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1.
Int J Dent Hyg ; 21(1): 41-58, 2023 Feb.
Article in English | MEDLINE | ID: mdl-36300683

ABSTRACT

OBJECTIVES: The aim of this review was to compare air polishing devices with conventional periodontal therapy (hand instrumentation and/or ultrasonic debridement), in terms of their clinical, microbiological and patient-related outcomes in patients undergoing periodontal maintenance therapy. METHODS: An online database search was performed to identify randomized controlled trials (RCTs) published between January 1987 and March 2021. Selection, data extraction and assessment risk of individual bias were conducted by two independent reviewers. The PICO method was employed to formulate the question: "In patients undergoing periodontal maintenance therapy/supportive periodontal therapy, do air polishing systems result in better clinical, microbiological and patient related outcomes than ultrasonic instrumentation or hand instrumentation?" Primary outcomes were bleeding on probing, gingival index and/or bleeding index. Secondary outcomes were probing depth, clinical attachment level, plaque index, microbiological counts and/or patient tolerance. The risk of bias was evaluated and the systematic review protocol was registered in PROSPERO. RESULTS: The electronic search yielded 501 references of which 14 were included in this review. A meta-analysis was not performed due to great heterogeneity within the studies. Air polishing devices and conventional periodontal therapy presented identical results in the 14 studies analysed; however, air polishing devices presented better antimicrobial behaviour and better patient-related outcomes. CONCLUSIONS: Both air polishing devices and conventional techniques demonstrated no difference in terms of clinical efficacy; however, air polishing devices seem to present improved antimicrobial results. In addition, they are also a safer, faster and more comfortable option for patients undergoing supportive periodontal therapy.


Subject(s)
Dental Polishing , Dental Scaling , Humans , Treatment Outcome , Periodontal Index
2.
Medicina (Kaunas) ; 58(1)2022 Jan 12.
Article in English | MEDLINE | ID: mdl-35056421

ABSTRACT

Background and Objectives: Peri-implantitis treatment is still undefined. Regenerative treatment is expensive and technically demanding due to the need to handle biomaterials, membranes and different methodologies of decontamination. Resective treatment and implantoplasty might be a viable solution. This case series presents a 24 month retrospective observational study of 10 peri-implantitis patients treated with implantoplasty. Materials and Methods: In the present case series, 10 peri-implantitis patients (20 implants) were treated with a resective approach and implantoplasty. Previous to implantoplasty, all patients underwent non-surgical treatment. This surgery consisted in a full-thickness flap and implant surface exposure. The exposed non-osseointegrated implant body was submitted to implantoplasty. The flap was apically repositioned and sutured. Patients were accompanied for 24 months. Results: The mean initial probing depth (PD) (PD = 5.37 ± 0.86 mm), bleeding on probing (BoP = 0.12 ± 0.06%) and suppuration (Sup = 0.01 ± 0.01%) decreased significantly at the 12 month evaluation (PD = 2.90 ± 0.39 mm; BoP = 0.01 ± 0.01% and Sup = 0.00 ± 0.00%). Between the 12 and 24 month evaluations, there were no significant clinical changes (PD = 2.85 ± 0.45 mm; BoP = 0.01 ± 0.01% and Sup = 0.00 ± 0.00%). Mucosal recession (MR) had a significant increase between the baseline and the first 12 months (0.69 ± 0.99 mm vs. 1.96 ± 1.33 mm), but there were no significant changes between the 12th and 24th month (1.94 ± 1.48 mm). The success rate was 100% without implant fracture or loss. Conclusions: Resective surgery and implantoplasty might be a valid option in some specific peri-implantitis cases. Properly designed clinical trials are needed to confirm this possibility.


Subject(s)
Peri-Implantitis , Humans , Peri-Implantitis/surgery , Periodontal Index , Research , Surgical Flaps
3.
Clin Epigenetics ; 13(1): 203, 2021 11 03.
Article in English | MEDLINE | ID: mdl-34732256

ABSTRACT

BACKGROUND: In mucosal barrier interfaces, flexible responses of gene expression to long-term environmental changes allow adaptation and fine-tuning for the balance of host defense and uncontrolled not-resolving inflammation. Epigenetic modifications of the chromatin confer plasticity to the genetic information and give insight into how tissues use the genetic information to adapt to environmental factors. The oral mucosa is particularly exposed to environmental stressors such as a variable microbiota. Likewise, persistent oral inflammation is the most important intrinsic risk factor for the oral inflammatory disease periodontitis and has strong potential to alter DNA-methylation patterns. The aim of the current study was to identify epigenetic changes of the oral masticatory mucosa in response to long-term inflammation that resulted in periodontitis. METHODS AND RESULTS: Genome-wide CpG methylation of both inflamed and clinically uninflamed solid gingival tissue biopsies of 60 periodontitis cases was analyzed using the Infinium MethylationEPIC BeadChip. We validated and performed cell-type deconvolution for infiltrated immune cells using the EpiDish algorithm. Effect sizes of DMPs in gingival epithelial and fibroblast cells were estimated and adjusted for confounding factors using our recently developed "intercept-method". In the current EWAS, we identified various genes that showed significantly different methylation between periodontitis-inflamed and uninflamed oral mucosa in periodontitis patients. The strongest differences were observed for genes with roles in wound healing (ROBO2, PTP4A3), cell adhesion (LPXN) and innate immune response (CCL26, DNAJC1, BPI). Enrichment analyses implied a role of epigenetic changes for vesicle trafficking gene sets. CONCLUSIONS: Our results imply specific adaptations of the oral mucosa to a persistent inflammatory environment that involve wound repair, barrier integrity, and innate immune defense.


Subject(s)
Inflammation/genetics , Mucous Membrane/abnormalities , Periodontal Diseases/genetics , Stomatognathic System/physiopathology , Adult , Epigenesis, Genetic/genetics , Epigenesis, Genetic/immunology , Female , Humans , Inflammation/physiopathology , Male , Middle Aged , Mucous Membrane/physiopathology , Periodontal Diseases/physiopathology
4.
Clin Oral Investig ; 24(9): 3121-3132, 2020 Sep.
Article in English | MEDLINE | ID: mdl-31916034

ABSTRACT

OBJECTIVE: To assess longitudinal peri-implant tissue evaluation in a plaque compromised ligature free dog model, clinically, radiographically, microbiologically and histologically. MATERIALS AND METHODS: Six beagle mandibular premolars and first molars were extracted. Plaque accumulated for 16 weeks. Two implants were placed per hemi-mandible. For 17 weeks, control implants (CI) in one hemi-mandible were brushed daily; test implants (TI) in the other were not. These parameters were then assessed: clinically, probing depth (PD), bleeding-on-probing (BOP), presence of plaque (PP) and clinical attachment level (CAL); radiographically, marginal bone level; microbiologically, counts for Streptococcus spp., Fusobacterium spp., Porphyromonas gingivalis, Aggregatibacter actinomycetemcomitans, Prevotella intermedia and total bacterial load. At week 17, histomorphometric analysis was performed (MM-ISH (mucosal margin-implant shoulder); ISH-fBIC (implant shoulder-first bone-to-implant contact); MM-aJE (mucosal margin-apical area junctional epithelium); MM-aINF (mucosal margin-apical limit of the inflammatory infiltrate); %INF (percentage of inflammatory infiltrate)). RESULTS: At week 17, TI had significant increased PD, BOP, PP and CAL versus baseline. All clinical variables presented intergroup differences. There was no intergroup difference for radiographic bone loss (p > 0.05). Total bacteria, Fusobacterium spp., A. actinomycetemcomitans and P. gingivalis had intergroup differences. There was no statistically significant intergroup difference for ISH-fBIC. CONCLUSIONS: Longitudinal microbiology evaluation detected a shift period. Final intergroup microbiological differences were the basis of W17 clinical intergroup differences, with higher values in TI. Microbiological and clinical changes detected in peri-implant tissues were compatible with onset of peri-implant disease. Despite histological inflammatory intergroup difference, no histological or radiographic intergroup bone loss was detected. CLINICAL RELEVANCE: This study set-up describes a valuable method for generating "true" early peri-implant defects without mechanical trauma.


Subject(s)
Alveolar Bone Loss , Dental Implants , Peri-Implantitis , Periodontitis , Alveolar Bone Loss/diagnostic imaging , Animals , Dental Plaque Index , Dogs , Peri-Implantitis/diagnostic imaging , Periodontitis/diagnostic imaging , Prevotella intermedia
5.
Clin Epigenetics ; 11(1): 105, 2019 07 22.
Article in English | MEDLINE | ID: mdl-31331382

ABSTRACT

BACKGROUND: The oral mucosa has an important role in maintaining barrier integrity at the gateway to the gastrointestinal and respiratory tracts. Smoking is a strong environmental risk factor for the common oral inflammatory disease periodontitis and oral cancer. Cigarette smoke affects gene methylation and expression in various tissues. This is the first epigenome-wide association study (EWAS) that aimed to identify biologically active methylation marks of the oral masticatory mucosa that are associated with smoking. RESULTS: Ex vivo biopsies of 18 current smokers and 21 never smokers were analysed with the Infinium Methylation EPICBeadChip and combined with whole transcriptome RNA sequencing (RNA-Seq; 16 mio reads per sample) of the same samples. We analysed the associations of CpG methylation values with cigarette smoking and smoke pack year (SPY) levels in an analysis of covariance (ANCOVA). Nine CpGs were significantly associated with smoking status, with three CpGs mapping to the genetic region of CYP1B1 (cytochrome P450 family 1 subfamily B member 1; best p = 5.5 × 10-8) and two mapping to AHRR (aryl-hydrocarbon receptor repressor; best p = 5.9 × 10-9). In the SPY analysis, 61 CpG sites at 52 loci showed significant associations of the quantity of smoking with changes in methylation values. Here, the most significant association located to the gene CYP1B1, with p = 4.0 × 10-10. RNA-Seq data showed significantly increased expression of CYP1B1 in smokers compared to non-smokers (p = 2.2 × 10-14), together with 13 significantly upregulated transcripts. Six transcripts were significantly downregulated. No differential expression was observed for AHRR. In vitro studies with gingival fibroblasts showed that cigarette smoke extract directly upregulated the expression of CYP1B1. CONCLUSION: This study validated the established role of CYP1B1 and AHRR in xenobiotic metabolism of tobacco smoke and highlights the importance of epigenetic regulation for these genes. For the first time, we give evidence of this role for the oral masticatory mucosa.


Subject(s)
Basic Helix-Loop-Helix Transcription Factors/genetics , Cigarette Smoking/adverse effects , Cytochrome P-450 CYP1B1/genetics , Epigenomics/methods , Gene Expression Profiling/methods , Mouth Mucosa/chemistry , Repressor Proteins/genetics , Adult , Case-Control Studies , Cigarette Smoking/genetics , CpG Islands , DNA Methylation/drug effects , Epigenesis, Genetic , Female , Genome-Wide Association Study , Healthy Volunteers , Humans , Male , Middle Aged , Sequence Analysis, RNA , Smokers , Up-Regulation , Exome Sequencing
6.
Curr Microbiol ; 76(6): 687-697, 2019 Jun.
Article in English | MEDLINE | ID: mdl-30953134

ABSTRACT

Although some previous studies have described the microbial diversity of termite in Brazil, the lack of studies about this subject is still evident. In the present study, we described by whole genome sequencing, the gut microbiota of seven species of termites (Termitidae) with different feeding habits from four Brazilian locations. For the litter species, the most abundant bacterial phylum was Firmicutes, where Cornitermes cumulans and Syntermes dirus (Syntermitinae) were identified. For the humus species, the most abundant bacterial phylum was Proteobacteria where three species were studied: Cyrilliotermes strictinasus (Syntermitinae), Grigiotermes bequaerti (Apicotermitinae), and Orthognathotermes mirim (Termitinae). For the wood termites, Firmicutes and Spirochaetes were the most abundant phyla, respectively, where two species were identified: Nasutitermes aquilinus and Nasutitermes jaraguae (Nasutitermitinae). The gut microbiota of all four examined subfamilies shared a conserved functional and carbohydrate-active enzyme profile and specialized in cellulose and chitin degradation. Taken together, these results provide insight into the partnerships between termite and microbes that permit the use of refractory energy sources.


Subject(s)
Bacteria/classification , Bacteria/genetics , Gastrointestinal Microbiome , Isoptera/microbiology , Animals , Biodiversity , Brazil , Feeding Behavior , Isoptera/physiology , Metagenomics
7.
Sci Rep ; 7(1): 17554, 2017 12 14.
Article in English | MEDLINE | ID: mdl-29242567

ABSTRACT

The cattle tick Rhipicephalus microplus is a hematophagous ectoparasite that causes important economic losses in livestock. Different species of ticks harbor a symbiont bacterium of the genus Coxiella. It was showed that a Coxiella endosymbiont from R. microplus (CERM) is a vertically transmitted mutualist symbiont, comprising 98% of the 16S rRNA sequences in both eggs and larvae. Sequencing of the bacterial genome revealed genes for biosynthetic pathways for several vitamins and key metabolic cofactors that may provide a nutritional complement to the tick host. The CERM was abundant in ovary and Malpighian tubule of fully engorged female. Tetracycline treatment of either the tick or the vertebrate host reduced levels of bacteria in progeny in 74% for eggs and 90% for larvae without major impact neither on the reproductive fitness of the adult female or on embryo development. However, CERM proved to be essential for the tick to reach the adult life stage, as under antibiotic treatment no tick was able to progress beyond the metanymph stage. Data presented here suggest that interference in the symbiotic CERM-R. microplus relationship may be useful to the development of alternative control methods, highlighting the interdependence between ticks and their endosymbionts.


Subject(s)
Coxiella/physiology , Rhipicephalus/microbiology , Symbiosis , Animals , Coxiella/drug effects , Coxiella/genetics , Female , Genome, Bacterial/genetics , Larva/drug effects , Larva/growth & development , Larva/microbiology , Nymph/drug effects , Nymph/growth & development , Nymph/microbiology , Ovum/drug effects , Ovum/growth & development , Ovum/microbiology , Rhipicephalus/growth & development , Symbiosis/drug effects , Tetracycline/pharmacology
10.
Microb Ecol ; 68(3): 441-52, 2014 Oct.
Article in English | MEDLINE | ID: mdl-24821495

ABSTRACT

Bacterial resistance to antibiotics has become a public health issue. Over the years, pathogenic organisms with resistance traits have been studied due to the threat they pose to human well-being. However, several studies raised awareness to the often disregarded importance of environmental bacteria as sources of resistance mechanisms. In this work, we analyze the diversity of antibiotic-resistant bacteria occurring in aquatic environments of the state of Rio de Janeiro, Brazil, that are subjected to distinct degrees of anthropogenic impacts. We access the diversity of aquatic bacteria capable of growing in increasing ampicillin concentrations through 16S rRNA gene libraries. This analysis is complemented by the characterization of antibiotic resistance profiles of isolates obtained from urban aquatic environments. We detect communities capable of tolerating antibiotic concentrations up to 600 times higher than the clinical levels. Among the resistant organisms are included potentially pathogenic species, some of them classified as multiresistant. Our results extend the knowledge of the diversity of antibiotic resistance among environmental microorganisms and provide evidence that the diversity of drug-resistant bacteria in aquatic habitats can be influenced by pollution.


Subject(s)
Ampicillin Resistance , Bacteria/drug effects , Water Microbiology , Ampicillin , Bacteria/classification , Bacteria/genetics , Bathing Beaches , Bays , Brazil , Cities , DNA, Bacterial/genetics , Gene Library , RNA, Ribosomal, 16S/genetics , Rivers/microbiology , Seawater/microbiology
11.
J Invest Surg ; 27(1): 50-6, 2014 Feb.
Article in English | MEDLINE | ID: mdl-23977842

ABSTRACT

OBJECTIVE: To analyze the current available experimental canine models for peri-implantitis. MATERIAL AND METHODS: Electronic databases of the PubMed, EBSCOhost, and Cochrane Library were searched for dog studies on peri-implantitis induction methodology, until October 31, 2012. The eligibility of the studies for this review was based on the screening of two independent reviewers. RESULTS: After screening, 50 publications were eligible for review. The most used animal model was the Beagle (n = 23). The bilateral mandible four premolar were the most extracted group of teeth (n = 20) and the majority of the studies had the placement of six implants in the jaw with only five (n = 5) of them reporting on interimplant distance. All publications reported peri-implantitis induction using ligature during a variable period of time and with a subsequent heterogeneous loss of peri-implant bone. The ligature placement and maintenance around the implant varied greatly between the publications. The constant use of ligatures, sometimes traumatically forced to the peri-implant sulcus, may influence the degree of bone loss during canine experimental peri-implantitis overlapping the contribution of implant surface to the onset and development of this pathology. CONCLUSIONS: A great heterogeneity exists among the studies reporting on the induction of peri-implantitis in canine. Experimental peri-implantitis model has suffered a change through the last years, from an exclusive ligature-induced to a ligature-induced and nonligature induced progression, thus approaching the natural occurrence of this pathology. The ideal canine peri-implantitis induction model would be a naturally occurring peri-implanititis induction without the action of any ligature.


Subject(s)
Dental Implantation/adverse effects , Disease Models, Animal , Dogs , Peri-Implantitis , Animals , Bicuspid , Dental Implants , Disease Progression , Ligation
12.
Springerplus ; 2: 609, 2013.
Article in English | MEDLINE | ID: mdl-24324923

ABSTRACT

ABSTRACT: Cockroaches are insects that can accommodate diets of different composition, including lignocellulosic materials. Digestion of these compounds is achieved by the insect's own enzymes and also by enzymes produced by gut symbionts. The presence of different and modular bacterial phyla on the cockroach gut tract suggests that this insect could be an interesting model to study the organization of gut bacterial communities associated with the digestion of different lignocellulosic diets. Thus, changes in the diversity of gut associated bacterial communities of insects exposed to such diets could give useful insights on how to improve hemicellulose and cellulose breakdown systems. In this work, through sequence analysis of 16S rRNA clone libraries, we compared the phylogenetic diversity and composition of gut associated bacteria in the cockroach Periplaneta americana collected in the wild-types or kept on two different diets: sugarcane bagasse and crystalline cellulose. These high fiber diets favor the predominance of some bacterial phyla, such as Firmicutes, when compared to wild-types cockroaches. Our data show a high bacterial diversity in P. americana gut, with communities composed mostly by the phyla Bacteroidetes, Firmicutes, Proteobacteria and Synergistetes. Our data show that the composition and diversity of gut bacterial communities could be modulated by diet composition. The increased presence of Firmicutes in sugarcane bagasse and crystalline cellulose-fed animals suggests that these bacteria are strongly involved in lignocellulose digestion in cockroach guts. BACKGROUND: Cockroaches are omnivorous animals that can incorporate in their diets food of different composition, including lignocellulosic materials. Digestion of these compounds is achieved by the insect's own enzymes and also by enzymes produced by gut symbiont. However, the influence of diet with different fiber contents on gut bacterial communities and how this affects the digestion of cockroaches is still unclear. The presence of some bacterial phyla on gut tract suggests that cockroaches could be an interesting model to study the organization of gut bacterial communities during digestion of different lignocellulosic diets. Knowledge about the changes in diversity of gut associated bacterial communities of insects exposed to such diets could give interesting insights on how to improve hemicellulose and cellulose breakdown systems. METHODOLOGY/PRINCIPAL FINDINGS: We compared the phylogenetic diversity and composition of gut associated bacteria in the cockroach P. americana caught on the wild or kept on two different diets: sugarcane bagasse and crystalline cellulose. For this purpose we constructed bacterial 16S rRNA gene libraries which showed that a diet rich in cellulose and sugarcane bagasse favors the predominance of some bacterial phyla, more remarkably Firmicutes, when compared to wild cockroaches. Rarefaction analysis, LIBSHUFF and UniFrac PCA comparisons showed that gene libraries of wild insects were the most diverse, followed by sugarcane bagasse fed and then cellulose fed animals. It is also noteworthy that cellulose and sugarcane bagasse gene libraries resemble each other. CONCLUSION/SIGNIFICANCE: Our data show a high bacterial diversity in P. americana gut, with communities composed mostly by the phyla Bacteroidetes, Firmicutes, Proteobacteria and Synergistetes. The composition and diversity of gut bacterial communities could be modulated by font of diet composition. The increased presence of Firmicutes in sugarcane bagasse and crystalline cellulose-fed animals suggests that these bacteria are strongly involved in lignocellulose digestion in cockroach guts.

13.
PLoS One ; 8(9): e76321, 2013.
Article in English | MEDLINE | ID: mdl-24086729

ABSTRACT

The Archaea domain is ubiquitously distributed and extremely diverse, however, environmental factors that shape archaeal community structure are not well known. Aquatic environments, including the water column and sediments harbor many new uncultured archaeal species from which metabolic and ecological roles remain elusive. Some environments are especially neglected in terms of archaeal diversity, as is the case of pristine tropical areas. Here we investigate the archaeal composition in marine and freshwater systems from Ilha Grande, a South Atlantic tropical environment. All sampled habitats showed high archaeal diversity. No OTUs were shared between freshwater, marine and mangrove sediment samples, yet these environments are interconnected and geographically close, indicating environment-specific community structuring. Group II Euryarchaeota was the main clade in marine samples, while the new putative phylum Thaumarchaeota and LDS/RCV Euryarchaeota dominated freshwaters. Group III Euryarchaeota, a rare clade, was also retrieved in reasonable abundance in marine samples. The archaeal community from mangrove sediments was composed mainly by members of mesophilic Crenarchaeota and by a distinct clade forming a sister-group to Crenarchaeota and Thaumarchaeota. Our results show strong environment-specific community structuring in tropical aquatic Archaea, as previously seen for Bacteria.


Subject(s)
Adaptation, Biological/physiology , Archaea/physiology , Biota/physiology , Environment , Geologic Sediments/microbiology , Phylogeny , Water Microbiology , Base Sequence , Brazil , DNA Primers/genetics , Gene Library , Likelihood Functions , Models, Genetic , Molecular Sequence Data , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Species Specificity , Tropical Climate
14.
Microb Ecol ; 65(1): 197-204, 2013 Jan.
Article in English | MEDLINE | ID: mdl-22945233

ABSTRACT

Termites inhabit tropical and subtropical areas where they contribute to structure and composition of soils by efficiently degrading biomass with aid of resident gut microbiota. In this study, culture-independent molecular analysis was performed based on bacterial and archaeal 16S rRNA clone libraries to describe the gut microbial communities within Cornitermes cumulans, a South American litter-feeding termite. Our data reveal extensive bacterial diversity, mainly composed of organisms from the phyla Spirochaetes, Bacteroidetes, Firmicutes, Actinobacteria, and Fibrobacteres. In contrast, a low diversity of archaeal 16S rRNA sequences was found, comprising mainly members of the Crenarchaeota phylum. The diversity of archaeal methanogens was further analyzed by sequencing clones from a library for the mcrA gene, which encodes the enzyme methyl coenzyme reductase, responsible for catalyzing the last step in methane production, methane being an important greenhouse gas. The mcrA sequences were diverse and divided phylogenetically into three clades related to uncultured environmental archaea and methanogens found in different termite species. C. cumulans is a litter-feeding, mound-building termite considered a keystone species in natural ecosystems and also a pest in agriculture. Here, we describe the archaeal and bacterial communities within this termite, revealing for the first time its intriguing microbiota.


Subject(s)
Archaea/classification , Bacteria/classification , Gastrointestinal Tract/microbiology , Isoptera/microbiology , Metagenome , Animals , Archaea/genetics , Archaea/isolation & purification , Bacteria/genetics , Bacteria/isolation & purification , DNA, Archaeal/genetics , DNA, Bacterial/genetics , Phylogeny , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA
15.
Microb Ecol ; 65(1): 205-13, 2013 Jan.
Article in English | MEDLINE | ID: mdl-22864853

ABSTRACT

The association of metazoan, protist, and microbial communities with Scleractinian corals forms the basis of the coral holobiont. Coral bleaching events have been occurring around the world, introducing changes in the delicate balance of the holobiont symbiotic interactions. In this study, Archaea, bacteria, and eukaryotic phototrophic plastids of bleached colonies of the Brazilian coral Siderastrea stellata were analyzed for the first time, using 16S rRNA gene libraries. Prokaryotic communities were slightly more diverse in healthy than in bleached corals. However, the eukaryotic phototrophic plastids community was more diverse in bleached corals. Archaea phylogenetic analyses revealed a high percentage of Crenarchaeota sequences, mainly related to Nitrosopumilus maritimus and Cenarchaeum symbiosum. Dramatic changes in bacterial community composition were observed in this bleaching episode. The dominant bacterial group was Alphaproteobacteria followed by Gammaproteobacteria in bleached and Betaproteobacteria in healthy samples. Plastid operational taxonomic units (OTUs) from both coral samples were mainly related to red algae chloroplasts (Florideophycea), but we also observed some OTUs related to green algae chloroplasts (Chlorophyta). There seems to be a strong relationship between the Bacillariophyta phylum and our bleached coral samples as clones related to members of the diatom genera Amphora and Nitzschia were detected. The present study reveals information from a poorly investigated coral species and improves the knowledge of coral microbial community shifts that could occur during bleaching episodes.


Subject(s)
Anthozoa/microbiology , Archaea/classification , Bacteria/classification , Chlorophyta/genetics , Rhodophyta/classification , Animals , Archaea/genetics , Bacteria/genetics , Brazil , Chlorophyta/classification , DNA Barcoding, Taxonomic , DNA, Algal/genetics , DNA, Archaeal/genetics , DNA, Bacterial/genetics , Diatoms/classification , Diatoms/genetics , Ecosystem , Gene Library , Phylogeny , Plastids/genetics , RNA, Ribosomal, 16S/genetics , Rhodophyta/genetics , Symbiosis
16.
PLoS One ; 7(11): e51175, 2012.
Article in English | MEDLINE | ID: mdl-23226484

ABSTRACT

Despite a great number of published studies addressing estuarine, freshwater and marine bacterial diversity, few have examined urban coastal lagoons in tropical habitats. There is an increasing interest in monitoring opportunistic pathogens as well as indigenous microbial community members in these water bodies by current molecular and microbiological approaches. In this work, bacterial isolates were obtained through selective plate dilution methods to evaluate antibiotic resistances. In addition, 16S rRNA gene libraries were prepared from environmental waters and mixed cultures grown in BHI medium inoculated with Jacarepaguá lagoon waters. Denaturing gradient gel electrophoresis (DGGE) analyses showed distinct community profiles between environmental communities from each studied site and their cultured counterparts. A total of 497 bacterial sequences were analyzed by MOTHUR, yielding 245 operational taxonomic units (OTUs) grouped at 97% similarity. CCA diagrams showcased how several environmental variables affect the distribution of 18 bacterial orders throughout the three distinct habitats. UniFrac metrics and Venn diagrams revealed that bacterial communities retrieved through each experimental approach were significantly different and that only one OTU, closely related to Vibrio cholerae, was shared between them. Potentially pathogenic bacteria were isolated from most sampled environments, fifty percent of which showed antibiotic resistance.


Subject(s)
Bacteria/genetics , Biodiversity , Cities , Plankton/genetics , Seawater/microbiology , Tropical Climate , Water Pollution/analysis , Anti-Bacterial Agents/pharmacology , Bacteria/classification , Bacteria/drug effects , Brazil , Denaturing Gradient Gel Electrophoresis , Environment , Gene Library , Geography , Microbial Sensitivity Tests , Molecular Sequence Data , Phylogeny , Plankton/classification , Plankton/drug effects , RNA, Ribosomal, 16S/genetics , Water/chemistry , Water Microbiology
17.
PLoS One ; 7(11): e48505, 2012.
Article in English | MEDLINE | ID: mdl-23133637

ABSTRACT

The shortage of petroleum reserves and the increase in CO(2) emissions have raised global concerns and highlighted the importance of adopting sustainable energy sources. Second-generation ethanol made from lignocellulosic materials is considered to be one of the most promising fuels for vehicles. The giant snail Achatina fulica is an agricultural pest whose biotechnological potential has been largely untested. Here, the composition of the microbial population within the crop of this invasive land snail, as well as key genes involved in various biochemical pathways, have been explored for the first time. In a high-throughput approach, 318 Mbp of 454-Titanium shotgun metagenomic sequencing data were obtained. The predominant bacterial phylum found was Proteobacteria, followed by Bacteroidetes and Firmicutes. Viruses, Fungi, and Archaea were present to lesser extents. The functional analysis reveals a variety of microbial genes that could assist the host in the degradation of recalcitrant lignocellulose, detoxification of xenobiotics, and synthesis of essential amino acids and vitamins, contributing to the adaptability and wide-ranging diet of this snail. More than 2,700 genes encoding glycoside hydrolase (GH) domains and carbohydrate-binding modules were detected. When we compared GH profiles, we found an abundance of sequences coding for oligosaccharide-degrading enzymes (36%), very similar to those from wallabies and giant pandas, as well as many novel cellulase and hemicellulase coding sequences, which points to this model as a remarkable potential source of enzymes for the biofuel industry. Furthermore, this work is a major step toward the understanding of the unique genetic profile of the land snail holobiont.


Subject(s)
Metagenomics , Animals , Biofuels , Biomass , Biotechnology/methods , Carbohydrates/chemistry , Carbon Dioxide/chemistry , Computational Biology/methods , Ethanol/chemistry , Glycoside Hydrolases/chemistry , Lignin/chemistry , Metagenome , Oligosaccharides/chemistry , Petroleum/metabolism , Phylogeny , Protein Binding , Sequence Analysis, DNA/methods , Snails
18.
PLoS One ; 7(3): e33440, 2012.
Article in English | MEDLINE | ID: mdl-22438932

ABSTRACT

The invasive land snail Achatina fulica is one of the most damaging agricultural pests worldwide representing a potentially serious threat to natural ecosystems and human health. This species is known to carry parasites and harbors a dense and metabolically active microbial community; however, little is known about its diversity and composition. Here, we assessed for the first time the complexity of bacterial communities occurring in the digestive tracts of field-collected snails (FC) by using culture-independent molecular analysis. Crop and intestinal bacteria in FC were then compared to those from groups of snails that were reared in the laboratory (RL) on a sugarcane-based diet. Most of the sequences recovered were novel and related to those reported for herbivorous gut. Changes in the relative abundance of Bacteroidetes and Firmicutes were observed when the snails were fed a high-sugar diet, suggesting that the snail gut microbiota can influence the energy balance equation. Furthermore, this study represents a first step in gaining a better understanding of land snail gut microbiota and shows that this is a complex holobiont system containing diverse, abundant and active microbial communities.


Subject(s)
Metagenome , Snails/microbiology , Animals , Bacteria/classification , Bacteria/genetics , Bacteria/isolation & purification , Base Sequence , DNA Primers/genetics , DNA, Bacterial/genetics , Diet , Digestive System/microbiology , Ecosystem , Humans , Phylogeny , Saccharum , Snails/pathogenicity
19.
Mol Biol Rep ; 39(4): 3401-7, 2012 Apr.
Article in English | MEDLINE | ID: mdl-21717060

ABSTRACT

A culture-independent molecular phylogenetic analysis was carried out to study for the first time the diversity of bacterial ammonia monooxygenase subunit A (amoA) and nitrogenase reductase subunit H (nifH) genes from Urca inlet at Guanabara Bay in Rio de Janeiro, Brazil. Most bacterial amoA and nifH sequences exhibited identities of less than 95% to those in the GenBank database revealing that novel ammonia-oxidizing bacteria and nitrogen-fixing microorganisms may exist in this tropical marine environment. The observation of a large number of clones related to uncultured bacteria also indicates the necessity to describe these microorganisms and to develop new cultivation methodologies.


Subject(s)
Bacteria/genetics , Bays/microbiology , Ecosystem , Genetic Variation , Nitrogen Cycle/genetics , Seawater/microbiology , Tropical Climate , Bacteria/enzymology , Brazil , Genes, Bacterial/genetics , Likelihood Functions , Oxidoreductases/genetics , Phylogeny
20.
Rev. bras. mastologia ; 21(4): 148-152, out.-dez. 2011. tab
Article in Portuguese | LILACS | ID: lil-722471

ABSTRACT

Objetivo: avaliar a sensibilidade e a especificidade dos exames de mamografia e de ultrassonografia na detecção de alterações mamárias, em mulheres com hipertrofia mamária em seus diversos graus, fazendo correlação com os achados nos exames histopatológicos. Métodos: foi feito um estudo prospectivo, realizado com 60 pacientes, portadoras de hipertrofia mamária, com idade entre 16 e 72 anos, no Serviço de Cirurgia Plástica do Hospital Universitário da Universidade Federal do Maranhão. De acordo com a faixa etária, foi indicado o exame de imagem, classificando o resultado pelo sistema Breast Imaging Reporting and Date System (BI-RADS®). O resultado desse exame foi correlacionado com o grau de hipertrofia (peso) e com o exame histopatológico das 120 peças cirúrgicas obtidas na cirurgia plástica de redução mamária. Resultados: o exame histopatológico detectou 47,5% de lesões benignas não neoplástica, sendo 7,5% com risco relativo levemente aumentado. O exame de ultrassonografia apresentou especificidade de 80,6% e sensibilidade de 40,5%. A mamografia apresentou especificidade de 54,5% e sensibilidade de 49,0%. A ultrassonografia mamária não apresentou comprometimento da especificidade, mas apresentou baixa sensibilidade. A mamografia apresentou baixa especificidade e sensibilidade. Mesmo em faixas etárias mais avançadas, onde se esperava uma redução da densidade mamária que favorecia a sensibilidade mamográfica, o resultado foi compatível com o encontrado em mamas densas. Conclusão: estes dados sugerem que a hipertrofia mamária deve ser considerada na interpretação de laudos de mamografia e de ultrassonografia em rastreamento de doenças mamárias.


Subject(s)
Humans , Female , Adolescent , Middle Aged , Young Adult , Diagnostic Imaging , Hypertrophy , Breast/pathology , Mammography/standards , Sensitivity and Specificity , Ultrasonography, Mammary/standards
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