Predicted genetic burden and frequency of phenotype-associated variants in the horse.

Disease-causing variants have been identified for less than 20% of suspected equine genetic diseases. Whole genome sequencing (WGS) allows rapid identification of rare disease causal variants. However, interpreting the clinical variant consequence is confounded by the number of predicted deleterious variants that healthy individuals carry (predicted genetic burden). Estimation of the predicted genetic burden and baseline frequencies of known deleterious or phenotype associated variants within and across the major horse breeds have not been performed. We used WGS of 605 horses across 48 breeds to identify 32,818,945 variants, demonstrate a high predicted genetic burden (median 730 variants/horse, interquartile range: 613-829), show breed differences in predicted genetic burden across 12 target breeds, and estimate the high frequencies of some previously reported disease variants. This large-scale variant catalog for a major and highly athletic domestic animal species will enhance its ability to serve as a model for human phenotypes and improves our ability to discover the bases for important equine phenotypes.

Trypanosomatid prevalence and host habitat choice in woodland Drosophila.

Although trypanosomatids (Trypanosomatidae: Kinetoplastida) are common inhabitants of dipteran guts, prevalence in natural fly populations has not been studied. We investigated factors associated with trypanosomatid prevalence in eight species of woodland Drosophila (Drosophilidae: Diptera) collected from five sites in southwest Ohio. We collected infected flies from every site, over both years of our study, and from every Drosophila species. Prevalence differed with host species, but not between sites or with host sex. Prevalence was highest in the most abundant species, members of the subgenus Sophophora, species using decaying fruit as breeding sites, and those able to use more than one type of substrate for oviposition.