with the extended alkane branches in polyethylene-like domains. The melting point, glass transition temperature and fibre repeat change regularly as a function of average number of side-chain carbons for the whole family of PHA. X-ray diffraction of a melt-crystallized PHA indicated a maximum crystallinity of about 25%, achieved only after several hours at room temperature. Compared with P(HB-co-HV) polyesters, the stress-strain curves of PHA polyesters studied are typical of elastomers. 13C-n.m.r. spectra and relaxation times of the bulk phase amorphous regions of these polymers demonstrate the high degree of motional freedom of the side-chains and the significantly slower motion for the backbone carbons. 13C n.m.r. was also used to estimate the percentage crystallinity which is in agreement with the X-ray diffraction results. Modelling and conformational analysis of single chains using the virtual bond approach lead to two possible models for the crystalline helix: 'herringbone' versus 'comb-like'.

Conformation of crystalline type III pneumococcal polysaccharide.

The conformation of crystalline Type III pneumococcal polysaccharide, poly[(1 yields 3)-beta-D-GlcpA-(1 yields 4)-beta-D-Glcp], has been studied by X-ray diffraction and stereochemical analysis. The X-ray pattern, recorded at 80% relative humidity, led to a trigonal unit-cell, with alpha = beta = 1.028 nm, c = 2.77 nm, and gamma = 120 degrees. Meridional reflections on the third and the sixth layer-lines show that the chain consists of a three-fold helix, with a repeat of 0.923 nm. Conformational analysis, by the virtual-bond method, shows that one right-handed and two left-handed helices are equally favorable, on the basis of energies of isolated chains. Packing of the three helix models in the unit cell, by contact-distance criteria, ruled out the possibility of the right-handed helical conformation. One of the left-handed helices has intramolecular hydrogen-bonds O-3'...O-5 and O-2...O-6' between the residues in the (1 yields 4) linkage, and O-4'...O-5 between those in the (1 yields 3) linkage. In the other left-handed helix, the O-4'...O-5 hydrogen bond is replaced by an O-2...O-2' hydrogen bond. The choice between the two left-handed helix models is inhibited by the paucity of X-ray intensity data.

Distribution and conformation of crystalline nigeran in hyphal walls of Aspergillus niger and Aspergillus awamori.

Hyphal walls of Aspergillus awamori containing increased amount of the alpha-glucan, nigeran, became correspondingly more opaque when viewed in the electron microscope as shadowed preparations. However, increased polymer deposition was not accompanied by any significant change in wall thickness. The nigeran of both A. awamori and Aspergillus niger occurred in situ in a crystalline conformation identical to that of single crystals prepared with pure polysaccharide. Furthermore, this polymer was the dominant crystalline material in the hyphae whether or not they were enriched in nigeran. Enzymic digestion of nigeran in A. niger and A. awamori revealed that the bulk of the polymer was exposed to the cell's exterior. However, a certain fraction was accessible to enzymic attack only after the wall was treated with boiling water. A third portion, detectable only by x-ray diffraction, was associated with other components and could not be extracted, even with prolonged boiling. It was removed by hot, dilute alkali and was associated in the wall with another glucan fraction. Dry heating of A. niger walls altered their susceptibility to enzymic digestion of nigeran in situ. It is proposed that this treatment introduces interstices in the crystal surface that facilitate attack.