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1.
Phys Rev E ; 109(5-2): 055302, 2024 May.
Article in English | MEDLINE | ID: mdl-38907467

ABSTRACT

The very existence of a phase transition for spin glasses in an external magnetic field is controversial, even in high dimensions. We carry out massive simulations of the Ising spin-glass in a field, in six dimensions (which, according to classical-but not generally accepted-field-theoretical studies, is the upper critical dimension). We obtain results compatible with a second-order phase transition and estimate its critical exponents for the simulated lattice sizes. The detailed analysis performed by other authors of the replica symmetric Hamiltonian, under the hypothesis of critical behavior, predicts that the ratio of the renormalized coupling constants remain bounded as the correlation length grows. Our numerical results are in agreement with this expectation.

2.
Phys Rev E ; 109(1-1): 014133, 2024 Jan.
Article in English | MEDLINE | ID: mdl-38366408

ABSTRACT

Genome assembly, the process of reconstructing a long genetic sequence by aligning and merging short fragments, or reads, is known to be NP-hard, either as a version of the shortest common superstring problem or in a Hamiltonian-cycle formulation. That is, the computing time is believed to grow exponentially with the problem size in the worst case. Despite this fact, high-throughput technologies and modern algorithms currently allow bioinformaticians to handle datasets of billions of reads. Using methods from statistical mechanics, we address this conundrum by demonstrating the existence of a phase transition in the computational complexity of the problem and showing that practical instances always fall in the "easy" phase (solvable by polynomial-time algorithms). In addition, we propose a Markov-chain Monte Carlo method that outperforms common deterministic algorithms in the hard regime.

4.
Phys Rev E ; 105(5-1): 054106, 2022 May.
Article in English | MEDLINE | ID: mdl-35706223

ABSTRACT

A growing body of evidence indicates that the sluggish low-temperature dynamics of glass formers (e.g., supercooled liquids, colloids, or spin glasses) is due to a growing correlation length. Which is the effective field theory that describes these correlations? The natural field theory was drastically simplified by Bray and Roberts in 1980. More than 40 years later, we confirm the tenets of Bray and Roberts's theory by studying the Ising spin glass in an externally applied magnetic field, both in four spatial dimensions (data obtained from the Janus collaboration) and on the Bethe lattice.

5.
Phys Rev Lett ; 125(23): 237202, 2020 Dec 04.
Article in English | MEDLINE | ID: mdl-33337211

ABSTRACT

The correlation length ξ, a key quantity in glassy dynamics, can now be precisely measured for spin glasses both in experiments and in simulations. However, known analysis methods lead to discrepancies either for large external fields or close to the glass temperature. We solve this problem by introducing a scaling law that takes into account both the magnetic field and the time-dependent spin-glass correlation length. The scaling law is successfully tested against experimental measurements in a CuMn single crystal and against large-scale simulations on the Janus II dedicated computer.

6.
Phys Rev E ; 100(5-1): 050102, 2019 Nov.
Article in English | MEDLINE | ID: mdl-31869906

ABSTRACT

We explore the capacity of neural networks to detect a symmetry with complex local and non-local patterns: the gauge symmetry Z_{2}. This symmetry is present in physical problems from topological transitions to quantum chromodynamics, and controls the computational hardness of instances of spin-glasses. Here, we show how to design a neural network, and a dataset, able to learn this symmetry and to find compressed latent representations of the gauge orbits. Our method pays special attention to system-wrapping loops, the so-called Polyakov loops, known to be particularly relevant for computational complexity.

7.
Phys Rev Lett ; 120(26): 267203, 2018 Jun 29.
Article in English | MEDLINE | ID: mdl-30004737

ABSTRACT

Experiments on spin glasses can now make precise measurements of the exponent z(T) governing the growth of glassy domains, while our computational capabilities allow us to make quantitative predictions for experimental scales. However, experimental and numerical values for z(T) have differed. We use new simulations on the Janus II computer to resolve this discrepancy, finding a time-dependent z(T,t_{w}), which leads to the experimental value through mild extrapolations. Furthermore, theoretical insight is gained by studying a crossover between the T=T_{c} and T=0 fixed points.

8.
Phys Rev Lett ; 119(3): 037203, 2017 Jul 21.
Article in English | MEDLINE | ID: mdl-28777596

ABSTRACT

Chaotic size dependence makes it extremely difficult to take the thermodynamic limit in disordered systems. Instead, the metastate, which is a distribution over thermodynamic states, might have a smooth limit. So far, studies of the metastate have been mostly mathematical. We present a numerical construction of the metastate for the d=3 Ising spin glass. We work in equilibrium, below the critical temperature. Leveraging recent rigorous results, our numerical analysis gives evidence for a dispersed metastate, supported on many thermodynamic states.

9.
Phys Rev Lett ; 118(15): 157202, 2017 Apr 14.
Article in English | MEDLINE | ID: mdl-28452502

ABSTRACT

We first reproduce on the Janus and Janus II computers a milestone experiment that measures the spin-glass coherence length through the lowering of free-energy barriers induced by the Zeeman effect. Secondly, we determine the scaling behavior that allows a quantitative analysis of a new experiment reported in the companion Letter [S. Guchhait and R. Orbach, Phys. Rev. Lett. 118, 157203 (2017)].PRLTAO0031-900710.1103/PhysRevLett.118.157203 The value of the coherence length estimated through the analysis of microscopic correlation functions turns out to be quantitatively consistent with its measurement through macroscopic response functions. Further, nonlinear susceptibilities, recently measured in glass-forming liquids, scale as powers of the same microscopic length.

10.
Phys Rev Lett ; 115(26): 267205, 2015 Dec 31.
Article in English | MEDLINE | ID: mdl-26765021

ABSTRACT

In the three-dimensional Heisenberg spin glass in a random field, we study the properties of the inherent structures that are obtained by an instantaneous cooling from infinite temperature. For a not too large field the density of states g(ω) develops localized soft plastic modes and reaches zero as ω(4) (for large fields a gap appears). When we perturb the system adding a force along the softest mode, one reaches very similar minima of the energy, separated by small barriers, that appear to be good candidates for classical two-level systems.


Subject(s)
Glass/chemistry , Models, Chemical
11.
Article in English | MEDLINE | ID: mdl-24730822

ABSTRACT

We study the off-equilibrium dynamics of the three-dimensional Ising spin glass in the presence of an external magnetic field. We have performed simulations both at fixed temperature and with an annealing protocol. Thanks to the Janus special-purpose computer, based on field-programmable gate array (FPGAs), we have been able to reach times equivalent to 0.01 s in experiments. We have studied the system relaxation both for high and for low temperatures, clearly identifying a dynamical transition point. This dynamical temperature is strictly positive and depends on the external applied magnetic field. We discuss different possibilities for the underlying physics, which include a thermodynamical spin-glass transition, a mode-coupling crossover, or an interpretation reminiscent of the random first-order picture of structural glasses.

13.
Phys Rev Lett ; 108(16): 165701, 2012 Apr 20.
Article in English | MEDLINE | ID: mdl-22680734

ABSTRACT

We present a tethered Monte Carlo simulation of the crystallization of hard spheres. Our method boosts the traditional umbrella sampling to the point of making practical the study of constrained Gibbs' free energies depending on several crystalline order parameters. We obtain high-accuracy estimates of the fluid-crystal coexistence pressure for up to 2916 particles (enough to accommodate fluid-solid interfaces). We are able to extrapolate to infinite volume the coexistence pressure [p(co)=11.5727(10)k(B)T/σ(3)] and the interfacial free energy [γ({100})=0.636(11)k(B)T/σ(2)].

14.
Phys Rev E Stat Nonlin Soft Matter Phys ; 82(2 Pt 1): 021501, 2010 Aug.
Article in English | MEDLINE | ID: mdl-20866812

ABSTRACT

We study a polydisperse soft-spheres model for colloids by means of microcanonical Monte Carlo simulations. We consider a polydispersity as high as 24%. Although solidification occurs, neither a crystal nor an amorphous state are thermodynamically stable. A finite size scaling analysis reveals that in the thermodynamic limit: (a) the fluid-solid transition is rather a crystal-amorphous phase-separation, (b) such phase-separation is preceded by the dynamic glass transition, and (c) small and big particles arrange themselves in the two phases according to a complex pattern not predicted by any fractionation scenario.


Subject(s)
Chemical Fractionation/methods , Colloids/chemistry , Colloids/isolation & purification , Models, Chemical , Computer Simulation
15.
Phys Rev Lett ; 105(17): 177202, 2010 Oct 22.
Article in English | MEDLINE | ID: mdl-21231075

ABSTRACT

We numerically study the aging properties of the dynamical heterogeneities in the Ising spin glass. We find that a phase transition takes place during the aging process. Statics-dynamics correspondence implies that systems of finite size in equilibrium have static heterogeneities that obey finite-size scaling, thus signaling an analogous phase transition in the thermodynamical limit. We compute the critical exponents and the transition point in the equilibrium setting, and use them to show that aging in dynamic heterogeneities can be described by a finite-time scaling ansatz, with potential implications for experimental work.

16.
Phys Rev E Stat Nonlin Soft Matter Phys ; 80(1 Pt 2): 015701, 2009 Jul.
Article in English | MEDLINE | ID: mdl-19658766

ABSTRACT

We propose a cluster simulation algorithm for statistical ensembles with fixed order parameter. We use the tethered ensemble, which features Helmholtz's effective potential rather than Gibbs's free energy and in which canonical averages are recovered with arbitrary accuracy. For the D=2,3 Ising model our method's critical slowing down is comparable to that of canonical cluster algorithms. Yet, we can do more than merely reproduce canonical values. As an example, we obtain a competitive value for the 3D Ising anomalous dimension from the maxima of the effective potential.

17.
Phys Rev E Stat Nonlin Soft Matter Phys ; 79(5 Pt 1): 051109, 2009 May.
Article in English | MEDLINE | ID: mdl-19518418

ABSTRACT

In the Monte Carlo simulation of both lattice field theories and of models of statistical mechanics, identities verified by exact mean values, such as Schwinger-Dyson equations, Guerra relations, Callen identities, etc., provide well-known and sensitive tests of thermalization bias as well as checks of pseudo-random-number generators. We point out that they can be further exploited as control variates to reduce statistical errors. The strategy is general, very simple, and almost costless in CPU time. The method is demonstrated in the two-dimensional Ising model at criticality, where the CPU gain factor lies between 2 and 4.

18.
Phys Rev E Stat Nonlin Soft Matter Phys ; 80(5 Pt 1): 051105, 2009 Nov.
Article in English | MEDLINE | ID: mdl-20364945

ABSTRACT

A microcanonical finite-size ansatz in terms of quantities measurable in a finite lattice allows extending phenomenological renormalization (the so-called quotients method) to the microcanonical ensemble. The ansatz is tested numerically in two models where the canonical specific heat diverges at criticality, thus implying Fisher renormalization of the critical exponents: the three-dimensional ferromagnetic Ising model and the two-dimensional four-state Potts model (where large logarithmic corrections are known to occur in the canonical ensemble). A recently proposed microcanonical cluster method allows simulating systems as large as L=1024 (Potts) or L=128 (Ising). The quotients method provides accurate determinations of the anomalous dimension, eta, and of the (Fisher-renormalized) thermal nu exponent. While in the Ising model the numerical agreement with our theoretical expectations is very good, in the Potts case, we need to carefully incorporate logarithmic corrections to the microcanonical ansatz in order to rationalize our data.


Subject(s)
Models, Chemical , Computer Simulation , Energy Transfer , Thermal Conductivity
19.
Phys Rev Lett ; 101(15): 157201, 2008 Oct 10.
Article in English | MEDLINE | ID: mdl-18999632

ABSTRACT

We study numerically the nonequilibrium dynamics of the Ising spin glass, for a time spanning 11 orders of magnitude, thus approaching the experimentally relevant scale (i.e., seconds). We introduce novel analysis techniques to compute the coherence length in a model-independent way. We present strong evidence for a replicon correlator and for overlap equivalence. The emerging picture is compatible with noncoarsening behavior.


Subject(s)
Glass/chemistry , Models, Chemical , Kinetics
20.
Phys Rev Lett ; 100(5): 057201, 2008 Feb 08.
Article in English | MEDLINE | ID: mdl-18352417

ABSTRACT

We present the first detailed numerical study in three dimensions of a first-order phase transition that remains first order in the presence of quenched disorder (specifically, the ferromagnetic-paramagnetic transition of the site-diluted four states Potts model). A tricritical point, which lies surprisingly near the pure-system limit and is studied by means of finite-size scaling, separates the first-order and second-order parts of the critical line. This investigation has been made possible by a new definition of the disorder average that avoids the diverging-variance probability distributions that plague the standard approach. Entropy, rather than free energy, is the basic object in this approach that exploits a recently introduced microcanonical Monte Carlo method.

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