Phenotypical and molecular characterization of Acinetobacter spp. isolated from a pharmaceutical facility.

Characterizing microorganisms according to different criteria is useful when investigating sources of microbiological contamination in the pharmaceutical industry. The aim of this study was to characterize 38 Acinetobacter baumannii complex strains isolated from a biopharmaceutical industry by 16S rRNA sequencing, matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF/MS), multilocus sequence typing (MLST), antimicrobial susceptibility profile, biofilm formation, and sensibility to disinfectants. Thirty-three (86.9%) strains were identified by 16S rRNA gene sequencing as A. seifertii/pitti/nosocomialis/lactucae, four (10.5%) as A. baumannii, and one (2.6%) as A. vivianii/courvalini. MALDI-TOF/MS did not identify one strain, and incorrectly identified 30/37 (81.1%) strains as A. baumannii. Strains were assigned to 12 different STs, of which nine were newly defined in this study (STs 2091-2099). Twenty-six (68.4%) strains showed resistance to amikacin and gentamicin. Thirty-three (86.8%) strains were classified as moderately or strongly adherent on polystyrene. Alcohol 70%/15 min and quaternary ammonium 0.08%/20 min were not able to eliminate the biofilm formed, but sodium hypochlorite 0.1%/15 min was efficient. In conclusion, improved methods are needed to improve the identification of Acinetobacter strains in pharmaceutical industries. This organism is of particular concern as it forms recalcitrant biofilms, leading to persistence in the manufacturing environment and increased risk of product contamination.

Evaluation of MALDI-TOF MS, sequencing of D2 LSU rRNA and internal transcribed spacer regions (ITS) for the identification of filamentous fungi isolated from a pharmaceutical facility.

The identification of filamentous fungi through culture characterization may be hampered by phenotypic variability. Information obtained from the identification of microorganisms are important for investigation of sources of contamination of a product or process. The aim of this study was to identify filamentous fungal strains (n = 50) isolated from a pharmaceutical facility by using Matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS), as well as D2 domain of the large-subunit (LSU) ribosomal RNA gene and internal transcribed spacer regions (ITS) sequencing. MALDI-TOF MS system only identified five strains at the species level, while 45 were not identified. The analysis through GenBank allowed the identification of up to 19 strains at the species level, while MycoBank allowed the identification of up to nine strains at the species level. The databases identified up to 11 genera: Penicillium, Aspergillus, Cladosporium, Chaetomium, Coniochaeta, Curvularia, Diaporthe, Fusarium, Trichoderma, Rhizopus and Microdochium. MALDI-TOF MS showed an insufficient database to identify the species of fungi. DNA sequencing was the best methodology to identify to the genus level but was unable to differentiate between closely related species. Therefore further methods for the identification of filamentous fungi from pharmaceutical areas at species level need to be developed.

Identification of Sutcliffiella horikoshii strains in an immunobiological pharmaceutical industry facility.

The pharmaceutical industry must comply with the requirements for good manufacturing practices to reduce inherent contamination risks in the production process. Bacillus and related genera are among the main bacterial isolated from clean areas, raw material, and products in the pharmaceutical industries, but the correct identification of these species is still a challenge. The aim of this study was to characterize by phenotyping, protein profiling, and 16S rRNA gene sequencing Sutcliffiellahorikoshii strains (n = 6) isolated from an immunobiological pharmaceutical facility, and to propose the reclassification of Bacillus tianshenii to the genus Sutcliffiella, and Sutcliffiella tianshenii sp. nov. The strains were characterized by VITEK®2, matrix-assisted laser desorption ionization-time of flight/mass spectrometry (MALDI-TOF/MS) using VITEK®MS, and 16S rRNA gene sequencing analysis. MALDI-TOF/MS did not identify any strains that were identified by 16S rRNA as S. horikoshii. VITEK®2 showed false-positive results, with misidentification as B. sporothermodurans (reclassified as Heyndrickxia sporothermodurans) and Geobacillus thermoleovorans. After MALDI-TOF/MS database expansion, with the creation of SuperSpectrum, the strains were correctly identified as S. horikoshii. This study is the first report of isolation of S. horikoshii strains from a pharmaceutical industry. More studies are necessary to better understand the ability of S. horikoshii to contaminate the environment and products.

Evaluation of hydrogen peroxide virucidal efficacy against yellow fever virus 17DD vaccine strain for application in a vaccine manufacturing industry.

The aim of this study was to evaluate the inactivation performance of hydrogen peroxide to the yellow fever virus 17DD vaccine strain, used for the production of attenuated yellow fever vaccine, in two matrixes: formulated yellow fever vaccine (FYV) and yellow fever viral suspension - active pharmaceutical ingredient (API). The samples were dried on stainless steel and exposed to hydrogen peroxide liquid (HPL) at concentrations of 30, 10, 3 and 1% for 20 and 60 min; and to hydrogen peroxide vapour (HPV) in an isolator. The exposure to HPL 30 and 10 %, within 20 min, reduced the virus titre at least 3.85 log10 PFU/mL (74.8 %). During 60 min of exposure, the HPL 30, 10 and 3% reduced the virus titre by at least 3.18 log10 PFU/mL (62.6 %). HPV exposure resulted in complete virus inactivation in FYV (≥ 4.42 log10 PFU/mL reduction) and for API samples 3.17 log10 PFU/mL (64.3 %) reduction. Hydrogen peroxide showed to be a promising disinfectant for elimination of yellow fever virus. However, the optimum concentration and contact time will vary depending on the type of application, and as such may complement individual risk assessments of biological production processes.

Validation of PCR method for mycoplasma detection in the Yellow Fever-vaccine quality control / Validação de método de PCR para detecção de micoplasmas no controle de qualidade da vacina de Febre Amarela

Among the vaccines produced by Bio-Manguinhos, a major centre for manufacturing the immunobiological products in Latin America, stands out the yellow fever (YF) vaccine. To guarantee the excellence and safety of the YF vaccine, the quality control tests has to be performed throughout its production. The World Health Organization (WHO) demands the producers to guarantee the absence of Mycoplasma orale, M. pneumoniae, M. gallisepticum and M. synoviae in the biological products. Mycoplasma is a fastidious microorganism, requiring about 35 days for attaining the conclusive culturing test. In this study PCR methods were selected for amplifying 16S rRNA gene fragments for detecting mycoplasma in the intermediate products of YF vaccine. This standardized methodology was specific and sensitive to detect the low concentrations of mycoplasma in spiked intermediary vaccine products; and the absence of unspecific amplification was also demonstrated. The detection rates ranged from 3.1 to 12.5 colony forming units and showed 100 % of sensitivity and specificity in the tested samples. The PCR protocol for detecting mycoplasmal DNA in YF vaccine was validated by analysing 286 samples. Bio-Manguinhos produces annually 10,000,000 YF vaccine doses, and this method has been successfully employed, complementing the traditional approach in the mycoplasma detection since 2008.

Dentre as vacinas produzidas por Bio-Manguinhos, um importante centro de produção de imunobiológicos da América Latina, destaca-se a vacina de febre amarela (FA) que é produzida em ovos embrionados. Para garantir a excelência e a segurança da vacina, testes de controle de qualidade são realizados durante a produção. A Organização Mundial de Saúde (OMS) exige dos produtores a ausência de Mycoplasma orale, M. pneumoniae, M. gallisepticum e M. synoviae em produtos biológicos. Micoplasmas são micro-organismos fastidiosos, sendo necessários 35 dias para que os testes de cultura sejam conclusivos. Neste estudo foram selecionados métodos de amplificação de fragmentos do gene 16S rRNA para detecção de micoplasmas em produtos intermediários da vacina de FA. Esta metodologia padronizada foi capaz de detectar baixas concentrações de micoplasmas nos produtos intermediários e a ausência de amplificação inespecífica foi demonstrada. O limite de detecção variou entre 3,1 e 12,5 unidades formadoras de colônia; e nas amostras testadas a sensibilidade e a especificidade foram de 100 %. O protocolo de PCR para detecção de micoplasmas na vacina foi validado pela análise de 286 amostras. Bio-Manguinhos produz 10.000.000 doses de vacina de febre amarela por ano e, desde 2008, este método tem sido empregado com sucesso, complementando-se a abordagem tradicional.

Validation of PCR method for mycoplasma detection in the Yellow Fever-vaccine quality control / Validação de método de PCR para detecção de micoplasmasno controle de qualidade da vacina de Febre Amarela

Among the vaccines produced by Bio-Manguinhos, a major centre for manufacturingthe immunobiological products in Latin America, stands out the yellow fever (YF) vaccine.To guarantee the excellence and safety of the YF vaccine, the quality control tests has to be performedthroughout its production. The World Health Organization (WHO) demands the producersto guarantee the absence of Mycoplasma orale, M. pneumoniae, M. gallisepticum and M. synoviaein the biological products. Mycoplasma is a fastidious microorganism, requiring about 35 daysfor attaining the conclusive culturing test. In this study PCR methods were selected for amplifying16S rRNA gene fragments for detecting mycoplasma in the intermediate products of YF vaccine.This standardized methodology was specific and sensitive to detect the low concentrations of mycoplasma in spiked intermediary vaccine products; and the absence of unspecific amplification was also demonstrated. The detection rates ranged from 3.1 to 12.5 colony formingunits and showed 100 % of sensitivity and specificity in the tested samples. The PCR protocol for detecting mycoplasmal DNA in YF vaccine was validated by analysing 286 samples. Bio-Manguinhos produces annually 10,000,000 YF vaccine doses, and this method has been successfully employed, complementing the traditional approach in the mycoplasma detection since 2008.

Dentre as vacinas produzidas por Bio-Manguinhos, um importante centro de produção deimunobiológicos da América Latina, destaca-se a vacina de febre amarela (FA) que é produzidaem ovos embrionados. Para garantir a excelência e a segurança da vacina, testes de controlede qualidade são realizados durante a produção. A Organização Mundial de Saúde (OMS) exigedos produtores a ausência de Mycoplasma orale, M. pneumoniae, M. gallisepticum e M. synoviaeem produtos biológicos. Micoplasmas são micro-organismos fastidiosos, sendo necessários35 dias para que os testes de cultura sejam conclusivos. Neste estudo foram selecionadosmétodos de amplificação de fragmentos do gene 16S rRNA para detecção de micoplasmas emprodutos intermediários da vacina de FA. Esta metodologia padronizada foi capaz de detectarbaixas concentrações de micoplasmas nos produtos intermediários e a ausência de amplificaçãoinespecífica foi demonstrada. O limite de detecção variou entre 3,1 e 12,5 unidades formadorasde colônia; e nas amostras testadas a sensibilidade e a especificidade foram de 100 %. O protocolode PCR para detecção de micoplasmas na vacina foi validado pela análise de 286 amostras.Bio-Manguinhos produz 10.000.000 doses de vacina de febre amarela por ano e, desde 2008,este método tem sido empregado com sucesso, complementando-se a abordagem tradicional.

Kinetics of asparaginase II fermentation in Saccharomyces cerevisiae ure2dal80 mutant: effect of nitrogen nutrition and pH.

Although the quality of nitrogen source affects fermentation product formation, it has been managed empirically, to a large extent, in industrial scale. Laboratory-scale experiments successfully use the high-cost proline as a nonrepressive source. We evaluated urea as a substitute for proline in Saccharomyces cerevisiae ure2dal80 fermentations for asparaginase II production as a model system for nitrogen-regulated external enzymes. Maximum asparaginase II levels of 265 IU/L were observed in early stationary-phase cells grown on either proline or urea, whereas in ammonium cells, the maximum enzyme level was 157 IU/L. In all cases, enzyme stability was higher in buffered cultures with an initial pH of 6.5.