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1.
Mol Biol Cell ; 24(9): 1454-68, 2013 May.
Article in English | MEDLINE | ID: mdl-23485562

ABSTRACT

Promyelocytic leukemia nuclear bodies (PML-NBs)/nuclear domain 10s (ND10s) are nuclear structures that contain many transcriptional and chromatin regulatory factors. One of these, Sp100, is expressed from a single-copy gene and spliced into four isoforms (A, B, C, and HMG), which differentially regulate transcription. Here we evaluate Sp100 function in single cells using an inducible cytomegalovirus-promoter-regulated transgene, visualized as a chromatinized transcription site. Sp100A is the isoform most strongly recruited to the transgene array, and it significantly increases chromatin decondensation. However, Sp100A cannot overcome Daxx- and α-thalassemia mental retardation, X-linked (ATRX)-mediated transcriptional repression, which indicates that PML-NB/ND10 factors function within a regulatory hierarchy. Sp100A increases and Sp100B, which contains a SAND domain, decreases acetyl-lysine regulatory factor levels at activated sites, suggesting that Sp100 isoforms differentially regulate transcription by modulating lysine acetylation. In contrast to Daxx, ATRX, and PML, Sp100 is recruited to activated arrays in cells expressing the herpes simplex virus type 1 E3 ubiquitin ligase, ICP0, which degrades all Sp100 isoforms except unsumoylated Sp100A. The recruitment Sp100A(K297R), which cannot be sumoylated, further suggests that sumoylation plays an important role in regulating Sp100 isoform levels at transcription sites. This study provides insight into the ways in which viruses may modulate Sp100 to promote their replication cycles.


Subject(s)
Antigens, Nuclear/metabolism , Autoantigens/metabolism , Chromatin Assembly and Disassembly , Cytomegalovirus/physiology , Promoter Regions, Genetic , Acetylation , Adaptor Proteins, Signal Transducing/metabolism , Co-Repressor Proteins , DNA Helicases/metabolism , Epigenesis, Genetic , HeLa Cells , Humans , Molecular Chaperones , Nuclear Proteins/metabolism , Promyelocytic Leukemia Protein , Protein Isoforms/metabolism , Protein Transport , Proteolysis , Sumoylation , Transcription Factors/metabolism , Transcription Initiation Site , Transcription, Genetic , Tumor Suppressor Proteins/metabolism , Virus Latency , X-linked Nuclear Protein
2.
EMBO J ; 30(12): 2465-76, 2011 May 13.
Article in English | MEDLINE | ID: mdl-21572393

ABSTRACT

Microglia, the resident macrophages of the mammalian central nervous system, migrate to sites of tissue damage or infection and become activated. Although the persistent secretion of inflammatory mediators by the activated cells contributes to the pathogenesis of various neurological disorders, most activated microglia eventually undergo apoptosis through the process of activation-induced cell death (AICD). The molecular mechanism of AICD, however, has remained unclear. Here, we show that Daxx and mammalian Ste20-like kinase-1 (MST1) mediate apoptosis elicited by interferon-γ (IFN-γ) in microglia. IFN-γ upregulated the expression of Daxx, which in turn mediated the homodimerization, activation, and nuclear translocation of MST1 and apoptosis in microglial cells. Depletion of Daxx or MST1 by RNA interference also attenuated IFN-γ-induced cell death in primary rat microglia. Furthermore, the extent of IFN-γ-induced death of microglia in the brain of MST1-null mice was significantly reduced compared with that apparent in wild-type mice. Our results thus highlight new functions of Daxx and MST1 that they are the key mediators of microglial cell death initiated by the proinflammatory cytokine IFN-γ.


Subject(s)
Adaptor Proteins, Signal Transducing/physiology , Carrier Proteins/physiology , Hepatocyte Growth Factor/physiology , Intracellular Signaling Peptides and Proteins/physiology , Microglia/cytology , Microglia/physiology , Nuclear Proteins/physiology , Proto-Oncogene Proteins/physiology , Signal Transduction , Animals , Apoptosis/genetics , COS Cells , Carrier Proteins/genetics , Cell Death/genetics , Cell Survival/genetics , Cells, Cultured , Chlorocebus aethiops , Co-Repressor Proteins , Fibroblasts/cytology , Fibroblasts/physiology , HEK293 Cells , HeLa Cells , Hepatocyte Growth Factor/deficiency , Hepatocyte Growth Factor/genetics , Humans , Inflammation Mediators , Interferon-gamma/administration & dosage , Interferon-gamma/physiology , Intracellular Signaling Peptides and Proteins/deficiency , Intracellular Signaling Peptides and Proteins/genetics , Mice , Mice, Knockout , Molecular Chaperones , Nuclear Proteins/deficiency , Nuclear Proteins/genetics , Proto-Oncogene Proteins/deficiency , Proto-Oncogene Proteins/genetics , Rats , Rats, Sprague-Dawley , Signal Transduction/genetics
3.
Cancer Res ; 70(23): 9991-10001, 2010 Dec 01.
Article in English | MEDLINE | ID: mdl-21118961

ABSTRACT

Identifying the functions of proteins, which associate with specific subnuclear structures, is critical to understanding eukaryotic nuclear dynamics. Sp100 is a prototypical protein of ND10/PML nuclear bodies, which colocalizes with Daxx and the proto-oncogenic PML. Sp100 isoforms contain SAND, PHD, Bromo, and HMG domains and are highly sumoylated, all characteristics suggestive of a role in chromatin-mediated gene regulation. A role for Sp100 in oncogenesis has not been defined previously. Using selective Sp100 isoform-knockdown approaches, we show that normal human diploid fibroblasts with reduced Sp100 levels rapidly senesce. Subsequently, small rapidly dividing Sp100 minus cells emerge from the senescing fibroblasts and are found to be highly tumorigenic in nude mice. The derivation of these tumorigenic cells from the parental fibroblasts is confirmed by microsatellite analysis. The small rapidly dividing Sp100 minus cells now also lack ND10/PML bodies, and exhibit genomic instability and p53 cytoplasmic sequestration. They have also activated MYC, RAS, and TERT pathways and express mesenchymal to epithelial transdifferentiation (MET) markers. Reintroduction of expression of only the Sp100A isoform is sufficient to maintain senescence and to inhibit emergence of the highly tumorigenic cells. Global transcriptome studies, quantitative PCR, and protein studies, as well as immunolocalization studies during the course of the transformation, reveal that a transient expression of stem cell markers precedes the malignant transformation. These results identify a role for Sp100 as a tumor suppressor in addition to its role in maintaining ND10/PML bodies and in the epigenetic regulation of gene expression.


Subject(s)
Antigens, Nuclear/genetics , Autoantigens/genetics , Embryonic Stem Cells/metabolism , Fibroblasts/metabolism , Tumor Suppressor Proteins/genetics , Animals , Antigens, Nuclear/metabolism , Autoantigens/metabolism , Blotting, Western , Cell Transformation, Neoplastic/genetics , Cells, Cultured , Cellular Senescence/genetics , Epithelial-Mesenchymal Transition/genetics , Fibroblasts/cytology , Gene Expression Profiling , HEK293 Cells , Humans , Male , Mice , Mice, Nude , Neoplasms, Experimental/genetics , Neoplasms, Experimental/metabolism , Neoplasms, Experimental/pathology , Nuclear Proteins/metabolism , Oligonucleotide Array Sequence Analysis , Promyelocytic Leukemia Protein , Proto-Oncogene Proteins c-myc/metabolism , RNA Interference , Reverse Transcriptase Polymerase Chain Reaction , Transcription Factors/metabolism , Transplantation, Heterologous , Tumor Suppressor Proteins/metabolism , ras Proteins/metabolism
4.
Proc Natl Acad Sci U S A ; 107(7): 2938-43, 2010 Feb 16.
Article in English | MEDLINE | ID: mdl-20133701

ABSTRACT

Corepressors play an essential role in nuclear receptor-mediated transcriptional repression. In general, corepressors directly bind to nuclear receptors via CoRNR boxes (L/I-X-X-I/V-I) in the absence of ligand and appear to act as scaffolds to further recruit chromatin remodeling complexes to specific target genes. Here, we describe the identification of the multiple LIM domain protein Ajuba as a unique corepressor for a subset of nuclear hormone receptors. Ajuba contains functional nuclear-receptor interacting motifs and selectively interacts with retinoic acid receptors (RARs) and rexinoid receptor (RXRs) subtypes in a ligand-dependent manner. Simultaneous mutation of these motifs abolishes RAR binding and concomitantly leads to loss of repression on RARE reporter genes. P19 cells depleted of Ajuba are highly sensitized to all-trans retinoic acid (atRA)-induced transcription and differentiation. In the absence of atRA, Ajuba can be readily found at the RARE control elements of RAR endogenous target genes. Stimulation of cells with atRA results in the dissociation of Ajuba from these regions. Moreover, we observed that coexpression of the known Ajuba binding partner Prmt5 (protein arginine methyltransferase-5) inhibited the Ajuba/RAR interaction. The high-affinity Ajuba-RAR/RXR interaction site overlaps the region responsible for Ajuba/Prmt5 binding, and thus binding appears to be mutually exclusive, providing a potential mechanism for these observations. Identification of Ajuba as a unique corepressor for nuclear receptors sheds new light on mechanisms for nuclear receptor-mediated repression and provides a unique target for developing more effective therapeutics to modulate this important pathway.


Subject(s)
Co-Repressor Proteins/metabolism , Gene Expression Regulation/physiology , Homeodomain Proteins/metabolism , Receptors, Cytoplasmic and Nuclear/metabolism , Signal Transduction/physiology , Tretinoin/metabolism , Amino Acid Motifs/genetics , Amino Acid Motifs/physiology , Animals , Blotting, Western , Cell Line , Chromatin Immunoprecipitation , Humans , Immunoprecipitation , LIM Domain Proteins , Luciferases , Mice , Microscopy, Fluorescence , Protein Binding , Protein-Arginine N-Methyltransferases/metabolism , Receptors, Retinoic Acid/metabolism , Reverse Transcriptase Polymerase Chain Reaction
5.
J Virol ; 83(15): 7449-56, 2009 Aug.
Article in English | MEDLINE | ID: mdl-19458005

ABSTRACT

Macrophages are an important target cell for infection with cytomegalovirus (CMV). A number of viral genes that either are expressed specifically in this cell type or function to optimize CMV replication in this host cell have now been identified. Among these is the murine CMV (MCMV) US22 gene family member M140, a nonessential early gene whose deletion (RVDelta140) leads to significant impairment in virus replication in differentiated macrophages. We have now determined that the defect in replication is at the stage of viral DNA encapsidation. Although the rate of RVDelta140 genome replication and extent of DNA cleavage were comparable to those for revertant virus, deletion of M140 resulted in a significant reduction in the number of viral capsids in the nucleus, and the viral DNA remained sensitive to DNase treatment. These data are indicative of incomplete virion assembly. Steady-state levels of both the major capsid protein (M86) and tegument protein M25 were reduced in the absence of the M140 protein (pM140). This effect may be related to the localization of pM140 to an aggresome-like, microtubule organizing center-associated structure that is known to target misfolded and overexpressed proteins for degradation. It appears, therefore, that pM140 indirectly influences MCMV capsid formation in differentiated macrophages by regulating the stability of viral structural proteins.


Subject(s)
Capsid/metabolism , Macrophages/virology , Multigene Family , Muromegalovirus/physiology , Viral Proteins/metabolism , Virus Assembly , Animals , Cell Line , Gene Expression Regulation, Viral , Mice , Muromegalovirus/genetics , NIH 3T3 Cells , Viral Proteins/genetics , Virus Replication
6.
J Virol ; 83(10): 5168-80, 2009 May.
Article in English | MEDLINE | ID: mdl-19279115

ABSTRACT

Cells have intrinsic defenses against virus infection, acting before the innate or the adaptive immune response. Preexisting antiviral proteins such as PML, Daxx, and Sp100 are stored in specific nuclear domains (ND10). In herpes simplex virus type 1 (HSV-1), the immediate-early protein ICP0 serves as a counterdefense through degradation of the detrimental protein PML. We asked whether interferon (IFN)-upregulated Sp100 is similarly antagonized by ICP0 in normal human fibroblasts by using a selective-knockdown approach. We find that of the four Sp100 isoforms, the three containing a SAND domain block the transcription of HSV-1 proteins ICP0 and ICP4 at the promoter level and that IFN changes the differential splicing of the Sp100 transcript in favor of the inhibitor Sp100C. At the protein level, ICP0 activity does not lead to the hydrolysis of any of the Sp100 isoforms. The SAND domain-containing isoforms are not general inhibitors of viral promoters, as the activity of the major immediate-early cytomegalovirus promoter is not diminished, whereas the long terminal repeat of a retrovirus, like the ICP0 promoter, is strongly inhibited. Since we could not find a specific promoter region in the ICP0 gene that responds to the SAND domain-containing isoforms, we questioned whether Sp100 could act through other antiviral proteins such as PML. We find that all four Sp100 isoforms stabilize ND10 and protect PML from ICP0-based hydrolysis. Loss of either all PML isoforms or all Sp100 isoforms reduces the opposite constituent ND10 protein, suggesting that various interdependent mechanisms of ND10-based proteins inhibit virus infection at the immediate-early level.


Subject(s)
Antigens, Nuclear/metabolism , Autoantigens/metabolism , Genes, Immediate-Early , Herpesvirus 1, Human/genetics , Immediate-Early Proteins/metabolism , Nuclear Proteins/metabolism , Transcription Factors/metabolism , Tumor Suppressor Proteins/metabolism , Ubiquitin-Protein Ligases/metabolism , Cell Line , Gene Expression Regulation, Viral , Gene Knockdown Techniques , Herpesvirus 1, Human/metabolism , Humans , Interferons/metabolism , Promoter Regions, Genetic , Promyelocytic Leukemia Protein , Protein Isoforms/metabolism , Protein Splicing , Transcription, Genetic , Up-Regulation
7.
PLoS One ; 3(5): e2277, 2008 May 28.
Article in English | MEDLINE | ID: mdl-18509536

ABSTRACT

PML gene was discovered as a fusion partner with retinoic acid receptor (RAR) alpha in the t(15:17) chromosomal translocation associated with acute promyelocytic leukemia (APL). Nuclear PML protein has been implicated in cell growth, tumor suppression, apoptosis, transcriptional regulation, chromatin remodeling, DNA repair, and anti-viral defense. The localization pattern of promyelocytic leukemia (PML) protein is drastically altered during viral infection. This alteration is traditionally viewed as a viral strategy to promote viral replication. Although multiple PML splice variants exist, we demonstrate that the ratio of a subset of cytoplasmic PML isoforms lacking exons 5 & 6 is enriched in cells exposed to herpes simplex virus-1 (HSV-1). In particular, we demonstrate that a PML isoform lacking exons 5 & 6, called PML Ib, mediates the intrinsic cellular defense against HSV-1 via the cytoplasmic sequestration of the infected cell protein (ICP) 0 of HSV-1. The results herein highlight the importance of cytoplasmic PML and call for an alternative, although not necessarily exclusive, interpretation regarding the redistribution of PML that is seen in virally infected cells.


Subject(s)
Herpes Simplex/prevention & control , Nuclear Proteins/physiology , Transcription Factors/physiology , Tumor Suppressor Proteins/physiology , Animals , Cell Nucleus/metabolism , Humans , Immediate-Early Proteins/physiology , Mice , NIH 3T3 Cells , Nuclear Proteins/metabolism , Promyelocytic Leukemia Protein , Transcription Factors/metabolism , Tumor Suppressor Proteins/metabolism , Ubiquitin-Protein Ligases/physiology
8.
Med Microbiol Immunol ; 197(2): 241-9, 2008 Jun.
Article in English | MEDLINE | ID: mdl-18264718

ABSTRACT

The promise of the mouse model of cytomegalovirus (CMV) research lies in a cost effective way to obtain significant data in in vivo settings. Keeping that promise requires a high degree of equivalency in the human and mouse virus. While genomic structure and many common proteins suggest that this system is appropriate to develop and test concepts in an organismal context, areas of difference have not been evaluated. Here we show that the major immediate early protein 1 (IE1) in MCMV binds the repressor Daxx suggesting that it serves a function performed by pp71 in HCMV. A Daxx binding pp71 equivalent at M82 could not be identified for MCMV. Differences in the mouse and human interferon upregulation of Daxx may have driven the need to have a Daxx-defeating function during reactivation, when pp71 is not present. The major immediate early protein 1 also differs in its chromatin binding properties between the two viruses. MCMV IE1 does not bind to chromatin, but HCMV IE1 does. It remains unclear whether this difference is functionally significant. The HCMV major immediate early protein 2 and its MCMV equivalent IE3 differ in their effect on the cell cycle; HCMV IE2 blocks the cell cycle, but MCMV IE3 does not, allowing MCMV to spread in infected mouse cells by cell division with continued expression of the major transactivating viral proteins. Actively transcribing genomes inducing immediate transcript environments are usually silenced and diminish during cell cycle progression. However, a recognizable desilencing and increase in immediate transcript environments takes place immediately after mitosis in MCMV infected cells. This raises the possibility that desilencing happens during tissue transplantation, wound healing, or other injury where cells are induced to proliferate.


Subject(s)
Cytomegalovirus/physiology , Genes, Immediate-Early , Host-Pathogen Interactions , Muromegalovirus/physiology , Virus Replication , Animals , Humans , Mice
9.
J Virol ; 82(6): 2867-82, 2008 Mar.
Article in English | MEDLINE | ID: mdl-18199640

ABSTRACT

Herpesvirus lytic DNA replication requires both the cis-acting element, the origin, and trans-acting factors, including virally encoded origin-binding protein, DNA replication enzymes, and auxiliary factors. Two lytic DNA replication origins (ori-Lyt) of Kaposi's sarcoma-associated herpesvirus (KSHV) have been identified, and two virally encoded proteins, namely, RTA and K8, have been shown to bind to the origins. In this study, we sought to identify cellular factors that associate with ori-Lyt by using DNA affinity purification and mass spectrometry. This approach led to identification of several cellular proteins that bind to KSHV ori-Lyt. They include topoisomerases (Topo) I and II, MSH2/6, RecQL, poly(ADP-ribose) polymerase I (PARP-1), DNA-PK, Ku86/70 autoantigens, and scaffold attachment factor A (SAF-A). RecQL appears to associate with prereplication complexes and be recruited to ori-Lyt through RTA and K8. Topoisomerases, MSH2, PARP-1, DNA-PK, and Ku86 were not detected in prereplication complexes but were present in replication initiation complexes on ori-Lyt. All these cellular proteins accumulate in viral replication compartments in the nucleus, indicating that these proteins may have a role in viral replication. Topo I and II appear to be essential for viral DNA replication as inhibition of their activities with specific inhibitors (camptothecin and ellipticine) blocked ori-Lyt-dependent DNA replication. Furthermore, inhibition of PARP-1 with chemical inhibitors (3-aminobenzamide and niacinamide) resulted in decreased ori-Lyt-dependent DNA replication, whereas hydroxyurea, which raises PARP-1 activity, caused an increase in the DNA replication, suggesting a positive role for PARP-1 in KSHV lytic DNA replication.


Subject(s)
DNA Replication/physiology , DNA, Viral/biosynthesis , Herpesvirus 8, Human/physiology , Base Sequence , Blotting, Western , Cell Line, Tumor , Chromatin Immunoprecipitation , Chromatography, High Pressure Liquid , DNA Primers , DNA, Viral/isolation & purification , Electrophoresis, Polyacrylamide Gel , Fluorescent Antibody Technique , Herpesvirus 8, Human/genetics , Humans , Mutation , Tandem Mass Spectrometry
10.
J Virol ; 82(4): 1838-50, 2008 Feb.
Article in English | MEDLINE | ID: mdl-18057234

ABSTRACT

The extracellular signal-regulated kinase (ERK) mitogen-activated protein kinase (MAPK) pathway is essential for infection by a variety of viruses. The p90 ribosomal S6 kinases (RSKs) are direct substrates of ERK and functional mediators of ERK MAPK signaling, but their roles in viral infection have never been examined. We demonstrate that ORF45 of Kaposi's sarcoma-associated herpesvirus (KSHV) interacts with RSK1 and RSK2 and strongly stimulates their kinase activities. The activation of RSK by ORF45 is correlated with ERK activation but does not require MEK. We further demonstrate that RSK1/RSK2 is activated during KSHV primary infection and reactivation from latency; a subset of RSK1/RSK2 is present in the viral replication compartment in the nucleus. Depletion of RSK1/RSK2 by small interfering RNA or the specific inhibitor BI-D1870 suppresses KSHV lytic gene expression and progeny virion production, suggesting an essential role of RSK1/RSK2 in KSHV lytic replication.


Subject(s)
Herpesvirus 8, Human/physiology , Immediate-Early Proteins/metabolism , Ribosomal Protein S6 Kinases, 90-kDa/metabolism , Viral Proteins/metabolism , Virus Activation , Virus Replication , Cell Line , Cell Nucleus/enzymology , Cytoplasm/enzymology , Herpesvirus 8, Human/genetics , Humans , Immediate-Early Proteins/analysis , Immediate-Early Proteins/genetics , Phosphorylation , RNA Interference , Ribosomal Protein S6 Kinases, 90-kDa/analysis , Ribosomal Protein S6 Kinases, 90-kDa/genetics , Viral Proteins/analysis , Viral Proteins/genetics
11.
Mol Cell ; 28(5): 823-37, 2007 Dec 14.
Article in English | MEDLINE | ID: mdl-18082607

ABSTRACT

Tandem PHD and bromodomains are often found in chromatin-associated proteins and have been shown to cooperate in gene silencing. Each domain can bind specifically modified histones: the mechanisms of cooperation between these domains are unknown. We show that the PHD domain of the KAP1 corepressor functions as an intramolecular E3 ligase for sumoylation of the adjacent bromodomain. The RING finger-like structure of the PHD domain is required for both Ubc9 binding and sumoylation and directs modification to specific lysine residues in the bromodomain. Sumoylation is required for KAP1-mediated gene silencing and functions by directly recruiting the SETDB1 histone methyltransferase and the CHD3/Mi2 component of the NuRD complex via SUMO-interacting motifs. Sumoylated KAP1 stimulates the histone methyltransferase activity of SETDB1. These data provide a mechanistic explanation for the cooperation of PHD and bromodomains in gene regulation and describe a function of the PHD domain as an intramolecular E3 SUMO ligase.


Subject(s)
DNA-Binding Proteins/genetics , Gene Expression Regulation , Gene Silencing , RING Finger Domains , Repressor Proteins/genetics , Small Ubiquitin-Related Modifier Proteins/metabolism , Ubiquitin-Protein Ligases/metabolism , Adenosine Triphosphatases/genetics , Adenosine Triphosphatases/metabolism , Autoantigens/genetics , Autoantigens/metabolism , Bone Neoplasms/genetics , Bone Neoplasms/metabolism , Bone Neoplasms/pathology , Cells, Cultured , Chromatin/metabolism , DNA Helicases/genetics , DNA Helicases/metabolism , DNA-Binding Proteins/antagonists & inhibitors , DNA-Binding Proteins/metabolism , Histone Deacetylases/genetics , Histone Deacetylases/metabolism , Histone-Lysine N-Methyltransferase , Humans , Kidney/metabolism , Lysine/chemistry , Mi-2 Nucleosome Remodeling and Deacetylase Complex , Osteosarcoma/genetics , Osteosarcoma/metabolism , Osteosarcoma/pathology , Protein Methyltransferases/genetics , Protein Methyltransferases/metabolism , Protein Processing, Post-Translational , Repressor Proteins/antagonists & inhibitors , Repressor Proteins/metabolism , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/growth & development , Saccharomyces cerevisiae/metabolism , Transcription, Genetic , Tripartite Motif-Containing Protein 28 , Two-Hybrid System Techniques , Ubiquitin-Conjugating Enzymes/genetics , Ubiquitin-Conjugating Enzymes/metabolism , Ubiquitin-Protein Ligases/genetics
12.
Cancer Res ; 66(24): 11594-9, 2006 Dec 15.
Article in English | MEDLINE | ID: mdl-17178852

ABSTRACT

The DNA damage response requires a coordinated nucleo-cytoplasmic cascade of events, which ultimately converge on damaged DNA packaged in chromatin. Few connections between the proteins that remodel chromatin and the proteins that mediate this damage response have been shown. We have investigated the DNA damage-induced phosphorylation of the KRAB-ZFP-associated protein 1 (KAP1), the dedicated corepressor for Krüppel-associated box (KRAB) zinc finger protein (ZFP) proteins. We show that KAP1 is rapidly phosphorylated following DNA damage by members of the phosphatidylinositol-3 kinase-like family of kinases. This phosphorylation occurs at a single amino acid residue that is conserved from mice to humans and is located adjacent to the bromodomain, suggesting that it may regulate chromatin recognition by that module. Phosphorylated KAP1 rapidly localizes to sites of DNA strand breaks in the nucleus in response to ionizing radiation. This discovery provides a novel link between chromatin-mediated transcriptional repression and the recognition/repair of DNA, which must be accomplished by the cellular DNA damage response.


Subject(s)
DNA Damage , DNA-Binding Proteins/metabolism , Repressor Proteins/metabolism , Cell Division , Cell Line, Tumor , Cell Nucleus/metabolism , Culture Media , Genes, BRCA1 , Humans , Phosphorylation , Phosphoserine/metabolism , Substrate Specificity , Tripartite Motif-Containing Protein 28
13.
Mol Cell ; 24(3): 341-54, 2006 Nov 03.
Article in English | MEDLINE | ID: mdl-17081986

ABSTRACT

Small ubiquitin-like modifier (SUMO) modification has emerged as an important posttranslational control of protein functions. Daxx, a transcriptional corepressor, was reported to repress the transcriptional potential of several transcription factors and target to PML oncogenic domains (PODs) via SUMO-dependent interactions. The mechanism by which Daxx binds to sumoylated factors mediating transcriptional and subnuclear compartmental regulation remains unclear. Here, we define a SUMO-interacting motif (SIM) within Daxx and show it to be crucial for targeting Daxx to PODs and for transrepression of several sumoylated transcription factors, including glucocorticoid receptor (GR). In addition, the capability of Daxx SIM to bind SUMO also controls Daxx sumoylation. We further demonstrate that arsenic trioxide-induced sumoylation of PML correlates with a change of endogenous Daxx partitioning from GR-regulated gene promoter to PODs and a relief of Daxx repression on GR target gene expression. Our results provide mechanistic insights into Daxx in SUMO-dependent transcriptional control and subnuclear compartmentalization.


Subject(s)
Adaptor Proteins, Signal Transducing/metabolism , Carrier Proteins/metabolism , Cell Nucleus/metabolism , Intracellular Signaling Peptides and Proteins/metabolism , Nuclear Proteins/metabolism , Repressor Proteins/metabolism , Small Ubiquitin-Related Modifier Proteins/metabolism , Adaptor Proteins, Signal Transducing/chemistry , Amino Acid Motifs , Amino Acid Sequence , Animals , Arsenic Trioxide , Arsenicals/pharmacology , COS Cells , Carrier Proteins/chemistry , Chlorocebus aethiops , Co-Repressor Proteins , Dexamethasone/pharmacology , HeLa Cells , Humans , Intracellular Signaling Peptides and Proteins/chemistry , Mice , Molecular Chaperones , Molecular Sequence Data , Neoplasm Proteins/metabolism , Nuclear Proteins/chemistry , Oxides/pharmacology , Promyelocytic Leukemia Protein , Protein Binding , Protein Structure, Tertiary , Protein Transport , Receptors, Glucocorticoid/metabolism , Transcription Factors/metabolism , Transcription, Genetic/drug effects , Tumor Suppressor Proteins/metabolism
14.
J Virol ; 80(24): 12171-86, 2006 Dec.
Article in English | MEDLINE | ID: mdl-17020951

ABSTRACT

Lytic replication of Kaposi's sarcoma-associated herpesvirus (KSHV) is essential for viral propagation and pathogenicity. In Kaposi's sarcoma lesions, constant lytic replication plays a role in sustaining the population of latently infected cells that otherwise are quickly lost by segregation of latent viral episomes as spindle cells divide. Lytic DNA replication initiates from an origin (ori-Lyt) and requires trans-acting elements. Two functional ori-Lyts have been identified in the KSHV genome. Some cis-acting and trans-acting elements for ori-Lyt-dependent DNA replication have been found. Among these, K8 binding sites, a cluster of C/EBP binding motifs, and a replication and transcription activator (RTA) responsive element (RRE) are crucial cis-acting elements. Binding of K8 and RTA proteins to these motifs in ori-Lyt DNA was demonstrated to be absolutely essential for DNA replication. In the present study, functional roles of RTA in ori-Lyt-dependent DNA replication have been investigated. Two distinct functions of RTA were revealed. First, RTA activates an ori-Lyt promoter and initiates transcription across GC-rich tandem repeats. This RTA-mediated transcription is indispensable for DNA replication. Second, RTA is a component of the replication compartment, where RTA interacts with prereplication complexes composed of at least six core machinery proteins and K8. The prereplication complexes are recruited to ori-Lyt DNA through RTA, which interacts with the RRE, as well as K8, which binds to a cluster of C/EBP binding motifs with the aid of C/EBP alpha. The revelation of these two functions of RTA, together with its role in initiation of a transcriptional cascade that leads to transcription of all viral lytic genes, shows that RTA is a critical initiator and regulator of KSHV lytic DNA replication and viral propagation.


Subject(s)
Basic-Leucine Zipper Transcription Factors/genetics , DNA Replication/genetics , Herpesvirus 8, Human/genetics , Transcriptional Activation/genetics , Viral Proteins/genetics , Virus Replication/genetics , Amino Acid Sequence , Basic-Leucine Zipper Transcription Factors/metabolism , Blotting, Northern , Cell Line , DNA Primers , Immunoprecipitation , Molecular Sequence Data , Plasmids/genetics , Replication Origin/genetics , Viral Proteins/metabolism
15.
J Virol ; 80(16): 8019-29, 2006 Aug.
Article in English | MEDLINE | ID: mdl-16873258

ABSTRACT

Nuclear domains called ND10 or PML nuclear bodies contain interferon (IFN)-upregulated proteins like PML and Sp100. Paradoxically, herpes simplex virus 1 (HSV-1) begins its transcriptional cascade at aggregates of ND10-associated proteins, which in turn are destroyed by the HSV-1 immediate-early protein ICP0. While PML is essential in the formation of ND10, the function of Sp100 in the cells' defense against viral infection is unknown. In this study we investigated the potential antiviral effect of IFN-beta-induced Sp100. We found that IFN-beta treatment leads to a differential accumulation of four Sp100 isoforms in different cell lines. Using an HEK293 cell line derivative, 293-S, producing no detectable amounts of Sp100 even after IFN exposure, we analyzed individual Sp100 isoforms for their effect on HSV-1 infection. Sp100 isoforms B, C, and HMG, but not Sp100A, suppressed ICP0 and ICP4 early after infection. Isoforms B, C, and HMG suppressed expression from the ICP0 promoter in transient transfection, whereas Sp100A enhanced expression. Moreover, Sp100A localized in ND10, whereas the repressive isoforms were either dispersed within the nucleus or, at unphysiologically higher expression levels, formed new aggregates. The repressive activity was dependent on an intact SAND domain, since Sp100B bearing a W655Q mutation in the SAND domain lost this repressive activity and accumulated in ND10. Using RNA interference to knock down the repressive Sp100 isoforms B, C, and HMG, we find that they are an essential part of the IFN-beta-mediated suppression of ICP0 expression. These data suggest that repression by the Sp100 isoforms B, C, and HMG takes place outside of ND10 and raise the possibility that viral genomes at Sp100A accumulations are more likely to start their transcription program because of a more permissive local environment.


Subject(s)
Antigens, Nuclear/physiology , Autoantigens/physiology , Gene Expression Regulation, Viral , Herpesvirus 1, Human/drug effects , Immediate-Early Proteins/genetics , Interferon-beta/pharmacology , Nuclear Proteins/physiology , Repressor Proteins/physiology , Antigens, Nuclear/genetics , Autoantigens/genetics , Cell Line , Down-Regulation , Herpesvirus 1, Human/genetics , Herpesvirus 1, Human/metabolism , Humans , Immediate-Early Proteins/metabolism , Nuclear Proteins/agonists , Nuclear Proteins/genetics , Promoter Regions, Genetic , Protein Isoforms/agonists , Protein Isoforms/genetics , Protein Isoforms/physiology , Protein Structure, Tertiary , RNA Interference , Repressor Proteins/agonists , Repressor Proteins/genetics , Ubiquitin-Protein Ligases/genetics
16.
Arthritis Rheum ; 54(8): 2616-25, 2006 Aug.
Article in English | MEDLINE | ID: mdl-16868985

ABSTRACT

OBJECTIVE: Allograft inflammatory factor 1 (AIF-1), a protein initially identified in chronically rejected rat cardiac allografts, is involved in the immune response and proliferative vasculopathy that occurs during allograft rejection. Three well-characterized isoforms of AIF-1 result from alternative messenger RNA (mRNA) splicing. We previously identified a strong association of systemic sclerosis (SSc) with a polymorphism in AIF-1 isoform 2. The purpose of this study was to investigate AIF-1 expression in affected tissues from patients with SSc and to examine the regulation of its isoforms by transforming growth factor beta (TGFbeta). METHODS: AIF-1 in the skin and lung tissues of patients with SSc was analyzed by immunochemistry. AIF-1 isoform expression in response to TGFbeta and interferon-gamma stimulation was examined by quantitative polymerase chain reaction (PCR). RESULTS: AIF-1 protein was present in affected vessels of the lung and skin lesions of patients with SSc. Quantitative PCR showed an average of 14-fold higher mRNA levels in affected SSc skin than in normal skin. Double-label immunofluorescence staining demonstrated that T cells, macrophages, and endothelial cells in affected tissues expressed AIF-1. Stimulation of peripheral blood mononuclear cells with TGFbeta caused a specific and significant increase in the expression of AIF-1 isoform 2 transcripts (P < 0.005), which was due to stabilization of AIF-1 isoform 2 mRNA. CONCLUSION: These data suggest that AIF-1 plays an important role in the pathogenesis of SSc owing to its increased expression in affected tissues and to the specific stimulation of AIF-1 isoform 2 by TGFbeta.


Subject(s)
DNA-Binding Proteins/metabolism , Leukocytes, Mononuclear/drug effects , Nuclear Proteins , Scleroderma, Systemic/metabolism , Transforming Growth Factor beta/pharmacology , Calcium-Binding Proteins , Cells, Cultured , DNA-Binding Proteins/genetics , Drug Combinations , Endothelial Cells/metabolism , Endothelial Cells/pathology , Endothelium, Vascular/metabolism , Endothelium, Vascular/pathology , Fibroblasts/drug effects , Fibroblasts/metabolism , Fluorescent Antibody Technique, Indirect , Gene Expression , Humans , Interferon-gamma/pharmacology , Leukocytes, Mononuclear/metabolism , Lung/metabolism , Lung/pathology , Macrophages/metabolism , Macrophages/pathology , Microfilament Proteins , Protein Isoforms , RNA Processing, Post-Transcriptional , RNA, Messenger/metabolism , Reverse Transcriptase Polymerase Chain Reaction , Scleroderma, Systemic/pathology , Skin/metabolism , Skin/pathology , T-Lymphocytes/metabolism , T-Lymphocytes/pathology
17.
J Virol ; 80(14): 6873-82, 2006 Jul.
Article in English | MEDLINE | ID: mdl-16809293

ABSTRACT

Murine cytomegalovirus (MCMV) and human CMV (HCMV) share many features making the mouse system a potential small-animal model for HCMV. Although the genomic DNA sequence and the predicted open reading frames (ORFs) of MCMV have been determined, experimental evidence that the ORFs are actually transcribed has been lacking. We developed an MCMV global-DNA microarray that includes all previously predicted ORFs and 14 potential ones. A total of 172 ORFs were confirmed to be transcribed, including 7 newly discovered ORFs not previously predicted. No gene products from 10 previously predicted ORFs were detected by either DNA microarray analysis or reverse transcriptase PCR in MCMV-infected mouse fibroblasts, although 2 of those were expressed in a macrophage cell line, suggesting that potential gene products from these open reading frames are silenced in fibroblasts and required in macrophages. Immunohistochemical localization of the six newly described ORF products and three recently identified ones in cells transfected with the respective construct revealed four of the products in the nucleus and five in mitochondria. Analysis of two ORFs using site-directed mutagenesis showed that deletion of one of the mitochondrion-localized gene products led to significantly decreased replication in fibroblasts.


Subject(s)
Genes, Viral/genetics , Muromegalovirus/genetics , Open Reading Frames/genetics , Transcription, Genetic/genetics , Animals , Cell Nucleus/genetics , Cell Nucleus/immunology , Cell Nucleus/virology , Cytomegalovirus/genetics , Cytomegalovirus/immunology , Gene Expression Profiling , Gene Silencing , Genes, Viral/immunology , Humans , Immunohistochemistry , Mice , Mitochondria/genetics , Mitochondria/immunology , Mitochondria/virology , Muromegalovirus/immunology , NIH 3T3 Cells , Oligonucleotide Array Sequence Analysis , Open Reading Frames/immunology , Transcription, Genetic/immunology , Virus Replication/genetics , Virus Replication/immunology
18.
J Virol ; 80(15): 7510-21, 2006 Aug.
Article in English | MEDLINE | ID: mdl-16840331

ABSTRACT

Strong species specificity and similar tropisms suggest mouse cytomegalovirus (mCMV) as a potential vector for transgenes into human cells. We reexamined the dogma that mouse cytomegalovirus cannot productively replicate in human cells and found that mouse cytomegalovirus can produce infectious particles albeit at a level that does not sustain an infection. This finding demonstrates that mouse cytomegalovirus can undergo all processes of its life cycle in human cells but may not be well adapted to circumvent the human cell's intrinsic defenses. The suppression of mCMV production in human cells is affected at several levels, which additively or synergistically result in the appearance of species specificity. Hydrolysis of most newly replicated viral DNA and very low capsid protein transcription reduced the potential particle production to insignificant levels. These effects can be ameliorated by adding human cytomegalovirus tegument proteins and immediate-early protein 1. They function synergistically to produce significant amounts of mCMV in human cells. While the possibility that mouse cytomegalovirus might replicate in human cells raises caution in the use of this virus as a transgene vector, manipulation of the mouse cytomegalovirus genome to allow limited spread to other human cells might also provide an advantage for the distribution of certain transgenic products.


Subject(s)
Capsid Proteins/metabolism , DNA Replication , DNA, Viral/genetics , Herpesviridae Infections/virology , Immediate-Early Proteins/metabolism , Muromegalovirus/physiology , Viral Proteins/metabolism , Virus Replication/genetics , Animals , Capsid Proteins/genetics , Fibroblasts/virology , HeLa Cells/virology , Humans , Immediate-Early Proteins/genetics , Immunoblotting , In Situ Hybridization, Fluorescence , Mice , NIH 3T3 Cells/virology , Reverse Transcriptase Polymerase Chain Reaction , Skin/virology , Species Specificity , Transcription, Genetic , Viral Proteins/genetics
19.
Proc Natl Acad Sci U S A ; 102(47): 16973-8, 2005 Nov 22.
Article in English | MEDLINE | ID: mdl-16287980

ABSTRACT

Small ubiquitin-like modifier (SUMO) modification is emerging as an important control in transcription regulation. Here, we show that CREB-binding protein (CBP), a versatile transcriptional coactivator for numerous transcription factors in response to diverse signaling events, can be modified by SUMO-1 at lysine residues 999, 1034, and 1057 both in vitro and in vivo. Mutation of the SUMO acceptor lysine residues either individually or in combination enhanced CBP transcriptional activity, and expression of a SUMO protease SENP2 potentiated the transcriptional activity of CBP wild-type but not its sumoylation mutant, indicating that SUMO modification negatively regulates CBP transcriptional activity. Furthermore, we demonstrated an interaction of SUMO-1-modified CBP with the transcriptional corepressor Daxx and an essential role of Daxx in mediating SUMO-dependent transcriptional regulation of CBP through histone deacetylase 2 recruitment. Together, our findings indicate that SUMO modification and subsequent recruitment of Daxx represent a previously undescribed mechanism in modulating CBP transcriptional potential.


Subject(s)
CREB-Binding Protein/antagonists & inhibitors , Carrier Proteins/metabolism , Down-Regulation/physiology , Intracellular Signaling Peptides and Proteins/metabolism , Nuclear Proteins/metabolism , SUMO-1 Protein/physiology , Animals , COS Cells , CREB-Binding Protein/genetics , CREB-Binding Protein/metabolism , Carrier Proteins/physiology , Chlorocebus aethiops , Co-Repressor Proteins , HeLa Cells , Humans , Intracellular Signaling Peptides and Proteins/physiology , Lysine/genetics , Lysine/metabolism , Mice , Molecular Chaperones , Nuclear Proteins/physiology , Transcription, Genetic/physiology
20.
Biochem Biophys Res Commun ; 331(4): 929-37, 2005 Jun 17.
Article in English | MEDLINE | ID: mdl-15882967

ABSTRACT

The HP1 proteins regulate epigenetic gene silencing by promoting and maintaining chromatin condensation. The HP1 chromodomain binds to methylated histone H3. More enigmatic is the chromoshadow domain (CSD), which mediates dimerization, transcription repression, and interaction with multiple nuclear proteins. Here we show that KAP-1, CAF-1 p150, and NIPBL carry a canonical amino acid motif, PxVxL, which binds directly to the CSD with high affinity. We also define a new class of variant PxVxL CSD-binding motifs in Sp100A, LBR, and ATRX. Both canonical and variant motifs recognize a similar surface of the CSD dimer as demonstrated by a panel of CSD mutants. These in vitro binding results were confirmed by the analysis of polypeptides found associated with nuclear HP1 complexes and we provide the first evidence of the NIPBL/delangin protein in human cells, a protein recently implicated in the developmental disorder, Cornelia de Lange syndrome. NIPBL is related to Nipped-B, a factor participating in gene activation by remote enhancers in Drosophila melanogaster. Thus, this spectrum of direct binding partners suggests an expanded role for HP1 as factor participating in promoter-enhancer communication, chromatin remodeling/assembly, and sub-nuclear compartmentalization.


Subject(s)
Amino Acid Motifs , Chromosomal Proteins, Non-Histone/metabolism , Nuclear Proteins/metabolism , Animals , Binding Sites , Cell Line , Chromobox Protein Homolog 5 , Chromosomal Proteins, Non-Histone/chemistry , Humans , Mass Spectrometry , Protein Binding
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