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1.
Article in English | WPRIM (Western Pacific) | ID: wpr-1000458

ABSTRACT

Objectives@#A substantial portion of the data contained in Electronic Health Records (EHR) is unstructured, often appearing as free text. This format restricts its potential utility in clinical decision-making. Named entity recognition (NER) methods address the challenge of extracting pertinent information from unstructured text. The aim of this study was to outline the current NER methods and trace their evolution from 2011 to 2022. @*Methods@#We conducted a methodological literature review of NER methods, with a focus on distinguishing the classification models, the types of tagging systems, and the languages employed in various corpora. @*Results@#Several methods have been documented for automatically extracting relevant information from EHRs using natural language processing techniques such as NER and relation extraction (RE). These methods can automatically extract concepts, events, attributes, and other data, as well as the relationships between them. Most NER studies conducted thus far have utilized corpora in English or Chinese. Additionally, the bidirectional encoder representation from transformers using the BIO tagging system architecture is the most frequently reported classification scheme. We discovered a limited number of papers on the implementation of NER or RE tasks in EHRs within a specific clinical domain. @*Conclusions@#EHRs play a pivotal role in gathering clinical information and could serve as the primary source for automated clinical decision support systems. However, the creation of new corpora from EHRs in specific clinical domains is essential to facilitate the swift development of NER and RE models applied to EHRs for use in clinical practice.

2.
Acta Pharmaceutica Sinica B ; (6): 618-631, 2023.
Article in English | WPRIM (Western Pacific) | ID: wpr-971731

ABSTRACT

The mammalian carboxylesterase 1 (Ces1/CES1) family comprises several enzymes that hydrolyze many xenobiotic chemicals and endogenous lipids. To investigate the pharmacological and physiological roles of Ces1/CES1, we generated Ces1 cluster knockout (Ces1 -/- ) mice, and a hepatic human CES1 transgenic model in the Ces1 -/- background (TgCES1). Ces1 -/- mice displayed profoundly decreased conversion of the anticancer prodrug irinotecan to SN-38 in plasma and tissues. TgCES1 mice exhibited enhanced metabolism of irinotecan to SN-38 in liver and kidney. Ces1 and hCES1 activity increased irinotecan toxicity, likely by enhancing the formation of pharmacodynamically active SN-38. Ces1 -/- mice also showed markedly increased capecitabine plasma exposure, which was moderately decreased in TgCES1 mice. Ces1 -/- mice were overweight with increased adipose tissue, white adipose tissue inflammation (in males), a higher lipid load in brown adipose tissue, and impaired blood glucose tolerance (in males). These phenotypes were mostly reversed in TgCES1 mice. TgCES1 mice displayed increased triglyceride secretion from liver to plasma, together with higher triglyceride levels in the male liver. These results indicate that the carboxylesterase 1 family plays essential roles in drug and lipid metabolism and detoxification. Ces1 -/- and TgCES1 mice will provide excellent tools for further study of the in vivo functions of Ces1/CES1 enzymes.

3.
Case Rep Ophthalmol Med ; 2021: 5822859, 2021.
Article in English | MEDLINE | ID: mdl-34211794

ABSTRACT

PURPOSE: To retrospectively describe the clinical characteristics, management, and outcomes of four cases of orbital solitary fibrous tumor (SFT). In one patient, we present an ultrasonic aspirator system for tumor removal. METHODS: Four patients with orbital SFT were selected: one patient with orbital SFT, another patient with frontal and ethmoidal SFT and orbital affectation with high rates of recurrence, the third patient with frontal lobe SFT and orbital invasion with multiple recurrences, and the fourth case with a history of craniopharyngioma surgery and SFT located on the orbital apex. RESULTS: All cases showed proptosis, eye movement restriction, and, in three cases, visual acuity alteration. Different treatments were applied: in three cases, excision was performed, one of them with an ultrasonic aspirator system, and in the remaining case, an exenteration was done (in two cases, radiosurgery treatment was also applied). The immunohistochemical study revealed SFT, similar to hemangiopericytomas (HPCs). No recurrence has been observed after surgical treatment. CONCLUSION: The SFT is a spectrum of different tumors with similar histopathological characteristics. The use of immunohistochemical markers is very helpful in the diagnosis. The main problem of orbital involvement is the risk of damaging important structures adjacent to the tumor during the surgical removal. The ultrasonic aspirator system allows elimination of the tumor without damaging other orbital structures.

4.
Rev. biol. trop ; 69(2)jun. 2021.
Article in English | LILACS, SaludCR | ID: biblio-1387655

ABSTRACT

Abstract Introduction: One of the significant threats to aquatic ecosystems is introducing non-native species in natural environments. This represents one of the principal causes of biodiversity loss in the world. Pangasianodon hypophthalmus is an introduced species in Colombia that shares life characteristics and habitat with endangered native species, such as Ageneiosus pardalis, Sorubim cuspicaudus, and Pseudoplatystoma magdaleniatum. However, its distribution is little-known, and scientists have barely explored the effects on the native fauna. Objectives: To evaluate the P. hypophthalmus invasive potential in some of the Colombian basins, which drain into the Caribbean Sea. Methods: Using records available in various databases, we performed a niche conservatism analysis between the native and introduced records of P. hypophthalmus using the R package Ecospat. Subsequently, we modeled the potential invasion area of P. hypophthalmus and the distribution areas of three native species, performing ecological niche modeling (ENM) using the Maxent algorithm. Finally, we calculated a geographic niche overlap between the non-native and native species. Results: The Ecospat spatial analysis indicated that P. hypophthalmus retains some environmental niche attributes through space. For this reason, we can use ENM as an approximation to its range of distribution in the invaded area. Our results using ENM demonstrated that the four species analyzed prefer low and slightly rocky regions; therefore, the geographical overlap of the three native species' ecological niches and the introduced species exceed 80 %. Conclusions: There are adequate conditions in the study basins to fully establish the species P. hypophthalmus, representing a high risk for aquatic ecosystems and native ichthyofauna. Knowledge of the potential distribution areas is essential to implement control of the species.


Resumen Introducción: Una de las amenazas importantes para los ecosistemas acuáticos es la introducción de las especies no nativas en ambientes naturales. Esto representa una de las principales causas de pérdida de biodiversidad en el mundo. Pangasianodon hypophthalmus es una especie introducida en Colombia que comparte características de vida y hábitat con especies nativas en peligro de extinción como: Ageneiosus pardalis, Sorubim cuspicaudus y Pseudoplatystoma magdaleniatum. Sin embargo, poco se conoce de su distribución y los efectos en la fauna nativa han sido poco explorados. Objetivo: Evaluar el potencial invasivo de P. hypophthalmus en algunas de las cuencas colombianas que desembocan en el Mar Caribe. Métodos: Utilizando registros disponibles en varias bases de datos, realizamos un análisis de conservadurismo de nicho entre los registros nativos e introducidos de P. hypophthalmus usando el paquete de R Ecospat. Posteriormente, modelamos el área potencial de invasión de P. hypophthalmus y las áreas de distribución de tres especies nativas realizando modelos de nicho ecológico (MNE) utilizando el algoritmo de Maxent. Finalmente, calculamos una superposición de nicho geográfico entre las especies nativas y no nativas. Resultados: El análisis espacial de Ecospat indica que P. hypophthalmus conserva algunos atributos del nicho ambiental a través del espacio. Por esta razón, podemos usar los MNE como una aproximación a su rango de distribución en el área invadida. Nuestros resultados usando MNE demostraron que las cuatro especies analizadas prefieren regiones bajas y ligeramente rocosas; por ello, la superposición geográfica de los nichos ecológicos de las tres especies nativas y la especie introducidas superan el 80 %. Conclusiones: Existen condiciones adecuadas en las cuencas de estudio para el establecimiento completo de la especie P. hypophthalmus, lo que representa un alto riesgo para los ecosistemas acuáticos y la ictiofauna nativa. El conocimiento de las áreas de distribución potencial es fundamental para implementar controles sobre la especie.


Subject(s)
Animals , Catfishes , Introduced Species , Fishes , Colombia
5.
Article in English | WPRIM (Western Pacific) | ID: wpr-918645

ABSTRACT

Objectives@#The aim of this study was to compare the rate of parasitism and intestinal parasitism profiles of children who live in relatively proximal communities across the 5 municipalities of the Barranquilla metropolitan area, Colombia. @*Methods@#In total, 986 fecal samples from children aged 1 to 10 were analyzed using a direct method (physiological saline and lugol) and the zinc sulfate flotation technique. A comparative analysis of the parasitism profiles between sampling locations (7 schools and 3 health centers providing growth and development services) was conducted using principal component analysis (PCA). The presence of Taenia solium antibodies was evaluated by the enzyme-linked immunosorbent assay method in 269 serum samples from the same group of children. @*Results@#The overall prevalence of intestinal parasitism was 57.6% (range, 42.1%–77.6%) across the sampling areas. The prevalence of helminthiasis was between 4.1% and 23.7%, and that of intestinal protozoa was between 38.2% and 73.5%. PCA showed that the parasite profiles of each sampling location shared no common characteristics. A total of 3.0% of the serum samples were positive for T. solium antibodies. @*Conclusion@#The intestinal parasitism profiles between relatively proximal sampling locations with similar geographic conditions were vastly different, indicating the need to study each small ecological niche on a localized scale to develop more cost-effective interventions for controlling intestinal parasitism.

6.
Endocrinology and Metabolism ; : 1055-1068, 2021.
Article in English | WPRIM (Western Pacific) | ID: wpr-914260

ABSTRACT

Background@#We studied whether musclin function in humans is related to glycemic control, body composition, and cardiorespiratory capacity. @*Methods@#A cross-sectional study was performed in sedentary adults with or without metabolic syndrome (MS). Serum musclin was measured by enzyme-linked immunosorbent assay. Insulin resistance (IR) was evaluated by the homeostatic model assessment (HOMA-IR). Body composition was determined by dual-energy X-ray absorptiometry and muscle composition by measuring carnosine in the thigh, a surrogate of fiber types, through proton magnetic resonance spectroscopy. Cardiorespiratory capacity was assessed through direct ergospirometry. @*Results@#The control (n=29) and MS (n=61) groups were comparable in age (51.5±6.5 years old vs. 50.7±6.1 years old), sex (72.4% vs. 70.5% women), total lean mass (58.5%±7.4% vs. 57.3%±6.8%), and peak oxygen consumption (VOpeak) (31.0±5.8 mL O2./kg.min vs. 29.2±6.3 mL O2/kg.min). Individuals with MS had higher body mass index (BMI) (30.6±4.0 kg/m2 vs. 27.4± 3.6 kg/m2), HOMA-IR (3.5 [95% confidence interval, CI, 2.9 to 4.6] vs. 1.7 [95% CI, 1.1 to 2.0]), and musclin (206.7 pg/mL [95% CI, 122.7 to 387.8] vs. 111.1 pg/mL [95% CI, 63.2 to 218.5]) values than controls (P˂0.05). Musclin showed a significant relationship with HOMA-IR (β=0.23; 95% CI, 0.12 to 0.33; P˂0.01), but not with VOpeak, in multiple linear regression models adjusted for age, sex, fat mass, lean mass, and physical activity. Musclin was significantly associated with insulin, glycemia, visceral fat, and regional muscle mass, but not with BMI, VCO2peak, maximum heart rate, maximum time of work, or carnosine. @*Conclusion@#In humans, musclin positively correlates with insulinemia, IR, and a body composition profile with high visceral adiposity and lean mass, but low body fat percentage. Musclin is not related to BMI or cardiorespiratory capacity.

8.
Mol Biol Rep ; 47(3): 2391-2396, 2020 Mar.
Article in English | MEDLINE | ID: mdl-32002795

ABSTRACT

Microsatellites were designed and characterized in the African fruit tree species Dacryodes edulis (Burseraceae). The fruits are commercialized throughout Central Africa and the species is present in forested environments as well as cultivated systems. The high variability of these markers makes them suitable to investigate the structure of genetic diversity in this important food tree species from Central Africa. From a genomic library obtained by next-generation sequencing, 21 new polymorphic microsatellite loci were developed. Tested on 95 individuals from four populations coming from three countries of the Congo Basin, the microsatellites displayed two to 20 alleles (mean 7.5; expected heterozygosity 0.003 to 0.937, mean 0.666). The transferability of microsatellites was effective for four other Dacryodes species (D. buettneri, D. igaganga, D. osika, D. pubescens). This set of newly developed microsatellite markers will be useful for assessing the genetic diversity and differentiation as well as gene flow patterns of D. edulis in tropical forests from Central Africa.


Subject(s)
Burseraceae/genetics , Fruit/genetics , Microsatellite Repeats , Africa, Central , Alleles , Burseraceae/classification , Crosses, Genetic , DNA, Plant , Trees
9.
Article in Chinese | WPRIM (Western Pacific) | ID: wpr-951228

ABSTRACT

Objective: To assess the temporal and geographical distribution of confirmed cases of cutaneous, mucocutaneous and visceral leishmaniasis in the Argentine Republic from 2013 to 2017. Methods: A retrospective study was carried out using data collected from the Integrated Surveillance Bulletin database of the National System of Health Surveillance. Confirmed cases of cutaneous, mucocutaneous and visceral leishmaniasis up to the 52nd epidemiological week of each year was included. Results: In the 5 years period, 1 295 confirmed leishmaniasis cases were reported in the Argentine Republic. One thousand twenty-eight (1 028) cases corresponded to cutaneous leishmaniasis (87.10%), being the most common type of leishmaniasis. Mucocutaneous leishmaniasis was in the second place in the country with 115 cases reported, mostly in the Northwest and Northeast regions. A total of 52 individuals with visceral leishmaniasis were identified and Misiones Province was the most affected. Conclusions: It is important to analyze the temporal and geographical distribution of leishmaniasis in order to provide an adequate management and surveillance.

10.
PLoS One ; 13(9): e0202976, 2018.
Article in English | MEDLINE | ID: mdl-30208069

ABSTRACT

The ability to determine the composition and relative frequencies of fish species in large ichthyoplankton swarms could have extremely important ecological applications However, this task is currently hampered by methodological limitations. We proposed a new method for Amazonian species based on hybridization capture of the COI gene DNA from a distant species (Danio rerio), absent from our study area (the Amazon basin). The COI sequence of this species is approximately equidistant from all COI of Amazonian species available. By using this sequence as probe we successfully facilitated the simultaneous identification of fish larvae belonging to the order Siluriformes and to the Characiformes represented in our ichthyoplankton samples. Species relative frequencies, estimated by the number of reads, showed almost perfect correlations with true frequencies estimated by a Sanger approach, allowing the development of a quantitative approach. We also proposed a further improvement to a previous protocol, which enables lowering the sequencing effort by 40 times. This new Metabarcoding by Capture using a Single Probe (MCSP) methodology could have important implications for ecology, fisheries management and conservation in fish biodiversity hotspots worldwide. Our approach could easily be extended to other plant and animal taxa.


Subject(s)
DNA Barcoding, Taxonomic/methods , Fishes/classification , Larva/genetics , Animals , Biodiversity , Databases, Genetic , Fishes/genetics , High-Throughput Nucleotide Sequencing
11.
Heredity (Edinb) ; 119(2): 88-94, 2017 Aug.
Article in English | MEDLINE | ID: mdl-28295033

ABSTRACT

Phenotypic changes in plants can be observed along many environmental gradients and are determined by both environmental and genetic factors. The identification of alleles associated with phenotypic variations is a rapidly developing area of research. We studied the genetic basis of phenotypic variations in 11 populations of wild pearl millet (Pennisetum glaucum) on two North-South aridity gradients, one in Niger and one in Mali. Most of the 11 phenotypic traits assessed in a common garden experiment varied between the populations studied. Moreover, the size of the inflorescence, the number of flowers and aboveground dry mass co-varied positively with a decrease in rainfall. To decipher the genetic basis of these phenotypes, we used an association mapping strategy with a mixed model. We found two SNPs on the same myosin XI contig significantly associated with variations in the average number of flowers. Both the allele frequency of the two SNPs and the average number of flowers co-varied with the rainfall gradient on the two gradients. Interestingly, this gene was also a target of selection during domestication. The Myosin XI gene is thus a good candidate for fitness-related adaptation in wild populations.


Subject(s)
Adaptation, Physiological/genetics , Genetic Fitness , Myosins/genetics , Pennisetum/genetics , Alleles , Climate , Gene Frequency , Genetic Association Studies , Genetics, Population , Genotype , Mali , Niger , Pennisetum/physiology , Phenotype , Plant Proteins/genetics , Polymorphism, Single Nucleotide , Rain , Water/physiology
12.
PLoS One ; 12(1): e0170009, 2017.
Article in English | MEDLINE | ID: mdl-28095487

ABSTRACT

Tropical rainforests harbor extraordinary biodiversity. The Amazon basin is thought to hold 30% of all river fish species in the world. Information about the ecology, reproduction, and recruitment of most species is still lacking, thus hampering fisheries management and successful conservation strategies. One of the key understudied issues in the study of population dynamics is recruitment. Fish larval ecology in tropical biomes is still in its infancy owing to identification difficulties. Molecular techniques are very promising tools for the identification of larvae at the species level. However, one of their limits is obtaining individual sequences with large samples of larvae. To facilitate this task, we developed a new method based on the massive parallel sequencing capability of next generation sequencing (NGS) coupled with hybridization capture. We focused on the mitochondrial marker cytochrome oxidase I (COI). The results obtained using the new method were compared with individual larval sequencing. We validated the ability of the method to identify Amazonian catfish larvae at the species level and to estimate the relative abundance of species in batches of larvae. Finally, we applied the method and provided evidence for strong temporal variation in reproductive activity of catfish species in the Ucayalí River in the Peruvian Amazon. This new time and cost effective method enables the acquisition of large datasets, paving the way for a finer understanding of reproductive dynamics and recruitment patterns of tropical fish species, with major implications for fisheries management and conservation.


Subject(s)
DNA Barcoding, Taxonomic/methods , Fishes/genetics , High-Throughput Nucleotide Sequencing/methods , Larva/genetics , Animals , Fishes/classification
13.
Article in English | WPRIM (Western Pacific) | ID: wpr-727975

ABSTRACT

Vascular reactivity can be influenced by the vascular region, animal age, and pathologies present. Prostaglandins (produced by COX-1 and COX-2) play an important role in the contractile response to phenylephrine in the abdominal aorta of young rats. Although these COXs are found in many tissues, their distribution and role in vascular reactivity are not clear. At a vascular level, they take part in the homeostasis functions involved in many physiological and pathologic processes (e.g., arterial pressure and inflammatory processes). The aim of this study was to analyze changes in the contractile response to phenylephrine of thoracic/abdominal aorta and the coronary artery during aging in rats. Three groups of rats were formed and sacrificed at three distinct ages: prepubescent, young and old adult. The results suggest that there is a higher participation of prostanoids in the contractile effect of phenylephrine in pre-pubescent rats, and a lower participation of the same in old rats. Contrarily, there seems to be a higher participation of prostanoids in the contractile response of the coronary artery of older than pre-pubescent rats. Considering that the changes in the expression of COX-2 were similar for the three age groups and the two tissues tested, and that expression of COX-1 is apparently greater in older rats, COX-1 and COX-2 may lose functionality in relation to their corresponding receptors during aging in rats.


Subject(s)
Adult , Animals , Humans , Rats , Aging , Aorta , Aorta, Abdominal , Arterial Pressure , Coronary Vessels , Heart , Homeostasis , Pathologic Processes , Pathology , Phenylephrine , Prostaglandin-Endoperoxide Synthases , Prostaglandins
14.
Mol Phylogenet Evol ; 105: 126-138, 2016 12.
Article in English | MEDLINE | ID: mdl-27521478

ABSTRACT

The tropical rain forests of Central Africa contain high levels of species diversity. Paleovegetation or biodiversity patterns suggested successive contraction/expansion phases on this rain forest cover during the last glacial maximum (LGM). Consequently, the hypothesis of the existence of refugia e.g. habitat stability that harbored populations during adverse climatic periods has been proposed. Understory species are tightly associated to forest cover and consequently are ideal markers of forest dynamics. Here, we used two central African rain forest understory species of the palm genus, Podococcus, to assess the role of past climate variation on their distribution and genetic diversity. Species distribution modeling in the present and at the LGM was used to estimate areas of climatic stability. Genetic diversity and phylogeography were estimated by sequencing near complete plastomes for over 120 individuals. Areas of climatic stability were mainly located in mountainous areas like the Monts de Cristal and Monts Doudou in Gabon, but also lowland coastal forests in southeast Cameroon and northeast Gabon. Genetic diversity analyses shows a clear North-South structure of genetic diversity within one species. This divide was estimated to have originated some 500,000years ago. We show that, in Central Africa, high and unique genetic diversity is strongly correlated with inferred areas of climatic stability since the LGM. Our results further highlight the importance of coastal lowland rain forests in Central Africa as harboring not only high species diversity but also important high levels of unique genetic diversity. In the context of strong human pressure on coastal land use and destruction, such unique diversity hotspots need to be considered in future conservation planning.


Subject(s)
Arecaceae/classification , Arecaceae/genetics , Genetic Variation , Phylogeography , Rainforest , Africa, Central , Genome, Plant , Haplotypes , Sample Size , Sequence Analysis, DNA , Time Factors
15.
Mol Ecol Resour ; 16(2): 434-45, 2016 03.
Article in English | MEDLINE | ID: mdl-26388536

ABSTRACT

Next-generation sequencing allows access to a large quantity of genomic data. In plants, several studies used whole chloroplast genome sequences for inferring phylogeography or phylogeny. Even though the chloroplast is a haploid organelle, NGS plastome data identified a nonnegligible number of intra-individual polymorphic SNPs. Such observations could have several causes such as sequencing errors, the presence of heteroplasmy or transfer of chloroplast sequences in the nuclear and mitochondrial genomes. The occurrence of allelic diversity has practical important impacts on the identification of diversity, the analysis of the chloroplast data and beyond that, significant evolutionary questions. In this study, we show that the observed intra-individual polymorphism of chloroplast sequence data is probably the result of plastid DNA transferred into the mitochondrial and/or the nuclear genomes. We further assess nine different bioinformatics pipelines' error rates for SNP and genotypes calling using SNPs identified in Sanger sequencing. Specific pipelines are adequate to deal with this issue, optimizing both specificity and sensitivity. Our results will allow a proper use of whole chloroplast NGS sequence and will allow a better handling of NGS chloroplast sequence diversity.


Subject(s)
Chloroplasts/genetics , DNA, Chloroplast/genetics , Genome, Chloroplast , Polymorphism, Genetic , Computational Biology , DNA, Chloroplast/chemistry , Genotype , High-Throughput Nucleotide Sequencing , Polymorphism, Single Nucleotide
16.
Ann Hepatol ; 14(1): 64-74, 2015.
Article in English | MEDLINE | ID: mdl-25536643

ABSTRACT

BACKGROUND AND AIM: Hepatocellular carcinoma (HCC) is the most common primary liver cancer diagnosed worldwide. Deregulation of Wnt/beta-catenin pathway has been associated with the development of HCC in a substantial number of cases in Europe and far less in Asia. Nothing is known about this pathway in HCC cases from South America. This study aimed to investigate the frequency of mutations in beta-catenin gene (CTNNB1) and the subcellular localization of beta-catenin in HCC cases from Colombia. MATERIAL AND METHODS: We determine by direct sequencing the frequency of mutations in exon 3 of CTNNB1 gene and by immunohistochemistry the subcellular localization of beta-catenin in 54 samples of HCC obtained from three pathology units in Bogota and Medellin cities. RESULTS: Only three HCC cases (5.6%) were found mutated at residues (G34E, S45P, P44S, T41I) important for phosphorylation and ubiquitination of beta-catenin protein. Strikingly, nuclear or cytoplasmic accumulation of beta-catenin, hallmark of Wnt pathway activation, was found in 42.6% HCC cases (23/54). Interestingly, beta-catenin accumulation was significantly more frequent in young patients and hepatitis B virus-related HCC. CONCLUSIONS: Although, CTNNB1 exon 3 mutations are not frequent in HCC from Colombian patients, our findings indicate that Wnt/beta-catenin signaling is activated in 42.6% of HCC samples. Furthermore, Wnt signaling was demonstrated in HCC cases associated of HBV infection, one of the most important HCC risk factors in Colombia.


Subject(s)
Carcinoma, Hepatocellular/genetics , Liver Neoplasms/genetics , Mutation , Wnt Signaling Pathway/genetics , beta Catenin/genetics , Age Factors , Aged , Aged, 80 and over , Carcinoma, Hepatocellular/etiology , Carcinoma, Hepatocellular/pathology , Cohort Studies , Colombia , Exons , Female , Hepatitis B, Chronic/complications , Humans , Immunohistochemistry , Liver Neoplasms/etiology , Liver Neoplasms/pathology , Male , Middle Aged , Neoplasm Grading , Retrospective Studies , beta Catenin/metabolism
18.
Article in English | WPRIM (Western Pacific) | ID: wpr-162202

ABSTRACT

Over the past decade, growing evidence has established the gut microbiota as one of the most important determinants of metabolic disorders such as obesity and type 2 diabetes. Indeed, obesogenic diet can drastically alter bacterial populations (i.e., dysbiosis) leading to activation of pro-inflammatory mechanisms and metabolic endotoxemia, therefore promoting insulin resistance and cardiometabolic disorders. To counteract these deleterious effects, probiotic strains have been developed with the aim of reshaping the microbiome to improve gut health. In this review, we focus on benefits of widely used probiotics describing their potential mechanisms of action, especially their ability to decrease metabolic endotoxemia by restoring the disrupted intestinal mucosal barrier. We also discuss the perspective of using new bacterial strains such as butyrate-producing bacteria and the mucolytic Akkermansia muciniphila, as well as the use of prebiotics to enhance the functionality of probiotics. Finally, this review introduces the notion of genetically engineered bacterial strains specifically developed to deliver anti-inflammatory molecules to the gut.


Subject(s)
Bacteria , Diet , Endotoxemia , Insulin Resistance , Microbiota , Obesity , Prebiotics , Probiotics
19.
Nutr J ; 13: 37, 2014 Apr 24.
Article in English | MEDLINE | ID: mdl-24761762

ABSTRACT

BACKGROUND: Examine the relation between consumption of low-fat vs. whole-fat dairy products with the carotid intima-media thickness and pulse wave velocity. METHODS: Cross-sectional and multi-center study. A total of 265 subjects were selected by stratified random sampling. MEASUREMENTS: Information about dairy products was assessed using a semi-quantitative food-frequency questionnaire. Carotid intima-media thickness (IMT) was measured by carotid ultrasonography. Pulse wave velocity (PWV) was measured using the SphygmoCor-System. RESULTS: Subjects (age 55.8 ± 12.2) had mean values of IMT 0.68 ± 0.10 mm and PWV 7.60 ± 2.0 m/sec. The relationship between PWV and IMT with whole-fat and low-fat dairy intake groups, adjusted for age, sex, energy intake and other confounders revealed lower values of PWV in subjects with a consumption higher than 125 g/day of low-fat dairy and in those who did not intake whole-fat dairy. In a risk-factor adjusted regression model, an increase in PWV of 0.109 m/sec (95% CI: 0.006 -0.213) was estimated for every 100 g/day increase in whole-fat dairy intake. Similarly, a decrease in PWV of 0.101 m/sec (95% CI: -0.178 -0.023) was estimated for every 100 g/day increase in low-fat dairy intake, (p = 0.038 and p = 0.011 respectively). While for every 100 g/day increase in low-fat dairy intake, the estimate decrease of IMT was 0.005 mm (95% CI: -0.010 -0.001), p = 0.011. CONCLUSIONS: PWV and IMT showed an inverse association with the intake of low-fat dairy and a positive association with the intake of whole-fat dairy, so the amount of fat in dairy products can play an important role in arterial stiffness and subclinical atherosclerosis.


Subject(s)
Carotid Intima-Media Thickness , Dairy Products/analysis , Diet, Fat-Restricted , Pulse Wave Analysis , Adult , Aged , Arteriosclerosis/etiology , Cross-Sectional Studies , Female , Humans , Male , Middle Aged , Risk Factors
20.
Article in English | WPRIM (Western Pacific) | ID: wpr-16237

ABSTRACT

Endometrial cancer is a common gynecologic malignancy typically diagnosed at early stage and cured with surgery alone. Adjuvant therapy is tailored according to the risk of recurrence, estimated based on the International Federation of Gynecology and Obstetrics (FIGO) stage and other histological factors. The objective of this manuscript is to review the evidence guiding adjuvant therapy for early stage and locally advanced uterine cancer. For patients with early stage disease, minimizing toxicity, while preserving outstanding cure rates remains the major goal. For patients with locally advanced endometrial cancer optimal combined regimens are being defined. Risk stratification based on molecular traits is under development and may aid refine the current risk prediction model and permit personalized approaches for women with endometrial cancer.


Subject(s)
Female , Humans , Endometrial Neoplasms , Gynecology , Obstetrics , Recurrence , Uterine Neoplasms
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