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1.
J Immunol ; 156(5): 1841-7, 1996 Mar 01.
Article in English | MEDLINE | ID: mdl-8596035

ABSTRACT

Binding of peptides to MHC class II Ag generates ligands for TCR of Th lymphocytes. We have identified a novel class of peptides bound to MHC class II: mannose 6- phosphate (Man-6-P) containing glycopeptides from lysosomal enzymes. These species were identified in the process of characterizing mannose 6-phosphate/insulin-like growth factor II (M-6-P/IGF-II) receptor binding to the surface of B lymphoblasts. Surface iodination and Man-6-P/IGF-II receptor affinity chromatography implicated MHC class II as a carrier of Man-6-P-modified oligosaccharides. These oligosaccharides were found to be primarily associated with the bound peptide. Peptides eluted from the Man-6-P/IGF-II receptor-binding fraction of immunoaffinity-purified MHC class II from the Swei cell line contained a sequence derived from the propiece of lysosomal acid lipase. Partial sequences were also obtained for peptides from other HLA-DR alleles but none of these were attributable to known proteins. This study defines a novel approach for isolating rare glycan-modified peptides from MHC class II and demonstrates that very large secondary modifications are tolerated in peptides bound to MHC class II.


Subject(s)
B-Lymphocytes/enzymology , Glycopeptides/chemistry , HLA-DR Antigens/metabolism , Lipase/chemistry , Lymphocyte Activation , Lysosomes/enzymology , Mannosephosphates/chemistry , Amino Acid Sequence , B-Lymphocytes/immunology , Carbohydrate Conformation , Cell Line , Glycopeptides/metabolism , HLA-DR Antigens/analysis , Humans , Mannosephosphates/metabolism , Membrane Glycoproteins/immunology , Molecular Sequence Data , Peptides/isolation & purification , Protein Binding/immunology , Receptor, IGF Type 2/metabolism
2.
Infect Immun ; 63(7): 2652-7, 1995 Jul.
Article in English | MEDLINE | ID: mdl-7790081

ABSTRACT

Mycobacterium leprae, the causative agent of leprosy, is an obligate intracellular pathogen. M. leprae can infect a variety of cells in vivo, including epithelial cells, muscle cells, and Schwann cells, in addition to macrophages. The ligand-receptor interactions important in the attachment and ingestion of M. leprae by these nonmacrophage cells remains unknown. Fibronectin (FN) significantly enhances both attachment and ingestion of M. leprae by epithelial and Schwann cell lines. We cloned an M. leprae FN binding protein (FN attachment protein [FAP]) distinct from the 85ABC complex which has been shown previously to bind FN. The FAP open reading frame predicts a protein of 29.5 kDa with a 39-amino-acid signal peptide and was previously described as an antigen in leprosy patients. M. leprae FAP has homologies in M. vaccae, M. avium, and M. tuberculosis, as determined by Southern blotting and direct peptide analysis. Both anti-FAP antibodies and an Escherichia coli-expressed recombinant protein significantly blocked M. leprae attachment and internalization by T-24, an epithelial cell line, and JS1, a Schwann cell line. These data suggest that FN can be a bridging opsonic ligand for attachment of mycobacteria to nonphagocytes and that FAP plays an important role in this process. This may be an important step in the initiation of M. leprae infection in vivo.


Subject(s)
Adhesins, Bacterial/genetics , Antigens, Bacterial/genetics , Bacterial Adhesion , Bacterial Proteins/genetics , Fibronectins/metabolism , Genes, Bacterial , Mycobacterium leprae/pathogenicity , Adhesins, Bacterial/metabolism , Amino Acid Sequence , Base Sequence , Cloning, Molecular , Epithelium/microbiology , Gene Expression , Molecular Sequence Data , Mycobacterium leprae/genetics , Oligonucleotide Probes/chemistry , RNA, Messenger/genetics , Schwann Cells/microbiology , Sequence Alignment , Sequence Homology, Amino Acid
3.
J Immunol ; 154(8): 3880-7, 1995 Apr 15.
Article in English | MEDLINE | ID: mdl-7535816

ABSTRACT

The molecular nature of tissue-specific Ags involved in MHC-restricted CTL responses is as yet undefined. To determine the specificity of these peptides, their function, and their possible relationship to allograft rejection, we have utilized human kidney-specific CD8+ CTL clones to screen reversed-phase HPLC (RP-HPLC)-separated self peptides presented by allo-class I molecules. One of these clones is HLA-A3-restricted and the other HLA-B62-restricted, lysing human kidney cell lines but not MHC identical B lymphoblastoid cells which express the appropriate HLA molecules. We have identified a biologically active RP-HPLC fraction containing self peptides eluted from affinity-purified MHC molecules from HLA-A3+ kidney. This peptide is not expressed in HLA-A3+ spleen. Similarly, a HLA-B62-associated peptide fraction was identified in kidney but not in spleen using the HLA-B62-restricted CTL clone. Sequence analysis of the biologically active fraction from HLA-A3 kidney revealed multiple peptides. Because of the ambiguity of the peptide sequence, a mixed peptide library corresponding to this sequence was synthesized that included the HLA-A3 binding motif. The biologically active peptide library was RP-HPLC fractionated and the fraction containing HLA-A3-restricted CTL activity was sequenced. The resulting sequence of the alloreactive HLA-A3-restricted peptide epitope is GPPGVTIVK. By using this unique strategy, we describe the successful isolation and sequencing of an antigenic peptide that is recognized by a human alloreactive kidney-specific CTL clone.


Subject(s)
HLA-A3 Antigen/immunology , Isoantigens/isolation & purification , Kidney/immunology , Oligopeptides/immunology , T-Lymphocytes, Cytotoxic/immunology , Amino Acid Sequence , Autoantigens/immunology , Cytotoxicity, Immunologic , Epitopes , Humans , In Vitro Techniques , Molecular Sequence Data , Oligopeptides/chemistry
4.
Proc Natl Acad Sci U S A ; 91(16): 7588-92, 1994 Aug 02.
Article in English | MEDLINE | ID: mdl-8052624

ABSTRACT

Enterokinase is a protease of the intestinal brush border that specifically cleaves the acidic propeptide from trypsinogen to yield active trypsin. This cleavage initiates a cascade of proteolytic reactions leading to the activation of many pancreatic zymogens. The full-length cDNA sequence for bovine enterokinase and partial cDNA sequence for human enterokinase were determined. The deduced amino acid sequences indicate that active two-chain enterokinase is derived from a single-chain precursor. Membrane association may be mediated by a potential signal-anchor sequence near the amino terminus. The amino terminus of bovine enterokinase also meets the known sequence requirements for protein N-myristoylation. The amino-terminal heavy chain contains domains that are homologous to segments of the low density lipoprotein receptor, complement components C1r and C1s, the macrophage scavenger receptor, and a recently described motif shared by the metalloprotease meprin and the Xenopus A5 neuronal recognition protein. The carboxyl-terminal light chain is homologous to the trypsin-like serine proteases. Thus, enterokinase is a mosaic protein with a complex evolutionary history. The amino acid sequence surrounding the amino terminus of the enterokinase light chain is ITPK-IVGG (human) or VSPK-IVGG (bovine), suggesting that single-chain enterokinase is activated by an unidentified trypsin-like protease that cleaves the indicated Lys-Ile bond. Therefore, enterokinase may not be the "first" enzyme of the intestinal digestive hydrolase cascade. The specificity of enterokinase for the DDDDK-I sequence of trypsinogen may be explained by complementary basic-amino acid residues clustered in potential S2-S5 subsites.


Subject(s)
Enteropeptidase/genetics , Amino Acid Sequence , Animals , Base Sequence , Binding Sites/genetics , Cattle , Cloning, Molecular , DNA, Complementary/genetics , Digestion/physiology , Enteropeptidase/metabolism , Humans , Intestines/physiology , Membrane Proteins/genetics , Molecular Sequence Data , Sequence Analysis , Sequence Homology, Amino Acid , Structure-Activity Relationship
5.
J Virol ; 68(8): 5063-73, 1994 Aug.
Article in English | MEDLINE | ID: mdl-7518529

ABSTRACT

The hepatitis C virus (HCV) H strain polyprotein is cleaved to produce at least nine distinct products: NH2-C-E1-E2-NS2-NS3-NS4A-NS4B-NS5A-NS5B-CO OH. In this report, a series of C-terminal truncations and fusion with a human c-myc epitope tag allowed identification of a tenth HCV-encoded cleavage product, p7, which is located between the E2 and NS2 proteins. As determined by N-terminal sequence analysis, p7 begins with position 747 of the HCV H strain polyprotein. p7 is preceded by a hydrophobic sequence at the C terminus of E2 which may direct its translocation into the endoplasmic reticulum, allowing cleavage at the E2/p7 site by host signal peptidase. This hypothesis is supported by the observation that cleavage at the E2/p7 and p7/NS2 sites in cell-free translation studies was dependent upon the addition of microsomal membranes. However, unlike typical cotranslational signal peptidase cleavages, pulse-chase experiments indicate that cleavage at the E2/p7 site is incomplete, leading to the production of two E2-specific species, E2 and E2-p7. Possible roles of p7 and E2-p7 in the HCV life cycle are discussed.


Subject(s)
Hepacivirus/metabolism , Protein Processing, Post-Translational , Viral Proteins/metabolism , Amino Acid Sequence , Cell Line , Cell-Free System , Epitopes , Humans , Kinetics , Microsomes/ultrastructure , Molecular Sequence Data , Sequence Homology, Amino Acid , Viral Envelope Proteins/metabolism , Viral Nonstructural Proteins/metabolism
6.
J Virol ; 68(6): 3794-802, 1994 Jun.
Article in English | MEDLINE | ID: mdl-8189517

ABSTRACT

Several of the cleavages required to generate the mature nonstructural proteins from the flaviviral polyprotein are known to be mediated by a complex consisting of NS2B and a serine proteinase domain located in the N-terminal one-third of NS3. These cleavages typically occur after two basic residues followed by a short side chain residue. Cleavage at a similar dibasic site in the structural region is believed to produce the C terminus of the virion capsid protein. To study this cleavage, we developed a cell-free trans cleavage assay for yellow fever virus (YF)-specific proteolytic activity by using a substrate spanning the C protein dibasic site. Cleavage at the predicted site was observed when the substrate was incubated with detergent-solubilized lysates from YF-infected BHK cells. NS2B and the NS3 proteinase domain were the only YF-specific proteins required for this cleavage. Cell fractionation studies demonstrated that the YF-specific proteolytic activity was membrane associated and that activity could be detected only after detergent solubilization. Previous cell-free studies led to a hypothesis that processing in the C-prM region involves (i) translation of C followed by translocation and core glycosylation of prM by using an internal signal sequence, (ii) signalase cleavage to produce a membrane-anchored form of the C protein (anchC) and the N terminus of prM, and (iii) NS2B-3-mediated cleavage at the anchC dibasic site to produce the C terminus of the virion C protein. However, the results of in vivo transient-expression studies do not support this temporal cleavage order. Rather, expression of a YF polyprotein extending from C through the N-terminal one-third of NS3 revealed that C-prM processing, but not translocation, was dependent on an active NS2B-3 proteinase. This suggests that signalase-mediated cleavage in the lumen of the endoplasmic reticulum may be dependent on prior cleavage at the anchC dibasic site. Possible pathways for processing in the C-prM region are outlined and discussed.


Subject(s)
Endopeptidases/metabolism , Viral Nonstructural Proteins/metabolism , Yellow fever virus/metabolism , Amino Acid Sequence , Animals , Binding Sites , Capsid/genetics , Capsid/metabolism , Cell Line , Cricetinae , Endopeptidases/genetics , Models, Biological , Molecular Sequence Data , Protein Processing, Post-Translational , Substrate Specificity , Viral Nonstructural Proteins/genetics , Viral Proteins/genetics , Viral Proteins/metabolism , Yellow fever virus/genetics
7.
J Biol Chem ; 269(9): 6753-8, 1994 Mar 04.
Article in English | MEDLINE | ID: mdl-8120035

ABSTRACT

The hemostatic functions of human von Willebrand Factor (vWF) depend on the normal assembly of disulfide-linked multimers from approximately 250-kDa subunits. Subunits initially form dimers through disulfide bonds near the COOH terminus. Dimers then form multimers through disulfide bonds near the NH2 terminus of each subunit. Previous studies of plasma vWF and recombinant vWF fragments indicate that 1 or more of the Cys residues at position 459, 462, and 464 form intersubunit disulfide bonds. No evidence has been reported that vWF multimer formation involves additional intersubunit bonds. To probe the disulfide bond requirements for multimer formation, mutant vWF proteins were expressed in which all 3 Cys residues at positions 459, 462, and 464 were changed to either Gly or Ala. Surprisingly, none of these cysteines appears to be necessary for efficient multimer assembly. Furthermore, recombinant vWF with Gly or Ala at all three positions induces platelet aggregation in the presence of ristocetin and binds to platelet glycoprotein Ib, factor VIII, and collagen in a manner similar to wild-type recombinant vWF. These results suggest that other intersubunit disulfide bonds must exist. Direct evidence for such a bond was obtained by characterization of tryptic fragments of vWF. By Edman degradation, amino acid composition, and mass spectrometry, a disulfide bond was demonstrated between Cys379 residues of adjacent vWF subunits. Thus, intersubunit disulfide bonds involving Cys379 and 1 or more of the Cys residues at positions 459, 462, and 464 connect the NH2-terminal ends of the vWF subunits in a parallel orientation.


Subject(s)
Disulfides/metabolism , Protein Processing, Post-Translational , Protein Structure, Secondary , von Willebrand Factor/biosynthesis , von Willebrand Factor/chemistry , Amino Acid Sequence , Animals , Base Sequence , Blood Platelets/drug effects , Blood Platelets/metabolism , Cell Line , Collagen/metabolism , Crotalid Venoms/pharmacology , DNA, Complementary/metabolism , Electrophoresis, Polyacrylamide Gel , Factor VIII/metabolism , Humans , Kinetics , Macromolecular Substances , Models, Structural , Molecular Sequence Data , Molecular Weight , Oligodeoxyribonucleotides , Peptide Fragments/chemistry , Peptide Fragments/isolation & purification , Protein Binding , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Restriction Mapping , Transfection , von Willebrand Factor/isolation & purification
8.
Proc Natl Acad Sci U S A ; 90(22): 10583-7, 1993 Nov 15.
Article in English | MEDLINE | ID: mdl-8248148

ABSTRACT

Host and viral proteinases are believed to be required for the production of at least nine hepatitis C virus (HCV)-specific polyprotein cleavage products. Although several cleavages appear to be catalyzed by host signal peptidase or the HCV NS3 serine proteinase, the enzyme responsible for cleavage at the 2/3 site has not been identified. In this report, we have defined the 2/3 cleavage site and obtained evidence which suggests that this cleavage is mediated by a second HCV-encoded proteinase, located between aa 827 and 1207. This region encompasses the C-terminal portion of the 23-kDa NS2 protein, the 2/3 cleavage site, and the serine proteinase domain of NS3. Efficient processing at the 2/3 site was observed in mammalian cells, Escherichia coli, and in plant or animal cell-free translation systems in the absence of microsomal membranes. Cleavage at the 2/3 site was abolished by alanine substitutions for NS2 residues His-952 or Cys-993 but was unaffected by several other substitution mutations, including those that inactivate NS3 serine proteinase function. Mutations abolishing cleavage at the 2/3 site did not block cleavage at other sites in the HCV polyprotein. Cotransfection experiments indicate that the 2/3 site can be cleaved in trans, which should facilitate purification and further characterization of this enzyme.


Subject(s)
Endopeptidases/metabolism , Hepatitis C/enzymology , Protein Precursors/metabolism , Viral Nonstructural Proteins/metabolism , Amino Acid Sequence , Base Sequence , Cell-Free System , DNA Primers/chemistry , Escherichia coli , Molecular Sequence Data , Mutagenesis, Site-Directed , Protein Processing, Post-Translational , Structure-Activity Relationship
9.
J Virol ; 67(5): 2832-43, 1993 May.
Article in English | MEDLINE | ID: mdl-8386278

ABSTRACT

Processing of the hepatitis C virus (HCV) H strain polyprotein yields at least nine distinct cleavage products: NH2-C-E1-E2-NS2-NS3-NS4A-NS4B-NS5A-NS5B-CO OH. As described in this report, site-directed mutagenesis and transient expression analyses were used to study the role of a putative serine proteinase domain, located in the N-terminal one-third of the NS3 protein, in proteolytic processing of HCV polyproteins. All four cleavages which occur C terminal to the proteinase domain (3/4A, 4A/4B, 4B/5A, and 5A/5B) were abolished by substitution of alanine for either of two predicted residues (His-1083 and Ser-1165) in the proteinase catalytic triad. However, such substitutions have no observable effect on cleavages in the structural region or at the 2/3 site. Deletion analyses suggest that the structural and NS2 regions of the polyprotein are not required for the HCV NS3 proteinase activity. NS3 proteinase-dependent cleavage sites were localized by N-terminal sequence analysis of NS4A, NS4B, NS5A, and NS5B. Sequence comparison of the residues flanking these cleavage sites for all sequenced HCV strains reveals conserved residues which may play a role in determining HCV NS3 proteinase substrate specificity. These features include an acidic residue (Asp or Glu) at the P6 position, a Cys or Thr residue at the P1 position, and a Ser or Ala residue at the P1' position.


Subject(s)
Hepacivirus/genetics , Protein Precursors/metabolism , Protein Processing, Post-Translational , Viral Nonstructural Proteins/metabolism , Amino Acid Sequence , Animals , Base Sequence , Cells, Cultured , Hepacivirus/enzymology , Humans , Molecular Sequence Data , Mutagenesis, Site-Directed , RNA Helicases , Recombinant Proteins/metabolism , Sequence Analysis , Sequence Homology, Amino Acid , Serine Endopeptidases , Vaccinia virus/genetics , Viral Nonstructural Proteins/genetics
10.
Biochem J ; 290 ( Pt 3): 873-84, 1993 Mar 15.
Article in English | MEDLINE | ID: mdl-8457215

ABSTRACT

Osteoclasts degrade bone matrix, which is mainly type I collagen and hydroxyapatite, in an acidic extracellular compartment. Thus we reasoned that osteoclasts must produce an acid collagenase. We purified this enzyme, a 31 kDa protein, from avian osteoclast lysates (in 100 mM acetate/1 mM CHAPS/1 mM dithiothreitol, pH 4.4), fractionated by (NH2)2SO4 precipitation, gelatin-affinity, cation exchange, and gel filtration. Fraction activity was measured using diazotized collagen or 3H-labelled cross-linked collagen (decalcified and trypsin-treated metabolically L-[4,5-3H]proline-labelled bone) as substrates. Iodoacetate, leupeptin, antipain, pepstatin and mercurials inhibited collagenolysis by the isolated proteinase; mercurial derivatives could not be re-activated by dithiothreitol. Collagen degradation was maximal at pH 4.4; purified proteinase reproduced the collagenolytic activity of cell lysates. The N-terminal amino acid sequence from the isolated protein and its CNBr degradation fragments showed sequence similarity to mammalian cathepsin Bs, and near-identity with avian liver cathepsin B. Peptide substrate specificity of the osteoclastic enzyme resembled those of mammalian cathepsin B and its avian liver counterpart, but degradation of low-molecular-mass substrates by the osteoclastic enzyme was slower, reflecting generally lower kcat. values. Further, kcat/Km varied less between arginine-containing substrates than for previously reported cathepsin Bs, indicating different substrate specificity of the osteoclast enzyme. Polyclonal antibody raised to a 25 kDa fragment of the enzyme recognized a single 31 kDa band in SDS/PAGE of osteoclast lysates blotted to poly(vinylidene difluoride), adsorbed collagenolytic activity of osteoclast lysates, and stained avian osteoclasts in tissue sections. Degenerate sense- and antisense-oligonucleotide primers, predicted from segments of primary amino acid sequence, amplified a 486 bp DNA fragment; this was cloned and sequenced. Of 162 amino acids encoded, 77% are identical with those of human cathepsin B; hybridization identified a 2.4 kb RNA in osteoclast lysates. We conclude that the major avian osteoclast collagenolytic enzyme is a cathepsin B, whose activity varies from other enzymes of its class.


Subject(s)
Collagenases/isolation & purification , Extracellular Matrix/metabolism , Osteoclasts/enzymology , Amino Acid Sequence , Animals , Base Sequence , Bone Matrix/metabolism , Cathepsin B/chemistry , Cathepsin B/genetics , Chickens , Chromatography , Collagenases/metabolism , DNA/chemistry , DNA/isolation & purification , Dithiothreitol/pharmacology , Female , Humans , Hydrogen-Ion Concentration , Molecular Sequence Data , Nucleic Acid Hybridization , Peptide Fragments/chemistry , Peptide Fragments/metabolism , Sequence Homology, Amino Acid
11.
Hear Res ; 64(2): 191-8, 1993 Jan.
Article in English | MEDLINE | ID: mdl-8432690

ABSTRACT

Progress in amino acid sequencing of two low-molecular weight acidic proteins of unknown function which are present at high concentrations in the organ of Corti is reported. These two proteins, provisionally termed OCP1 and OCP2, were originally demonstrated by two-dimensional polyacrylamide gel electrophoresis; their presence at high concentrations in the inner ear sensory epithelia strongly suggests that OCP1 and OCP2 serve some important function in the ear. In the present paper, extension of the amino-terminal sequence of OCP2 to 71 residues is described. In addition, the first results on sequencing of OCP1 are presented. Computer algorithms are used to predict important structural features, and the sequences are analyzed for probable phosphorylation, glycosylation, and Ca-binding sites. Projected further studies in immunochemistry and molecular biology of OCP1 and OCP2 based on the amino acid sequencing data are discussed.


Subject(s)
Organ of Corti/chemistry , Proteins/chemistry , Amino Acid Sequence , Animals , Electrophoresis, Polyacrylamide Gel , Glycosylation , Guinea Pigs , Molecular Sequence Data , Organ of Corti/metabolism , Phosphorylation , Protein Structure, Secondary , Proteins/metabolism
12.
J Exp Med ; 176(3): 657-66, 1992 Sep 01.
Article in English | MEDLINE | ID: mdl-1512535

ABSTRACT

The major histocompatibility complex class II molecules are composed of two polymorphic chains which, in cells normally expressing them, transiently associate with a third, nonpolymorphic molecule, the invariant chain (Ii). To determine differences in the biology of class II molecules synthesized in the presence or absence of Ii, a comparative study was performed of BALB/c 3T3 cells that had been transfected with human class II HLA-DR molecules with or without cotransfection with human Ii. It was observed that in the absence of Ii, at least three high molecular weight proteins coimmunoprecipitate with HLA-DR molecules. These proteins did not coimmunoprecipitate with HLA-DR from cells cotransfected with Ii, nor did they coimmunoprecipitate with class I molecules from any of the transfectants. NH2-terminal sequence and/or Western blot analysis revealed the identity of two of the proteins as the endoplasmic reticulum (ER) resident stress proteins GRP94 and ERp72. Neither of these proteins was found to have an increased level of synthesis in the Ii- versus the Ii+ transfectants, indicating that their synthesis was not induced over constitutive levels. Fluorescence microscopy revealed that in the Ii- transfectants, the majority of the HLA-DR molecules were present in the ER, whereas in the Ii+ transfectants, the HLA-DR molecules were found in vesicular structures. We hypothesize that in the absence of Ii, ER resident stress proteins bind to class II molecules and retain them in the ER. This process, in turn, could prevent class II molecules from exiting the ER with endogenous peptides bound in their peptide binding cleft, and therefore could minimize autoimmune responses to endogenously processed self-peptides.


Subject(s)
Endoplasmic Reticulum/metabolism , HLA-DR Antigens/metabolism , HSP70 Heat-Shock Proteins , Heat-Shock Proteins/metabolism , 3T3 Cells , Amino Acid Sequence , Animals , Humans , Membrane Glycoproteins/metabolism , Membrane Proteins/metabolism , Mice , Microscopy, Fluorescence , Molecular Sequence Data , Molecular Weight , Precipitin Tests , Transfection
13.
Proc Natl Acad Sci U S A ; 89(16): 7380-3, 1992 Aug 15.
Article in English | MEDLINE | ID: mdl-1323833

ABSTRACT

A murine B-cell lymphoma bearing the class II major histocompatibility complex molecule I-Ak was cultured with the protein antigen hen egg white lysozyme (HEL). The I-Ak molecules were purified, and their associated peptides were extracted for characterization. Five HEL peptides were identified. Four contained the 10 amino acid residues HEL 52-61 (DYGILQINSR) but were heterogeneous in length and flanking residues. This core sequence is known to confer a high binding affinity for I-Ak. One additional peptide contained the amino acid residues HEL 48-60. These data demonstrate that the HEL epitope containing residues 52-61 is the most abundant HEL epitope presented on the major histocompatibility complex of the antigen-presenting cells and consequently explains its immunodominance.


Subject(s)
Histocompatibility Antigens Class II/metabolism , Muramidase/metabolism , Amino Acid Sequence , Animals , Binding Sites , Chickens , Chromatography, High Pressure Liquid , Female , Mice , Molecular Sequence Data , Peptide Fragments/isolation & purification , Protein Binding
14.
Arch Biochem Biophys ; 292(2): 402-10, 1992 Feb 01.
Article in English | MEDLINE | ID: mdl-1309971

ABSTRACT

Two protein inhibitors of metalloproteinases (TIMP) were isolated from medium conditioned by the clonal rat osteosarcoma line UMR 106-01. Initial purification of both a 30-kDa inhibitor and a 20-kDa inhibitor was accomplished using heparin-Sepharose chromatography with dextran sulfate elution followed by DEAE-Sepharose and CM-Sepharose chromatography. Purification of the 20-kDa inhibitor to homogeneity was completed with reverse-phase high-performance liquid chromatography. The 20-kDa inhibitor was identified as rat TIMP-2. The 30-kDa inhibitor, although not purified to homogeneity, was identified as rat TIMP-1. Amino terminal amino acid sequence analysis of the 30-kDa inhibitor demonstrated 86% identity to human TIMP-1 for the first 22 amino acids while the sequence of the 20-kDa inhibitor was identical to that of human TIMP-2 for the first 22 residues. Treatment with peptide:N-glycosidase F indicated that the 30-kDa rat inhibitor is glycosylated while the 20-kDa inhibitor is apparently unglycosylated. Inhibition of both rat and human interstitial collagenase by rat TIMP-2 was stoichiometric, with a 1:1 molar ratio required for complete inhibition. Exposure of UMR 106-01 cells to 10(-7) M parathyroid hormone resulted in approximately a 40% increase in total inhibitor production over basal levels.


Subject(s)
Glycoproteins/isolation & purification , Amino Acid Sequence , Animals , Cattle , Cell Line , Chromatography, Affinity , Chromatography, High Pressure Liquid , Chromatography, Ion Exchange , Electrophoresis, Polyacrylamide Gel , Glycoproteins/chemistry , Glycoproteins/pharmacology , Humans , Kinetics , Microbial Collagenase/antagonists & inhibitors , Molecular Sequence Data , Molecular Weight , Parathyroid Hormone/pharmacology , Rats , Sequence Homology, Nucleic Acid , Tissue Inhibitor of Metalloproteinases
15.
J Immunol ; 147(11): 4007-13, 1991 Dec 01.
Article in English | MEDLINE | ID: mdl-1940382

ABSTRACT

We previously demonstrated that the human anti-Haemophilus influenzae type b polysaccharide (Hib-PS) VL repertoire is dominated by a product of the V kappa II gene, A2, and that V kappa II-A2 anti-Hib-PS antibodies have little or no somatic mutation in VL. To further study this VL repertoire, we studied non-A2 anti-Hib-PS antibodies that were identified either serologically or by amino-terminal amino acid sequence analysis. Of 15 non-A2 anti-Hib-PS antibodies from 12 vaccinated adults, we found four V lambda, five V kappa I, one non-A2 V kappa II, four V kappa III, and one V kappa IV antibodies. As expected, all but two of these subjects also produced V kappa II-A2 antibodies. Interestingly, one of these subjects lacks the A2 gene in the germ line. However, both subjects who did not produce detectable V kappa II antibody did produce normal amounts of total anti-Hib-PS antibody after vaccination. Candidate V kappa genes for the non-A2 antibodies were identified by comparison of up to 60 VL amino acid residues, including CDR1 and CDR2, with all sequenced V kappa genes. V kappa I antibodies appear to be products of three newly sequenced V kappa I genes, O8, O18, and L11, that are reported here. The O8 and O18 genes encode identical amino acid sequences. The non-A2 V kappa II antibody is a likely product of the A1 or A17 genes, the V kappa III antibodies are likely products of the A27 gene, and the V kappa IV antibody is a product of the single V kappa IV gene, B3. Unlike V kappa II-A2 antibodies, the V kappa I, V kappa III, and V kappa IV antibodies differed by one to five CDR residues from the germ line product of the candidate genes, suggesting the presence of somatic mutations. Thus, anti-Hib-PS antibodies can be divided into two types, the most frequently observed A2 antibodies with little or no somatic mutation and non-A2 antibodies that likely contain somatic mutations.


Subject(s)
Antibodies, Bacterial/chemistry , Genes, Immunoglobulin , Haemophilus influenzae/immunology , Immunoglobulin Variable Region/genetics , Immunoglobulin kappa-Chains/genetics , Polysaccharides, Bacterial/immunology , Amino Acid Sequence , Antibodies, Bacterial/genetics , Antibody Diversity , Base Sequence , Clone Cells , Humans , Immunoglobulin G/chemistry , Immunoglobulin G/genetics , Immunoglobulin Variable Region/chemistry , Immunoglobulin kappa-Chains/chemistry , Molecular Sequence Data , Restriction Mapping
16.
J Exp Med ; 174(1): 243-51, 1991 Jul 01.
Article in English | MEDLINE | ID: mdl-2056278

ABSTRACT

The A/Japan/57 influenza hemagglutin (HA) peptide HA 128-145, when bound by human histocompatibility leukocyte antigen-DRw11 cells, is recognized by the human CD4+ T cell clone V1. A rabbit antiserum has been raised against HA 128-145 which recognizes not only the free peptide, but also the HA 128-145/DRw11 complex on a solid matrix, in solution, or on the surface of viable cells. The detection of these complexes on viable cells was shown to be class II specific, DRw11 restricted, and commensurate with the level of DRw11 expression. The identity of DRw11 as the cell surface molecule binding HA 128-145 was confirmed by immunoprecipitation, sodium dodecyl sulfate-polyacrylamide gel electrophoresis, and tryptic peptide mapping. Using this antiserum HA 128-145/DRw11 complexes could be detected on the cell surface as soon as 30 min after the peptide was added, and increased up to 24 h. Dissociation kinetics showed these complexes were long-lived, with a half-life of approximately 14 h. This anti-HA peptide antiserum represents the first direct means of studying antigenic peptide-human leukocyte antigen class II complexes on the surface of living cells without the addition of a non-amino acid moiety to the peptide. The properties of this antiserum thus provide the potential to study naturally processed antigenic peptides as well as the mechanism of processing itself in a physiologically relevant system.


Subject(s)
HLA-DR Antigens/immunology , Hemagglutinins, Viral/immunology , Influenza A virus/immunology , T-Lymphocytes/immunology , Amino Acid Sequence , Antibodies, Monoclonal , Antigen-Antibody Complex , CD4 Antigens/analysis , Cell Line , Clone Cells , Cytotoxicity, Immunologic , Enzyme-Linked Immunosorbent Assay , Flow Cytometry , HLA-DR Serological Subtypes , Hemagglutinin Glycoproteins, Influenza Virus , Humans , Immune Sera , Macromolecular Substances , Molecular Sequence Data , Peptides/chemical synthesis
17.
J Immunol ; 146(3): 920-7, 1991 Feb 01.
Article in English | MEDLINE | ID: mdl-1988503

ABSTRACT

It has been proposed that invariant chain (Ii), a nonpolymorphic, transmembrane glycoprotein found in noncovalent association with Ia molecules, may function to protect the Ia Ag-binding site from association with self-peptides during Ia synthesis. Selective binding of foreign antigenic peptides could then be allowed by the dissociation of Ii molecules from Ia in the appropriate intracellular compartment. In this study, we have examined the structure and intracellular trafficking patterns of a putative proteolytic product of Ii, p25. We found that p25 is a non-membrane-bound fragment of Ii with an N terminus beginning at Met98 of the Ii sequence. p25 is formed at a very early stage of Ii synthesis in the rough endoplasmic reticulum rather than in a post-Golgi Ag-processing compartment. We have also characterized a second Ii-related species, p28, which has not been reported previously. The p28 form of Ii, unlike p25, is generated under acidic conditions similar to those found during Ag processing.


Subject(s)
Antigens, Differentiation, B-Lymphocyte , Histocompatibility Antigens Class II/analysis , Peptide Fragments/analysis , Amino Acid Sequence , Animals , Histocompatibility Antigens Class II/metabolism , Mice , Pepstatins/pharmacology , Peptide Fragments/metabolism
18.
Proc Natl Acad Sci U S A ; 87(22): 8898-902, 1990 Nov.
Article in English | MEDLINE | ID: mdl-2147282

ABSTRACT

Sequence homology and molecular modeling studies have suggested that the N-terminal one-third of the flavirvirus nonstructural protein NS3 functions as a trypsin-like serine protease. To examine the putative proteolytic activity of NS3, segments of the yellow fever virus genome were subcloned into plasmid transcription/translation vectors and cell-free translation products were characterized. The results suggest that a protease activity encoded within NS2B and the N-terminal one-third of yellow fever virus NS3 is capable of cis-acting site-specific proteolysis at the NS2B-NS3 cleavage site and dilution-insensitive cleavage of the NS2A-NS2B site. Site-directed mutagenesis of the His-53, Asp-77, and Ser-138 residues of NS3 that compose the proposed catalytic triad implicates this domain as a serine protease. Infectious virus was not recovered from mammalian cells transfected with RNAs transcribed from full-length yellow fever virus cDNA templates containing mutations at Ser-138 (which abolish or dramatically reduce protease activity in vitro), suggesting that the protease is required for viral replication.


Subject(s)
Capsid/metabolism , Serine Endopeptidases/genetics , Viral Core Proteins/metabolism , Yellow fever virus/enzymology , Capsid/genetics , Cloning, Molecular , DNA Mutational Analysis , Genes, Viral , Protein Biosynthesis , Protein Precursors/metabolism , Viral Core Proteins/genetics , Viral Nonstructural Proteins , Viral Proteins/metabolism , Viral Structural Proteins/genetics , Yellow fever virus/genetics
19.
J Biol Chem ; 265(33): 20409-13, 1990 Nov 25.
Article in English | MEDLINE | ID: mdl-2173706

ABSTRACT

Type IV collagenase (gelatinase) readily cleaves denatured collagen into very small peptides. Large cyanogen bromide fragments (25 kDa) of type I collagen are degraded at the same rate as the complete alpha-chain. A number of the gelatinolytic cleavage sites of alpha 1(I)CB7 and alpha 1(I)CB8, representing 50% of the collagen alpha-chain, were determined by sequence analysis of product peptides. In addition to the expected cleavage between glycine and hydrophobic residues, several other cleavage sites were identified. These sites were Gly-Glu, Gly-Asn, and Gly-Ser. Basic residues were found adjacent to the cleavage site in several cases. Hexapeptides containing these unexpected cleavage sites were synthesized, and Km and kcat values were determined. All but one of the Km values were in the submillimolar range, and turnover numbers for the peptides uncharged at the carboxyl terminus were on the order of 10,000/h. Of particular significance was the finding that hydroxyproline occurs 5 residues from the cleavage site in all carboxyl-terminal product peptides and also occurs 5 residues from the cleavage site in seven of nine amino-terminal product peptides. A requirement for hydroxyproline may be of importance in determining the specificity of this enzyme for denatured collagenous substrates.


Subject(s)
Gelatin , Microbial Collagenase/metabolism , Pepsin A/metabolism , Skin/enzymology , Amino Acid Sequence , Gelatinases , Humans , Kinetics , Molecular Sequence Data , Oligopeptides/chemical synthesis , Substrate Specificity
20.
J Biol Chem ; 265(29): 17868-75, 1990 Oct 15.
Article in English | MEDLINE | ID: mdl-2145277

ABSTRACT

Phosphorylation of the human interferon-gamma (IFN gamma) receptor was studied in three cell lines of distinct lineages using radiophosphate labeling techniques. Receptors from unstimulated Colo-205 displayed a low level of constitutive phosphorylation which was enhanced 5.3-fold following exposure of the cells to either purified recombinant human IFN gamma or phorbol myristate acetate. Enhanced receptor phosphorylation was specific, dose- and time-dependent, reversible, and affected only serine and threonine residues. Increased phosphorylation was observed only when cells were treated with human IFN gamma or phorbol myristate acetate and not with murine IFN gamma, human IFN alpha, human tumor necrosis factor-alpha, or epidermal growth factor. The biologic relevance of IFN gamma receptor phosphorylation was suggested by three additional observations; 1) there was a close correlation between the extent of receptor phosphorylation and the magnitude of the cellular response induced, 2) TNF alpha concomitantly enhanced both IFN gamma-dependent HLA-DR expression and IFN gamma-dependent receptor phosphorylation on Colo-205, and 3) phosphorylation of functionally inactive recombinant murine IFN gamma receptors expressed on transfected human 293 or Colo-205 cells was not induced by murine IFN gamma but was induced by the homologous human ligand. These results suggest that phosphorylation of the IFN gamma receptor is an important step in the development of IFN gamma-dependent cellular responses and indicates that phosphorylation requires a functionally active receptor.


Subject(s)
Interferon-gamma/metabolism , Receptors, Immunologic/metabolism , Animals , Cell Line , HLA-DR Antigens/genetics , Humans , Kinetics , Ligands , Mice , Phosphorylation , Receptors, Immunologic/biosynthesis , Receptors, Immunologic/genetics , Receptors, Interferon , Tetradecanoylphorbol Acetate/pharmacology , Transfection
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