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1.
Struct Dyn ; 4(5): 054303, 2017 Sep.
Article in English | MEDLINE | ID: mdl-28781982

ABSTRACT

Efforts to understand matter at ever-increasing spatial and temporal resolutions have led to the development of instruments such as the ultrafast transmission electron microscope (UEM) that can capture transient processes with combined nanometer and picosecond resolutions. However, analysis by UEM is often associated with extended acquisition times, mainly due to the limitations of the electron gun. Improvements are hampered by tradeoffs in realizing combinations of the conflicting objectives for source size, emittance, and energy and temporal dispersion. Fundamentally, the performance of the gun is a function of the cathode material, the gun and cathode geometry, and the local fields. Especially shank emission from a truncated tip cathode results in severe broadening effects and therefore such electrons must be filtered by applying a Wehnelt bias. Here we study the influence of the cathode geometry and the Wehnelt bias on the performance of a photoelectron gun in a thermionic configuration. We combine experimental analysis with finite element simulations tracing the paths of individual photoelectrons in the relevant 3D geometry. Specifically, we compare the performance of guard ring cathodes with no shank emission to conventional truncated tip geometries. We find that a guard ring cathode allows operation at minimum Wehnelt bias and improve the temporal resolution under realistic operation conditions in an UEM. At low bias, the Wehnelt exhibits stronger focus for guard ring than truncated tip cathodes. The increase in temporal spread with bias is mainly a result from a decrease in the accelerating field near the cathode surface. Furthermore, simulations reveal that the temporal dispersion is also influenced by the intrinsic angular distribution in the photoemission process and the initial energy spread. However, a smaller emission spot on the cathode is not a dominant driver for enhancing time resolution. Space charge induced temporal broadening shows a close to linear relation with the number of electrons up to at least 10 000 electrons per pulse. The Wehnelt bias will affect the energy distribution by changing the Rayleigh length, and thus the interaction time, at the crossover.

2.
Phys Rev E Stat Nonlin Soft Matter Phys ; 84(1 Pt 1): 011916, 2011 Jul.
Article in English | MEDLINE | ID: mdl-21867222

ABSTRACT

Electron crystallography of 2D protein crystals provides a powerful tool for the determination of membrane protein structure. In this method, data is acquired in the Fourier domain as randomly sampled, uncoupled, amplitudes and phases. Due to physical constraints on specimen tilting, those Fourier data show a vast un-sampled "missing cone" of information, producing resolution loss in the direction perpendicular to the membrane plane. Based on the flexible language of projection onto sets, we provide a full solution for these problems with a projective constraint optimization algorithm that, for sufficiently oversampled data, produces complete recovery of unmeasured data in the missing cone. We apply this method to an experimental data set of Bacteriorhodopsin and show that, in addition to producing superior results compared to traditional reconstruction methods, full, reproducible, recovery of the missing cone from noisy data is possible. Finally, we present an automatic implementation of the refinement routine as open source, freely distributed, software that will be included in our 2dx software package.


Subject(s)
Bacteriorhodopsins/chemistry , Cell Membrane/metabolism , Crystallography, X-Ray/methods , Membrane Proteins/chemistry , Algorithms , Automation , Computer Simulation , Electrons , Entropy , Fourier Analysis , Scattering, Radiation , Software
3.
Ultramicroscopy ; 111(3): 251-7, 2011 Feb.
Article in English | MEDLINE | ID: mdl-21333863

ABSTRACT

Quantitative analysis of point defects is demonstrated through the use of multivariate statistical analysis. This analysis consists of principal component analysis for dimensional estimation and reduction, followed by independent component analysis to obtain physically meaningful, statistically independent factor images. Results from these analyses are presented in the form of factor images and scores. Factor images show characteristic intensity variations corresponding to physical structure changes, while scores relate how much those variations are present in the original data. The application of this technique is demonstrated on a set of experimental images of dislocation cores along a low-angle tilt grain boundary in strontium titanate. A relationship between chemical composition and lattice strain is highlighted in the analysis results, with picometer-scale shifts in several columns measurable from compositional changes in a separate column.

5.
Microsc Res Tech ; 72(3): 122-30, 2009 Mar.
Article in English | MEDLINE | ID: mdl-19165740

ABSTRACT

The dynamic transmission electron microscope (DTEM) is introduced as a novel tool for in situ processing of materials. Examples of various types of dynamic studies outline the advantages and differences of laser-based heating in the DTEM in comparison to conventional (resistive) heating in situ TEM methods. We demonstrate various unique capabilities of the drive laser, namely, in situ processing of nanoscale materials, rapid and high temperature phase transformations, and controlled thermal activation of materials. These experiments would otherwise be impossible without the use of the DTEM drive laser. Thus, the potential of the DTEM as a new technique to process and characterize the growth of a myriad of micro and nanostructures is demonstrated.


Subject(s)
Lasers , Microscopy, Electron, Transmission/methods , Nanostructures/ultrastructure , Materials Testing , Microscopy, Electron, Transmission/instrumentation , Nanostructures/chemistry , Temperature
6.
J Colloid Interface Sci ; 321(2): 251-5, 2008 May 15.
Article in English | MEDLINE | ID: mdl-18329660

ABSTRACT

Cubically shaped cobalt oxide nanoparticle catalysts were used for the first time to investigate the melting of the nanoparticle catalysts responsible for the synthesis of silica nanocoils at 1050 degrees C and straight nanowires at 1100 degrees C. Cobalt nanoparticles remained morphologically highly anisotropic after the growth of nanocoils at 1050 degrees C, whereas they became predominately spherical after straight nanowires were made at 1100 degrees C. These results strongly indicated that cobalt nanoparticles responsible for the synthesis of straight nanowires were completely molten and that melting occurred to these nanoparticles between 1050 and 1100 degrees C.

7.
Chem Commun (Camb) ; (17): 2274-6, 2005 May 07.
Article in English | MEDLINE | ID: mdl-15856120

ABSTRACT

We present here the synthesis of silicon-based nanowires directly from silicon wafers at high temperatures and in the presence of cobalt nanoparticles and hydrogen gas. All three ingredients were critical to the growth of Si-based nanowires, which were between 5-60 nm in diameter and microm-mm long. Both heavily coiled and straight Si-based nanowires were made. Experimental evidence suggested that the sources of silicon for the nanowires growth were in the gas phase.

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