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1.
Environ Monit Assess ; 196(8): 716, 2024 Jul 09.
Article in English | MEDLINE | ID: mdl-38980517

ABSTRACT

Low-cost sensors integrated with the Internet of Things can enable real-time environmental monitoring networks and provide valuable water quality information to the public. However, the accuracy and precision of the values measured by the sensors are critical for widespread adoption. In this study, 19 different low-cost sensors, commonly found in the literature, from four different manufacturers are tested for measuring five water quality parameters: pH, dissolved oxygen, oxidation-reduction potential, turbidity, and temperature. The low-cost sensors are evaluated for each parameter by calculating the error and precision compared to a typical multiparameter probe assumed as a reference. The comparison was performed in a controlled environment with simultaneous measurements of real water samples. The relative error ranged from - 0.33 to 33.77%, and most of them were ≤ 5%. The pH and temperature were the ones with the most accurate results. In conclusion, low-cost sensors are a complementary alternative to quickly detect changes in water quality parameters. Further studies are necessary to establish a guideline for the operation and maintenance of low-cost sensors.


Subject(s)
Environmental Monitoring , Water Quality , Environmental Monitoring/methods , Environmental Monitoring/instrumentation , Hydrogen-Ion Concentration , Temperature , Water Pollutants, Chemical/analysis , Oxygen/analysis
2.
Nat Commun ; 15(1): 2246, 2024 Mar 12.
Article in English | MEDLINE | ID: mdl-38472236

ABSTRACT

Understanding the molecular and cellular processes involved in lung epithelial regeneration may fuel the development of therapeutic approaches for lung diseases. We combine mouse models allowing diphtheria toxin-mediated damage of specific epithelial cell types and parallel GFP-labeling of functionally dividing cells with single-cell transcriptomics to characterize the regeneration of the distal lung. We uncover cell types, including Krt13+ basal and Krt15+ club cells, detect an intermediate cell state between basal and goblet cells, reveal goblet cells as actively dividing progenitor cells, and provide evidence that adventitial fibroblasts act as supporting cells in epithelial regeneration. We also show that diphtheria toxin-expressing cells can persist in the lung, express specific inflammatory factors, and transcriptionally resemble a previously undescribed population in the lungs of COVID-19 patients. Our study provides a comprehensive single-cell atlas of the distal lung that characterizes early transcriptional and cellular responses to concise epithelial injury, encompassing proliferation, differentiation, and cell-to-cell interactions.


Subject(s)
Diphtheria Toxin , Lung , Mice , Animals , Humans , Diphtheria Toxin/metabolism , Lung/metabolism , Cell Differentiation , Gene Expression Profiling , Cell Division
3.
Haematologica ; 2023 Dec 07.
Article in English | MEDLINE | ID: mdl-38058200

ABSTRACT

CASZ1 is a conserved transcription factor involved in neural development, blood vessel assembly and heart morphogenesis. CASZ1 has been implicated in cancer, either suppressing or promoting tumor development depending on the tissue. However, the impact of CASZ1 on hematological tumors remains unknown. Here, we show that the T-cell oncogenic transcription factor TAL1 is a direct positive regulator of CASZ1, that T-cell acute lymphoblastic leukemia (T-ALL) samples at diagnosis overexpress CASZ1b isoform, and that CASZ1b expression in patient samples correlates with PI3KAKT- mTOR signaling pathway activation. In agreement, overexpression of CASZ1b in both Ba/F3 and T-ALL cells leads to the activation of PI3K signaling pathway, which is required for CASZ1b-mediated transformation of Ba/F3 cells in vitro and malignant expansion in vivo. We further demonstrate that CASZ1b cooperates with activated NOTCH1 to promote T-ALL development in zebrafish, and that CASZ1b protects human T-ALL cells from serum deprivation and treatment with chemotherapeutic drugs. Taken together, our studies indicate that CASZ1b is a TAL1-regulated gene that promotes T-ALL development and resistance to chemotherapy.

5.
Cells Dev ; 174: 203847, 2023 06.
Article in English | MEDLINE | ID: mdl-37146757

ABSTRACT

The respiratory system is a vital component of our body, essential for both oxygen uptake and immune defense. Knowledge of cellular composition and function in different parts of the respiratory tract provides the basis for a better understanding of the pathological processes involved in various diseases such as chronic respiratory diseases and cancer. Single-cell RNA sequencing (scRNA-seq) is a proficient approach for the identification and transcriptional characterization of cellular phenotypes. Although the mouse is an essential tool for the study of lung development, regeneration, and disease, a scRNA-seq mouse atlas of the lung in which all epithelial cell types are included and annotated systematically is lacking. Here, we established a single-cell transcriptome landscape of the mouse lower respiratory tract by performing a meta-analysis of seven different studies in which mouse lungs and trachea were analyzed by droplet and/or plate-based scRNA-seq technologies. We provide information on the best markers for each epithelial cell type, propose surface markers for the isolation of viable cells, harmonized the annotation of cell types, and compare the mouse single-cell transcriptomes with human scRNA-seq data of the lung.


Subject(s)
Gene Expression Profiling , High-Throughput Nucleotide Sequencing , Animals , Mice , Humans , Sequence Analysis, RNA , Transcriptome/genetics , Epithelial Cells/metabolism
6.
Sensors (Basel) ; 23(9)2023 Apr 30.
Article in English | MEDLINE | ID: mdl-37177633

ABSTRACT

In many countries, water quality monitoring is limited due to the high cost of logistics and professional equipment such as multiparametric probes. However, low-cost sensors integrated with the Internet of Things can enable real-time environmental monitoring networks, providing valuable water quality information to the public. To facilitate the widespread adoption of these sensors, it is crucial to identify which sensors can accurately measure key water quality parameters, their manufacturers, and their reliability in different environments. Although there is an increasing body of work utilizing low-cost water quality sensors, many questions remain unanswered. To address this issue, a systematic literature review was conducted to determine which low-cost sensors are being used for remote water quality monitoring. The results show that there are three primary vendors for the sensors used in the selected papers. Most sensors range in price from US$6.9 to US$169.00 but can cost up to US$500.00. While many papers suggest that low-cost sensors are suitable for water quality monitoring, few compare low-cost sensors to reference devices. Therefore, further research is necessary to determine the reliability and accuracy of low-cost sensors compared to professional devices.

7.
Environ Technol ; 44(5): 686-694, 2023 Feb.
Article in English | MEDLINE | ID: mdl-34524952

ABSTRACT

Due to the recent coronavirus-2019 pandemic, several studies have emerged looking for new materials, especially with biocidal characteristics. Thus, the present research investigates the antibacterial properties of biodegradable cellulose acetate (CA) / cetylpyridinium bromide (CPB) electrospun nanofibers, their aerosol filtration, and the possible use as a filter media of surgical face masks. Then, samples of these nanofibers were produced over a nonwoven substrate, using different volumes of polymeric solution during the electrospinning process. The evaluation of the antibacterial properties of the nanofibers was performed for Escherichia coli and Staphylococcus aureus using quantitative methods. The aerosol filtration performance was evaluated in these samples for NaCl nanoparticles (from 7-300 nm) and with 8 mL min-1 of air flow rate. The results show that the single use of the surfactant has antibacterial properties from a concentration of 39 µg mL-1 of solution. The nanofibers presented a reduction of 100% for both bacteria. Air filtration tests showed 126.03 and 207.73 Pa cm-² of pressure drops and 63 and 77% of aerosol filtration efficiency (FE) for samples with 0.13 and 0.15 mL, respectively. Regarding the nanofiber produced with 0.35 mL, the value obtained was 115.13 ± 33.64 Pa cm-2 and 3.15% of particle penetration. These breathability values are higher than those required for the surgical face mask standard, indicating that improvements in the porosity and thickness are necessary to meet the Brazilian requirements. However, the nanofibers could be applied as filter media for indoor air conditioning systems due to their FE and biocidal properties.


Subject(s)
Air Filters , Nanofibers , Nanofibers/chemistry , Masks , Filtration/methods , Anti-Bacterial Agents , Aerosols , Escherichia coli
8.
Environ Geochem Health ; 45(5): 1841-1860, 2023 May.
Article in English | MEDLINE | ID: mdl-35713838

ABSTRACT

The global burden of disease estimated that approximately 7.1 million deaths worldwide were related to air pollution in 2016. However, only a limited number of small- and middle-sized cities have air quality monitoring networks. To date, air quality in terms of particulate matter is still mainly focused on mass concentration, with limited compositional monitoring even in mega cities, despite evidence indicating differential toxicity of particulate matter. As this evidence is far from conclusive, we conducted PM2.5 bioaccessibility studies of potentially harmful elements in a medium-sized city, Londrina, Brazil. The data was interpreted in terms of source apportionment, the health risk evaluation and the bioaccessibility of inorganic contents in an artificial lysosomal fluid. The daily average concentration of PM2.5 was below the WHO guideline, however, the chemical health assessment indicated a considerable health risk. The in vitro evaluation showed different potential mobility when compared to previous studies in large-sized cities, those with 1 million inhabitants or more (Curitiba and Manaus). The new WHO guideline for PM2.5 mass concentration puts additional pressure on cities where air pollution monitoring is limited and/or neglected, because decision making is mainly revenue-driven and not socioeconomic-driven. Given the further emerging evidence that PM chemical composition is as, or even more, important than mass concentration levels, the research reported in the paper could pave the way for the necessary inter- and intra-city collaborations that are needed to address this global health challenge.


Subject(s)
Air Pollutants , Air Pollution , Air Pollutants/analysis , Cities , Air Pollution/analysis , Particulate Matter/analysis , World Health Organization , Environmental Monitoring
9.
Article in English | MEDLINE | ID: mdl-36554402

ABSTRACT

The gradual increase in temperatures and changes in relative humidity, added to the aging and socioeconomic conditions of the population, may represent problems for public health, given that future projections predict even more noticeable changes in the climate and the age pyramid, which require analyses at an appropriate spatial scale. To our knowledge, an analysis of the synergic effects of several climatic and socioeconomic conditions on hospital admissions and deaths by cardiorespiratory and mental disorders has not yet been performed in Brazil. Statistical analyses were performed using public time series (1996-2015) of daily health and meteorological data from 16 metropolitan regions (in a subtropical climate zone in South America). Health data were stratified into six groups according to gender and age ranges (40-59; 60-79; and ≥80 years old) for each region. For the regression analysis, two distributions (Poisson and binomial negative) were tested with and without zero adjustments for the complete series and percentiles. Finally, the relative risks were calculated, and the effects based on exposure-response curves were evaluated and compared among regions. The negative binomial distribution fit the data best. High temperatures and low relative humidity were the most relevant risk factors for hospitalizations for cardiovascular diseases (lag = 0), while minimum temperatures were important for respiratory diseases (lag = 2 or 3 days). Temperature extremes, both high and low, were the most important risk factors for mental illnesses at lag 0. Groups with people over 60 years old presented higher risks for cardiovascular and respiratory diseases, while this was observed for the adult group (40-59 years old) in relation to mental disorders. In general, no major differences were found in the results between men and women. However, regions with higher urbanization levels presented risks, mainly for respiratory diseases, while the same was observed for cardiovascular diseases for regions with lower levels of urbanization. The Municipal Human Development Index is an important factor for the occurrence of diseases and deaths for all regions, depending on the evaluated group, representing high risks for health outcomes (the value for hospitalization for cardiovascular diseases was 1.6713 for the female adult group in the metropolitan region Palmas, and the value for hospitalization for respiratory diseases was 1.7274 for the female adult group in the metropolitan region Campo Mourão). In general, less developed regions have less access to adequate health care and better living conditions.


Subject(s)
Air Pollution , Cardiovascular Diseases , Respiration Disorders , Respiratory Tract Diseases , Adult , Male , Humans , Female , Aged, 80 and over , Middle Aged , Air Pollution/analysis , Cardiovascular Diseases/epidemiology , Respiratory Tract Diseases/epidemiology , Hospitalization , Socioeconomic Factors , Brazil/epidemiology
10.
Front Immunol ; 13: 834033, 2022.
Article in English | MEDLINE | ID: mdl-35222424

ABSTRACT

Commitment to the CD4+ or CD8+ T cell lineages is linked to the acquisition of a functional program broadly defined by helper and cytotoxic properties, respectively. The mechanisms underlying these processes in the human thymus remain largely unclear. Moreover, recent thymic emigrants are thought to have some degree of plasticity, which may be important for the shaping of the immune system and adjustment to specific peripheral needs. We show here that IL-4 induces proliferation-independent de novo synthesis of CD8αß in human CD4 single-positive (SP) thymocytes, generating a stable CD8SP population that features a diverse TCRαß repertoire, CD4 expression shut-down and ThPOK downregulation. IL-4 also promotes an innate-like program in both CD4SP and CD8SP thymocytes, characterized by Eomes upregulation in the absence of T-bet, in line with its recognized role in the generation of thymic innate-like CD8+ T cells. The clinical relevance of these findings is further supported by the profile of IL-4 production and IL-4 receptor expression that we identified in the human thymus. Importantly, human cord blood CD4+ T cells preserve the ability to generate Eomes+ CD8+ T cells in the presence of IL-4, with implications in neonatal immunity. Our results support a role for IL-4 in the dynamic regulation of human thymocyte plasticity and identify novel strategies to modulate immune responses.


Subject(s)
CD4-Positive T-Lymphocytes , Interleukin-4 , CD8-Positive T-Lymphocytes , Cell Differentiation , Fetal Blood/metabolism , Humans , Infant, Newborn , Interleukin-4/metabolism
11.
Environ Sci Pollut Res Int ; 29(4): 5840-5851, 2022 Jan.
Article in English | MEDLINE | ID: mdl-34431047

ABSTRACT

The chemical composition of particulate material plays an important role in the atmosphere, providing cloud and ice nuclei for storm development. This study aims to evaluate and infer the sources of ions, metals, and metalloids in the fine atmospheric particulate matter (PM2.5) from triple border Paraná, Santa Catarina (Brazil), and northeastern Argentina, which is among those with the highest hail incidence in the world. Among the ions, the concentrations presented the following sequence in decreasing order: [Formula: see text]> K+> [Formula: see text]> [Formula: see text]> Ca2+> Cl-> Na+> Mg2+. Regarding the metals and metalloid concentrations, the order was of S > Si > Al > Fe > P > Ti, Cr, Cu, and Zn > Br > Mn, and Ni. The main sources, supported by positive matrix factorization results, are soil and agricultural activities, as well as vehicular emissions due to the agricultural machinery and the displacement of residents. Besides, the influence of aerosols from biomass burning and industrial activities was observed, possibly come from long-distance transport. The composition of PM2.5 presents one or more elements considered present ice nuclei (IN) activity, such as Al, Mn, Cu, Co, Ni, and V (in form of oxides), corroborating with other studies, also, with high hail incidence. However, further studies are needed to verify the role of aerosol characteristics in the formation of IN and, consequently, hail.


Subject(s)
Air Pollutants , Aerosols/analysis , Air Pollutants/analysis , Brazil , Environmental Monitoring , Particulate Matter/analysis , Vehicle Emissions/analysis
12.
Environ Res ; 191: 110184, 2020 Dec.
Article in English | MEDLINE | ID: mdl-32946893

ABSTRACT

COVID-19 has been disturbing human society with an intensity never seen since the Influenza epidemic (Spanish flu). COVID-19 and Influenza are both respiratory viruses and, in this study, we explore the relations of COVID-19 and Influenza with atmospheric variables and socio-economic conditions for tropical and subtropical climates in Brazil. Atmospheric variables, mobility, socio-economic conditions and population information were analyzed using a generalized additive model for daily COVID-19 cases from March 1st to May 15th, 2020, and for daily Influenza hospitalizations (2017-2019) in Brazilian states representing tropical and subtropical climates. Our results indicate that temperature combined with humidity are risk factors for COVID-19 and Influenza in both climate regimes, and the minimum temperature was also a risk factor for subtropical climate. Social distancing is a risk factor for COVID-19 in all regions. For Influenza and COVID-19, the highest Relative Risks (RR) generally occurred in 3 days (lag = 3). Altogether among the studied regions, the most important risk factor is the Human Development Index (HDI), with a mean RR of 1.2492 (95% CI: 1.0926-1.6706) for COVID-19, followed by the elderly fraction for both diseases. The risk factor associated with socio-economic inequalities for Influenza is probably smoothed by Influenza vaccination, which is offered free of charge to the entire Brazilian population. Finally, the findings of this study call attention to the influence of socio-economic inequalities on human health.


Subject(s)
Coronavirus Infections , Influenza Pandemic, 1918-1919 , Influenza, Human , Pandemics , Pneumonia, Viral , Aged , Betacoronavirus , Brazil/epidemiology , COVID-19 , Disease Outbreaks , Humans , Influenza, Human/epidemiology , SARS-CoV-2 , Socioeconomic Factors
13.
Sci Rep ; 10(1): 14812, 2020 09 09.
Article in English | MEDLINE | ID: mdl-32908228

ABSTRACT

This study aims to assess the concentrations of size-fractioned particle mass (PM1.0, PM2.5, PM4.0, PM10) and number (PNC0.3, PNC0.5, PNC1.0, PNC2.5), bacteria, and fungi in a Materials Recycling Facility (MRF) in Brazil. The measurements were performed inside the waste processing shed (P1) and in the outdoor environment (P2) during working days in winter and spring of 2017, and summer of 2019. A total of 2,400 min of PM, 1,440 min of PNC, and 216 samples of bioaerosols were collected in the morning and afternoon. P1 has the strongest air contamination with mean values of 475.5 ± 563.7 µg m-3 for PM10, 58.6 ± 36.0 cm-3 for PNC0.3, 1,088.8 ± 825.2 colony-forming units per cubic meter (CFU m-3) for bacteria, and 2,738.3 ± 1,381.3 CFU m-3 for fungi. The indoor/outdoor ratios indicated the large influence of indoor sources due to the activities performed inside P1 that promote the generation and resuspension of pollutants. Gram-positive bacteria dominated with 58.6% of indoor samples. Overall, our results show a critical indoor air quality situation in a Brazilian MRF, which may cause several health risks for waste pickers. Finally, we call attention to the lack of occupational exposure limits for bioaerosols in industrial workplaces and mainly in MRFs.

14.
Process Saf Environ Prot ; 144: 177-185, 2020 Dec.
Article in English | MEDLINE | ID: mdl-32834561

ABSTRACT

The increase of the industrialization process brought the growth of pollutant emissions into the atmosphere. At the same time, the demand for advances in aerosol filtration is evolving towards more sustainable technologies. Electrospinning is gaining notoriety, once it enables to produce polymeric nanofibers with different additives and also the obtaining of small pore sizes and fiber diameters; desirable features for air filtration materials. Therefore, this work aims to evaluate the filtration performance of cellulose acetate (CA) nanofibers and cationic surfactant cetylpyridinium bromide (CPB) produced by electrospinning technique for retention of aerosol nanoparticles. The pressure drop and collection efficiency measurements of sodium chloride (NaCl) aerosol particles (diameters from 7 to 300 nm) were performed using Scanning Mobility Particle Sizer (SMPS). The average diameter of the electrospun nanofibers used was 239 nm, ranging from 113 to 398 nm. Experimental results indicated that the nanofibers showed good permeability (10-11 m2) and high-efficiency filtration for aerosol nanoparticles (about 100 %), which can include black carbon (BC) and the new coronavirus. The pressure drop was 1.8 kPa at 1.6 cm s-1, which is similar to reported for some high-efficiency nanofiber filters. In addition, it also retains BC particles present in air, which was about 90 % for 375 nm and about 60 % for the 880 nm wavelength. Finally, this research provided information for future designs of indoor air filters and filter media for facial masks with renewable, non-toxic biodegradable, and potential antibacterial characteristics.

15.
Environ Health ; 19(1): 79, 2020 07 06.
Article in English | MEDLINE | ID: mdl-32631375

ABSTRACT

BACKGROUND: Extreme ambient temperatures and air quality have been directly associated with various human diseases from several studies around the world. However, few analyses involving the association of these environmental circumstances with mental and behavioral disorders (MBD) have been carried out, especially in developing countries such as Brazil. METHODS: A time series study was carried out to explore the associations between daily air pollutants (SO2, NO2, O3, and PM10) concentrations and meteorological variables (temperature and relative humidity) on hospital admissions for mental and behavioral disorders for Curitiba, Brazil. Daily hospital admissions from 2010 to 2016 were analyzed by a semi-parametric generalized additive model (GAM) combined with a distributed lag non-linear model (DLNM). RESULTS: Significant associations between environmental conditions (10 µg/m3 increase in air pollutants and temperature °C) and hospitalizations by MBD were found. Air temperature was the environmental variable with the highest relative risk (RR) at 0-day lag for all ages and sexes analyzed, with RR values of 1.0182 (95% CI: 1.0009-1.0357) for men, and 1.0407 (95% CI: 1.0230-1.0587) for women. Ozone exposure was a risk for all women groups, being higher for the young group, with a RR of 1.0319 (95% CI: 1.0165-1.0483). Elderly from both sexes were more susceptible to temperature variability, with a RR of 1.0651 (95% CI: 1.0213-1.1117) for women, and 1.0215 (95% CI: 1.0195-1.0716) for men. CONCLUSIONS: This study suggests that temperatures above and below the thermal comfort threshold, in addition to high concentrations of air pollutants, present significant risks on hospitalizations by MBD; besides, there are physiological and age differences resulting from the effect of this exposure.


Subject(s)
Air Pollutants/adverse effects , Environmental Exposure/adverse effects , Hospitalization/statistics & numerical data , Humidity , Mental Disorders/epidemiology , Temperature , Adolescent , Adult , Aged , Aged, 80 and over , Brazil/epidemiology , Child , Child, Preschool , Female , Humans , Infant , Infant, Newborn , Male , Mental Disorders/etiology , Middle Aged , Risk Assessment , Seasons , Young Adult
16.
Environ Sci Pollut Res Int ; 27(29): 35941-35951, 2020 Oct.
Article in English | MEDLINE | ID: mdl-32162229

ABSTRACT

In this work, atmospheric pollutant emissions of NOx, SOx, CO, particulate matter (PM), total organic compounds (TOC), and CO2 from larger stationary sources of pollutants in Brazil were inventoried and spatialized over the whole Brazilian territory for the base year 2011. The developed inventory comprises a total of 16 refining units, 1730 thermoelectric power plants (TPPs), 96 cement industries, and 64 paper and cellulose industries. To obtain the dataset, some strategies were used, including mail contact, official datasets, personal requesting, web maps usage, and official industry websites. The emission factors were based on lower and upper limits proposed by the AP-42 standards of the US Environmental Protection Agency - USEPA, as well as, emission factors provided by air pollution control agencies, industries, and those identified in the scientific literature. The results show values of 857 ± 415 Gg/year for NOx, 1.51 ± 1.23 Tg/year for SOx, 21.2 ± 13.7 Tg/year for CO, 10.4 ± 10.1 Tg/year for PM, 1.14 ± 0.95 Tg/year for TOC, and 476 ± 142 Tg/year for CO2. In comparison with the official vehicular emission inventory provided by the Ministry of Environment for the year 2011, the total NOx emissions estimated in this work were slightly lower than vehicular emissions, while SOx was 300 times greater than vehicular emissions. For CO, the stationary emissions inventoried were around 17 times greater than vehicular emissions, while PM was approximately 360 times greater than those from vehicles. In terms of comparison with existing global databases, the estimates of this work showed a good level of agreement with the pollutants estimated by the Global Emissions EDGAR v4.3.1, except for PM and CO, which were higher in our estimates. The major contribution of the proposed inventory lies in its improved spatialized distribution, higher resolution, and greater distinctness about the high level of uncertainty associated with the emission inventories for the region.


Subject(s)
Air Pollutants/analysis , Air Pollution/analysis , Brazil , Environmental Monitoring , Vehicle Emissions/analysis
17.
Clin Cancer Res ; 26(9): 2231-2243, 2020 05 01.
Article in English | MEDLINE | ID: mdl-31953311

ABSTRACT

PURPOSE: To provide a better understanding of the interplay between the immune system and brain metastases to advance therapeutic options for this life-threatening disease. EXPERIMENTAL DESIGN: Tumor-infiltrating lymphocytes (TIL) were quantified by semiautomated whole-slide analysis in brain metastases from 81 lung adenocarcinomas. Multi-color staining enabled phenotyping of TILs (CD3, CD8, and FOXP3) on a single-cell resolution. Molecular determinants of the extent of TILs in brain metastases were analyzed by transcriptomics in a subset of 63 patients. Findings in lung adenocarcinoma brain metastases were related to published multi-omic primary lung adenocarcinoma The Cancer Genome Atlas data (n = 230) and single-cell RNA-sequencing (scRNA-seq) data (n = 52,698). RESULTS: TIL numbers within tumor islands was an independent prognostic marker in patients with lung adenocarcinoma brain metastases. Comparative transcriptomics revealed that expression of three surfactant metabolism-related genes (SFTPA1, SFTPB, and NAPSA) was closely associated with TIL numbers. Their expression was not only prognostic in brain metastasis but also in primary lung adenocarcinoma. Correlation with scRNA-seq data revealed that brain metastases with high expression of surfactant genes might originate from tumor cells resembling alveolar type 2 cells. Methylome-based estimation of immune cell fractions in primary lung adenocarcinoma confirmed a positive association between lymphocyte infiltration and surfactant expression. Tumors with a high surfactant expression displayed a transcriptomic profile of an inflammatory microenvironment. CONCLUSIONS: The expression of surfactant metabolism-related genes (SFTPA1, SFTPB, and NAPSA) defines an inflamed subtype of lung adenocarcinoma brain metastases characterized by high abundance of TILs in close vicinity to tumor cells, a prolonged survival, and a tumor microenvironment which might be more accessible to immunotherapeutic approaches.


Subject(s)
Adenocarcinoma of Lung/mortality , Aspartic Acid Endopeptidases/metabolism , Biomarkers, Tumor/metabolism , Brain Neoplasms/mortality , Inflammation/pathology , Lymphocytes, Tumor-Infiltrating/immunology , Pulmonary Surfactant-Associated Protein A/metabolism , Adenocarcinoma of Lung/immunology , Adenocarcinoma of Lung/metabolism , Adenocarcinoma of Lung/pathology , Adult , Aged , Aged, 80 and over , Aspartic Acid Endopeptidases/genetics , Biomarkers, Tumor/genetics , Brain Neoplasms/immunology , Brain Neoplasms/metabolism , Brain Neoplasms/secondary , CD3 Complex/immunology , CD3 Complex/metabolism , CD8 Antigens/immunology , CD8 Antigens/metabolism , Databases, Genetic/statistics & numerical data , Female , Forkhead Transcription Factors/immunology , Forkhead Transcription Factors/metabolism , Humans , Inflammation/immunology , Inflammation/metabolism , Lung Neoplasms/immunology , Lung Neoplasms/metabolism , Lung Neoplasms/mortality , Lung Neoplasms/pathology , Lymphocytes, Tumor-Infiltrating/metabolism , Male , Middle Aged , Prognosis , Pulmonary Surfactant-Associated Protein A/genetics , Survival Rate , Tumor Microenvironment/immunology
18.
Environ Sci Pollut Res Int ; 26(32): 33216-33227, 2019 Nov.
Article in English | MEDLINE | ID: mdl-31520392

ABSTRACT

Great efforts have been made over the years to assess the effectiveness of air pollution controls in place in the metropolitan area of São Paulo (MASP), Brazil. In this work, the community multiscale air quality (CMAQ) model was used to evaluate the efficacy of emission control strategies in MASP, considering the spatial and temporal variability of fine particle concentration. Seven different emission scenarios were modeled to assess the relationship between the emission of precursors and ambient aerosol concentration, including a baseline emission inventory, and six sensitivity scenarios with emission reductions in relation to the baseline inventory: a 50% reduction in SO2 emissions; no SO2 emissions; a 50% reduction in SO2, NOx, and NH3 emissions; no sulfate (PSO4) particle emissions; no PSO4 and nitrate (PNO3) particle emissions; and no PNO3 emissions. Results show that ambient PM2.5 behavior is not linearly dependent on the emission of precursors. Variation levels in PM2.5 concentrations did not correspond to the reduction ratios applied to precursor emissions, mainly due to the contribution of organic and elemental carbon, and other secondary organic aerosol species. Reductions in SO2 emissions are less likely to be effective at reducing PM2.5 concentrations at the expected rate in many locations of the MASP. The largest reduction in ambient PM2.5 was obtained with the scenario that considered a reduction in 50% of SO2, NOx, and NH3 emissions (1 to 2 µg/m3 on average). It highlights the importance of considering the role of secondary organic aerosols and black carbon in the design of effective policies for ambient PM2.5 concentration control.


Subject(s)
Air Pollutants/analysis , Air Pollution/prevention & control , Environmental Policy , Aerosols/analysis , Air Pollution/analysis , Air Pollution/legislation & jurisprudence , Air Pollution/statistics & numerical data , Brazil , Carbon/analysis , Environmental Monitoring/methods , Nitrogen Oxides/analysis , Particulate Matter/analysis , Soot/analysis
19.
Environ Sci Pollut Res Int ; 26(31): 31699-31716, 2019 Nov.
Article in English | MEDLINE | ID: mdl-31485945

ABSTRACT

In this paper, we analyze the variability of the ozone concentration over São Paulo Macrometropolis, as well the factors, which determined the tendency observed in the last two decades. Time series of hourly ozone concentrations measured at 16 automated stations from an air quality network from 1996 to 2017 were analyzed. The temporal variability of ozone concentrations exhibits well-defined daily and seasonal patterns. Ozone presents a significant positive correlation between the number of cases (thresholds of 100-160 µg m-3) and the fuel sales of gasohol and diesel. The ozone concentrations do not exhibit significant long-term trends, but some sites present positive trends that occurs in sites in the proximity of busy roads and negative trends that occurs in sites located in residential areas or next to trees. The effect of atmospheric process of transport and ozone formation was analyzed using a quantile regression model (QRM). This statistical model can deal with the nonlinearities that appear in the relationship of ozone and other variables and is applicable to time series with non-normal distribution. The resulting model explains 0.76% of the ozone concentration variability (with global coefficient of determination R1 = 0.76) providing a better representation than an ordinary least square regression model (with coefficient of determination R2 = 0.52); the effect of radiation and temperature are the most critical in determining the highest ozone quantiles.


Subject(s)
Air Pollution/analysis , Ozone/analysis , Brazil , Environmental Monitoring/methods
20.
Proc Natl Acad Sci U S A ; 116(39): 19318-19323, 2019 09 24.
Article in English | MEDLINE | ID: mdl-31501347

ABSTRACT

The emissions, deposition, and chemistry of volatile organic compounds (VOCs) are thought to be influenced by underlying landscape heterogeneity at intermediate horizontal scales of several hundred meters across different forest subtypes within a tropical forest. Quantitative observations and scientific understanding at these scales, however, remain lacking, in large part due to a historical absence of canopy access and suitable observational approaches. Herein, horizontal heterogeneity in VOC concentrations in the near-canopy atmosphere was examined by sampling from an unmanned aerial vehicle (UAV) flown horizontally several hundred meters over the plateau and slope forests in central Amazonia during the morning and early afternoon periods of the wet season of 2018. Unlike terpene concentrations, the isoprene concentrations in the near-canopy atmosphere over the plateau forest were 60% greater than those over the slope forest. A gradient transport model constrained by the data suggests that isoprene emissions differed by 220 to 330% from these forest subtypes, which is in contrast to a 0% difference implemented in most present-day biosphere emissions models (i.e., homogeneous emissions). Quantifying VOC concentrations, emissions, and other processes at intermediate horizontal scales is essential for understanding the ecological and Earth system roles of VOCs and representing them in climate and air quality models.


Subject(s)
Atmosphere/chemistry , Butadienes/analysis , Forests , Hemiterpenes/analysis , Volatile Organic Compounds/analysis , Brazil , Seasons , Trees/classification , Trees/physiology
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