Inferring functional traits in a deep-sea wood-boring bivalve using dynamic energy budget theory.

For species in the deep sea, there is a knowledge gap related to their functional traits at all stages of their life cycles. Dynamic energy budget (DEB) theory has been proven to be an efficient framework for estimating functional traits throughout a life cycle using simulation modelling. An abj-DEB model, which compared with the standard DEB model includes an extra juvenile stage between the embryo and the usual juvenile stages, has been successfully implemented for the deep-sea Atlantic woodeater Xylonora atlantica. Most of the core and primary parameter values of the model were in the range of those found for shallow marine bivalve species; however, in comparison to shallow marine bivalves, X. atlantica required less energy conductance and energy to reach the puberty stage for the same range of body sizes, and its maximum reserve capacity was higher. Consequently, its size at first reproduction was small, and better survival under starvation conditions was expected. A series of functional traits were simulated according to different scenarios of food density and temperature. The results showed a weak cumulative number of oocytes, a low growth rate and a small maximum body size but an extended pelagic larval duration under deep-sea environmental conditions. Moreover, DEB modelling helped explain that some male X. atlantica individuals remain dwarfs while still reproducing by changing their energy allocation during their ontogenetic development in favour of reproduction. The estimation of functional traits using DEB modelling will be useful in further deep-sea studies on the connectivity and resilience of populations.

Calibration of parameters in Dynamic Energy Budget models using Direct-Search methods.

Dynamic Energy Budget (DEB) theory aims to capture the quantitative aspects of metabolism at the individual level, for all species. The parametrization of a DEB model is based on information obtained through the observation of natural populations and experimental research. Currently the DEB toolbox estimates these parameters using the Nelder-Mead Simplex method, a derivative-free direct-search method. However, this procedure presents some limitations regarding convergence and how to address constraints. Framed in the calibration of parameters in DEB theory, this work presents a numerical comparison between the Nelder-Mead Simplex method and the SID-PSM algorithm, a Directional Direct-Search method for which convergence can be established both for unconstrained and constrained problems. A hybrid version of the two methods, named as Simplex Directional Direct-Search, provides a robust and efficient algorithm, able to solve the constrained optimization problems resulting from the parametrization of the biological models.

Isolation and characterization of 25 microsatellite DNA loci for Anopheles albitarsis sensu lato and inter-specific amplification in 5 congeneric species.

The Anopheles albitasis complex includes 6 species, and 3 are considered as malaria vectors in Brazil. Twenty-five polymorphic microsatellite DNA loci were isolated and characterized in 24-36 individuals from the neighborhood of Puraquequara, Manaus, Amazonas State, Brazil. The number of estimated alleles ranged from 2 to 10, the observed heterozygosity ranged from 0.182 to 0.897, and the expected heterozygosity ranged from 0.260 to 0.854. Eleven loci showed significant deviation from Hardy-Weinberg equilibrium. Eleven loci were cross-amplified successfully in 5 Anopheles species. These microsatellite loci will be useful in studies investigating population structure and evolutionary genetics in A. albitarsis sensu lato and other A. albitarsis complex species.

Improved renal function after kidney transplantation is associated with heme oxygenase-1 polymorphism.

Heme oxygenase-1 (HO-1) has a microsatellite polymorphism based on the number of guanosine-thymidine nucleotide repeats (GT) repeats that regulates expression levels and could have an impact on organ survival post-injury. We correlated HO-1 polymorphism with renal graft function. The HO-1 gene was sequenced (N = 181), and the allelic repeats were divided into subclasses: short repeats (S) (<27 repeats) and long repeats (L) (>/=27 repeats). A total of 47.5% of the donors carried the S allele. The allograft function was statistically improved six months, two and three yr after transplantation in patients receiving kidneys from donors with an S allele. For the recipients carrying the S allele (50.3%), the allograft function was also better throughout the follow-up, but reached statistical significance only three yr after transplantation (p = 0.04). Considering only those patients who had chronic allograft nephropathy (CAN; 74 of 181), allograft function was also better in donors and in recipients carrying the S allele, two and three yr after transplantation (p = 0.03). Recipients of kidney transplantation from donors carrying the S allele presented better function even in the presence of CAN.