Multi-channel magnetic resonance spectroscopy graphical user interface (McMRSGUI).

This work introduces an open-sourced graphical user interface (GUI) software enabling the combination of multi-channel magnetic resonance spectroscopy data with different literature-based methods for the improvement of the quality and reliability of combined spectra. The multi-channel magnetic resonance spectroscopy graphical user interface (McMRSGUI) is a MATLAB-based spectroscopy processing GUI equipped to load multi-channel MRS data, pre-process, combine, and export combined data for evaluation with open-source quantification software (jMRUI). A literature-based, decision-tree process was incorporated into the combination type selection to serve as a guide to minimize spectral distortion in selecting between weighting methods. Multi-channel, simulated spectra were combined with the different combination techniques and evaluated for spectral distortion to validate the code. The incorporation of the combination methods into a single processing software enables multi-channel magnetic resonance spectroscopy (MRS) data to be combined and compared for improved spectral quality with little user knowledge of combination techniques. Through the spectral peak distortion simulation of the combination methods, combined signal-to-noise ratio (SNR) values from the literature were verified. The spectral peak distortion simulation provides a secondary tool for researchers to estimate the spectral SNR levels when spectral distortion could occur and use this knowledge to further guide the selection of their combination technique. The McMRSGUI provides a software toolkit for evaluating multi-channel MRS data and their combination. Simulations evaluating spectral distortion at different noise levels were performed for each combination method to validate the GUI and demonstrate a method for researchers to assess the combined SNR levels at which they could be introducing spectral distortion.

Evaluation of Low-Loss Polymer Switches for Multinuclear MRI/S.

Implementation of multinuclear MRI/S as a diagnostic tool in clinical settings faces many challenges. One of those challenges is the development of highly sensitive multinuclear RF coils. Current multi-tuning techniques incorporate lossy components that impact the highest achievable SNR for at least one of the coil frequencies. As a result, optimization of multinuclear coil designs continues to be a priority for RF hardware engineers. To address this challenge, a new frequency switching technology that incorporates stimuli-responsive polymer materials was explored. Q measurements were used as a comparison metric between single-tuned, a standard switching network, and the proposed switching technology. The Q losses measured in the new switching method remained below 38% when compared to single-tuned coils. These results are consistent with low loss values reported using traditional switching networks. Furthermore, preliminary testing indicates that there is potential for improvement. These results establish the new technology as a promising alternative to traditional switching techniques.Clinical Relevance- A low loss multi-tuning technique for MRI radiofrequency coils has the potential of improving the study and diagnosis of disease.

Technical note: The design and validation of a multi-modality lung phantom.

BACKGROUND: Clinically relevant models that enable certain tasks such as calibration of medical imaging devices or techniques, device validation, training healthcare professionals, and more are vital to research throughout the medical field and are referred to as phantoms. Phantoms range in complexity from a vile of water to complex designs that emulate in vivo properties. PURPOSE: Specific phantoms that model the lungs have focused on replication of tissue properties but lack replication of the anatomy. This limits the use across multiple imaging modalities and for device testing when anatomical considerations as well as tissue properties are needed. This work reports a lung phantom design utilizing materials that accurately mimic the ultrasound and magnetic resonance imaging (MRI) properties of in vivo lungs and includes relevant anatomical equivalence. METHODS: The tissue mimicking materials were selected based on published studies of the materials, through qualitative comparisons of the materials with ultrasound imaging, and quantitative MRI relaxation values. A PVC ribcage was used as the structural support. The muscle/fat combined layer and the skin layer were constructed with various types of silicone with graphite powder added as a scattering agent where appropriate. Lung tissue was mimicked with silicone foam. The pleural layer was replicated by the interface between the muscle/fat layer and the lung tissue layer, requiring no additional material. RESULTS: The design was validated by accurately mimicking the distinct tissue layers expected with in vivo lung ultrasound while maintaining tissue-mimicking relaxation values in MRI as compared to reported values. Comparisons between the muscle/fat material and in vivo muscle/fat tissue demonstrated a 1.9% difference in T1 relaxation and a 19.8% difference in T2 relaxation. CONCLUSIONS: Qualitative US and quantitative MRI analysis verified the proposed lung phantom design for accurate modeling of the human lungs.

Assessing the Feasibility of Dynamic 31P Spectroscopy for Metabolic Studies With a 1.0T Extremity Scanner.

OBJECTIVE: The feasibility of conducting in vivo non-localized 31P Magnetic Resonance Spectroscopy (MRS) with a 1.0T extremity scanner and the potential to increase accessibility of this important diagnostic tool for low cost applications is revisited. METHODS: This work presents a custom transmit-only quadrature birdcage, four-element receive coil array, and spectrometer interfaced to a commercial ONI 1.0T magnet for enabling multi-channel, non-1H frequency capabilities. A custom, magnetic resonance compatible plantar flexion-extension exercise device was also developed to enable exercise protocols. The coils were assessed with bench measurements and 31P phantom studies before an in vivo demonstration. RESULTS: In pulse and acquire spectroscopy of a phantom, the array was found to improve the signal-to-noise ratio (SNR) by a factor of 1.31 and reduce the linewidth by 13.9% when compared to a large loop coil of the same overall size. In vivo testing results show that two averages and a four second repetition time for a temporal resolution of eight seconds was sufficient to obtain phosphocreatine recovery values and baseline pH levels aligned with expected literature values. CONCLUSION: Initial in vivo human skeletal muscle 31P MRS allowed successful monitoring of metabolic changes during an 18-minute exercise protocol. SIGNIFICANCE: Adding an array coil and multinuclear capability to a commercial low-cost 1.0T extremity scanner enabled the observation of characteristic 31P metabolic information, such as the phosphocreatinerecovery rate and underlying baseline pH.

A Frequency Translation System for Multi-Channel, Multi-Nuclear MR Spectroscopy.

OBJECTIVE: Most MRI scanners are equipped to receive signals from 1H array coils but few support multi-channel reception for other nuclei. Using receive arrays can provide significant SNR benefits, usually exploited to enable accelerated imaging, but the extension of these arrays to non-1H nuclei has received less attention because of the relative lack of broadband array receivers. Non-1H nuclei often have low sensitivity and stand to benefit greatly from the increase in SNR that arrays can provide. This paper presents a cost-effective approach for adapting standard 1H multi-channel array receivers for use with other nuclei - in this case, 13C. METHODS: A frequency translation system has been developed that uses active mixers residing at the magnet bore to convert the received signal from a non-1H array to the 1H frequency for reception by the host system receiver. RESULTS: This system has been demonstrated at 4.7T and 7T while preserving SNR and isolation. 1H decoupling, particularly important for 13C detection, can be straightforwardly accommodated. CONCLUSION: Frequency translation can convert 1H-only multi-channel receivers for use with other nuclei while maintaining SNR and channel isolation while still enabling 1H decoupling. SIGNIFICANCE: This work allows existing multi-channel MRI receivers to be adapted to receive signals from nuclei other than 1H, allowing for the use of receive arrays for in vivo multi-nuclear NMR.

Investigation of Low-Cost Op-Amps as Decoupling Preamplifiers for MRI Array Coils.

The benefits of array coils in MRI and MRS are well known. A key component of essentially all array coils used today is the decoupling preamplifier. Unlike conventional 50 ohm low-noise preamps, decoupling preamps present a reactive impedance to the coil, which can be used to 'block' currents from being induced in the receive coil, reducing the impact of any electromagnetic coupling between array elements. While available from a number of vendors, a lower-cost solution would be advantageous. We investigate the use of conventional operational amplifiers as low-noise decoupling preamplifiers. In this paper the performance of the op-amp preamplifier is compared to conventional 50 Ω. The op-amp preamp design shows promise for use as a decoupling preamplifier with array coils.Clinical Relevance- This work could facilitate the development of array coils for spectroscopy and imaging.

Chemical Modifications of Porous Shape Memory Polymers for Enhanced X-ray and MRI Visibility.

The goal of this work was to develop a shape memory polymer (SMP) foam with visibility under both X-ray and magnetic resonance imaging (MRI) modalities. A porous polymeric material with these properties is desirable in medical device development for applications requiring thermoresponsive tissue scaffolds with clinical imaging capabilities. Dual modality visibility was achieved by chemically incorporating monomers with X-ray visible iodine-motifs and MRI visible monomers with gadolinium content. Physical and thermomechanical characterization showed the effect of increased gadopentetic acid (GPA) on shape memory behavior. Multiple compositions showed brightening effects in pilot, T1-weighted MR imaging. There was a correlation between the polymeric density and X-ray visibility on expanded and compressed SMP foams. Additionally, extractions and indirect cytocompatibility studies were performed to address toxicity concerns of gadolinium-based contrast agents (GBCAs). This material platform has the potential to be used in a variety of medical devices.

Multi-Tuned Cable Traps for Multinuclear MRI and MRS.

OBJECTIVE: The method of pole-insertion for multi-tuning cable traps was studied for multinuclear MRI and MRS applications. METHODS: Relative efficiency of the different cable trap modes was studied as component values were varied and at four different magnetic field strengths. In all cases, efficiencies were compared to equivalent single-tuned designs. RESULTS: The multi-tuned traps were able to block shield currents at multiple frequencies with only slightly degraded efficiencies as compared to their single-tuned counterparts. As in double-tuned coil design, the cable trap effectiveness at each frequency was found to be highly dependent on the trap inductor value with larger trap inductances leading to worse efficiency at the lower frequency but better efficiency at the higher frequency. This relationship held at all field strengths examined. CONCLUSION: This work presents design guidelines for the double-tuning method that are useful when designing RF coils for multinuclear studies. The design takes up less space than using two single-tuned cable traps mounted in series as is commonly done. Triple-tuned and "floating" designs were also demonstrated as proofs-of-concept for a single field strength and showed great promise to prove similarly useful in future studies. SIGNIFICANCE: For many applications such as when using high-density array coils, finding a space-efficient solution to eliminate common-mode currents could be of significant benefit. This multi-tuned approach provides space efficiency at a small cost in trapping efficiency.

Feasibility of Using a 1T Extremity Scanner with a Four-Element Array to Detect 31P in the Human Calf.

The feasibility of conducting in vivo non-localized skeletal muscle 31P Magnetic Resonance Spectroscopy (MRS) with a low-cost extremity 1 Tesla magnet is demonstrated. We designed and built a transmit-only quadrature birdcage, four-element receive coil array, and employed a home-built spectrometer interfaced with a commercial ONI 1.0T magnet. In phantom comparison tests with a large loop coil of comparable size, the array was found to improve the SNR by a factor of 1.8 and the linewidth from 0.72 ppm to 0.45 ppm. Phantom and in vivo testing results show only 6 averages with a 4 second repetition time are required to obtain quantifiable 31P spectra. Initial in vivo human skeletal muscle 31P spectra successfully allowed for peak characterization. A low-cost approach to MRS could enable more widespread use of this tool in clinical diagnosis and in vivo metabolic research.

Automated modification and fusion of voxel models to construct body phantoms with heterogeneous breast tissue: Application to MRI simulations.

BACKGROUND: Human voxel models incorporating detailed anatomical features are vital tools for the computational evaluation of electromagnetic (EM) fields within the body. Besides whole-body human voxel models, phantoms representing smaller heterogeneous anatomical features are often employed; for example, localized breast voxel models incorporating fatty and fibroglandular tissues have been developed for a variety of EM applications including mammography simulation and dosimetry, magnetic resonance imaging (MRI), and ultra-wideband microwave imaging. However, considering wavelength effects, electromagnetic modeling of the breast at sub-microwave frequencies necessitates detailed breast phantoms in conjunction with whole-body voxel models. METHODS: Heterogeneous breast phantoms are sized to fit within radiofrequency coil hardware, modified by voxel-wise extrusion, and fused to whole-body models using voxel-wise, tissue-dependent logical operators. To illustrate the utility of this method, finite-difference time-domain simulations are performed using a whole-body model integrated with a variety of available breast phantoms spanning the standard four tissue density classifications representing the majority of the population. RESULTS: The software library uses a combination of voxel operations to seamlessly size, modify, and fuse eleven breast phantoms to whole-body voxel models. The software is publicly available on GitHub and is linked to the file exchange at MATLAB® Central. Simulations confirm the proportions of fatty and fibroglandular tissues in breast phantoms have significant yet predictable implications on projected power deposition in tissue. CONCLUSIONS: Breast phantoms may be modified and fused to whole-body voxel models using the software presented in this work; user considerations for the open-source software and resultant phantoms are discussed. Furthermore, results indicate simulating breast models as predominantly fatty tissue can considerably underestimate the potential for tissue heating in women with substantial fibroglandular tissue.

Exploration of highly accelerated magnetic resonance elastography using high-density array coils.

BACKGROUND: Magnetic resonance elastography (MRE) measures tissue mechanical properties by applying a shear wave and capturing its propagation using magnetic resonance imaging (MRI). By using high density array coils, MRE images are acquired using single echo acquisition (SEA) and at high resolutions with significantly reduced scan times. METHODS: Sixty-four channel uniplanar and 32×32 channel biplanar receive arrays are used to acquire MRE wave image sets from agar samples containing regions of varying stiffness. A mechanical actuator triggered by a stepped delay time introduces vibrations into the sample while a motion sensitizing gradient encodes micrometer displacements into the phase. SEA imaging is used to acquire each temporal offset in a single echo, while multiple echoes from the same array are employed for highly accelerated imaging at high resolutions. Additionally, stiffness variations as a function of temperature are studied by using a localized heat source above the sample. A custom insertable gradient coil is employed for phase compensation of SEA imaging with the biplanar array to allow imaging of multiple slices. RESULTS: SEA MRE images show a mechanical shear wave propagating into and across agar samples. A set of 720 images was obtained in 720 echoes, plus a single reference scan for both harmonic and transient MRE. A set of 2,950 wave image frames was acquired from pairs of SEA images captured during heating, showing the change in mechanical wavelength with the change in agar properties. A set of 240 frames was acquired from two slices simultaneously using the biplanar array, with phase images processed into displacement maps. Combining the narrow sensitivity patterns and SNR advantage of the SEA array coil geometry allowed acquisition of a data set with a resolution of 156 µm × 125 µm × 1,000 µm in only 64 echoes, demonstrating high resolution and high acceleration factors. CONCLUSIONS: MRE using high-density arrays offers the unique ability to acquire a single frame of a propagating mechanical vibration with each echo, which may be helpful in non-repeatable or destructive testing. Highly accelerated, high resolution MRE may be enabled by the use of large arrays of coils such as used for SEA, but at lower acceleration rates supporting the higher resolution than provided by SEA imaging.

Effects of coplanar shielding for high field MRI.

This work investigates the efficacy of "coplanar shielding," in which copper shields are oriented concentric and coplanar to the RF coils rather than implemented as a full ground plane behind them. Following FDTD simulations to determine optimal shielding parameters, two coil geometries were constructed: a circular loop surface coil and a half-volume five-element receive array. Each was evaluated using bench measurements with and without coplanar shielding. Imaging, including accelerated SENSE imaging, was performed with the shielded and unshielded receive arrays on a whole-body 7T scanner. Results from modeled and fabricated coils showed good agreement with improvements in Q factors for all cases. Imaging showed substantial improvements in SNR and g-factors for the coplanar shielded array.

A three-element 1H-31P dual-tuned array for magnetic resonance spectroscopy at 4.7 T.

This work describes the construction and testing of a three-element, double-tuned receive array and transmit coils for 31P-1H spectroscopy and imaging. The receive coils were geometrically-decoupled, single-loop surface coils and the transmit coils were concentric saddle coils. The coils were used to examine a physiologically-modeled CNC-milled phantom. The receive coil array was able to improve SNR while also providing gross localization of the 1H and 31P signals.

Trap Design and Construction for High-Power Multinuclear Magnetic Resonance Experiments.

Performing multinuclear experiments requires one or more radiofrequency (RF) coils operating at both the proton and second-nucleus frequencies; however, inductive coupling between coils must be mitigated to retain proton sensitivity and coil tuning stability. The inclusion of trap circuits simplifies placement of multinuclear RF coils while maintaining inter-element isolation. Of the commonly investigated non-proton nuclei, perhaps the most technically demanding is carbon-13, particularly when applying a proton decoupling scheme to improve the resulting spectra. This work presents experimental data for trap circuits withstanding high-power broadband proton decoupling of carbon-13 at 7 T. The advantages and challenges of building trap circuits with various inductor and capacitor components are discussed. Multiple trap designs are evaluated on the bench and utilized on an RF coil at 7 T to detect broadband proton-decoupled carbon-13 spectra from a lipid phantom. A particular trap design, built from a coaxial stub inductor and high-voltage ceramic chip capacitors, is highlighted owing to both its performance and adaptability for planar array coil elements with diverse spatial orientations.

A microfluidically cryocooled spiral microcoil with inductive coupling for MR microscopy.

Magnetic resonance (MR) microscopy typically employs microcoils for enhanced local signal-to-noise ratio (SNR). Planar (surface) microcoils, in particular, offer the potential to be configured into array elements as well as to enable the imaging of extremely small samples because of the uniformity and precision provided by microfabrication techniques. Microcoils, in general, however, are copper-loss dominant, and cryocooling methods have been successfully used to improve the SNR. Cryocooling of the matching network elements, in addition to the coil itself, has shown to provide the most improvement, but can be challenging with respect to cryostat requirements, cabling, and tuning. Here we present the development of a microfluidically cryocooled spiral microcoil with integrated microfabricated parallel plate capacitors, allowing for localized cryocooling of both the microcoil and the on-chip resonating capacitor to increase the SNR while keeping the sample-to-coil distance within the most sensitive imaging range of the microcoil. Inductive coupling was used instead of a direct transmission line connection to eliminate the physical connection between the microcoil and the tuning network so that a single cryocooling microfluidic channel could enclose both the microcoil and the on-chip capacitor with minimum loss in cooling capacity. Comparisons between the cooled and uncooled cases were made via Q-factor measurements and agreed well with the theoretically achievable improvement: the cooled integrated capacitor coil with inductive coupling achieved a factor of 2.6 improvement in Q-factor over a reference coil conventionally matched and tuned with high- Q varactors and capacitively connected to the transmission line.

Geometric decoupling of a mouse array coil using a dual plane pair design with crisscrossed return paths and custom mounting fixture.

An element design for receive array coils that decouples from the transmit coil without external active detuning is presented for magnetic resonance imaging (MRI) of mice. The array element uses a crisscrossed geometry on the return paths to reduce the current induced by the transmit coil. Without the need for an external active detune network, the proposed method simplifies the construction of MRI coil systems and also mitigates problems in space-limited MRI applications. In addition, an adaptable scissor-jack-like fixture is presented that allows the receive array to move parallel to the transmit coil to maintain the decoupling condition while maintaining close contact with varying sizes of mice.

A magnetic resonance (MR) microscopy system using a microfluidically cryo-cooled planar coil.

We present the development of a microfluidically cryo-cooled planar coil for magnetic resonance (MR) microscopy. Cryogenically cooling radiofrequency (RF) coils for magnetic resonance imaging (MRI) can improve the signal to noise ratio (SNR) of the experiment. Conventional cryostats typically use a vacuum gap to keep samples to be imaged, especially biological samples, at or near room temperature during cryo-cooling. This limits how close a cryo-cooled coil can be placed to the sample. At the same time, a small coil-to-sample distance significantly improves the MR imaging capability due to the limited imaging depth of planar MR microcoils. These two conflicting requirements pose challenges to the use of cryo-cooling in MR microcoils. The use of a microfluidic based cryostat for localized cryo-cooling of MR microcoils is a step towards eliminating these constraints. The system presented here consists of planar receive-only coils with integrated cryo-cooling microfluidic channels underneath, and an imaging surface on top of the planar coils separated by a thin nitrogen gas gap. Polymer microfluidic channel structures fabricated through soft lithography processes were used to flow liquid nitrogen under the coils in order to cryo-cool the planar coils to liquid nitrogen temperature (-196 °C). Two unique features of the cryo-cooling system minimize the distance between the coil and the sample: (1) the small dimension of the polymer microfluidic channel enables localized cooling of the planar coils, while minimizing thermal effects on the nearby imaging surface. (2) The imaging surface is separated from the cryo-cooled planar coil by a thin gap through which nitrogen gas flows to thermally insulate the imaging surface, keeping it above 0 °C and preventing potential damage to biological samples. The localized cooling effect was validated by simulations, bench testing, and MR imaging experiments. Using this cryo-cooled planar coil system inside a 4.7 Tesla MR system resulted in an average image SNR enhancement of 1.47 ± 0.11 times relative to similar room-temperature coils.

A fourth gradient to overcome slice dependent phase effects of voxel-sized coils in planar arrays.

The signals from an array of densely spaced long and narrow receive coils for MRI are complicated when the voxel size is of comparable dimension to the coil size. The RF coil causes a phase gradient across each voxel, which is dependent on the distance from the coil, resulting in a slice dependent shift of k-space. A fourth gradient coil has been implemented and used with the system's gradient set to create a gradient field which varies with slice. The gradients are pulsed together to impart a slice dependent phase gradient to compensate for the slice dependent phase due to the RF coils. However the non-linearity in the fourth gradient which creates the desired slice dependency also results in a through-slice phase ramp, which disturbs normal slice refocusing and leads to additional signal cancelation and reduced field of view. This paper discusses the benefits and limitations of using a fourth gradient coil to compensate for the phase due to RF coils.

A flow quantification method using fluid dynamics regularization and MR tagging.

This paper presents a new method for improved flow analysis and quantification using MRI. The method incorporates fluid dynamics to regularize the flow quantification from tagged MR images. Specifically, the flow quantification is formulated as a minimization problem based on the following: 1) the Navier-Stokes equation governing the fluid dynamics; 2) the flow continuity equation and boundary conditions; and 3) the data consistency constraint. The minimization is carried out using a genetic algorithm. This method is tested using both computer simulations and MR flow experiments. The results are evaluated using flow vector fields from the computational fluid dynamics software package as a reference, which show that the new method can achieve more realistic and accurate flow quantifications than the conventional method.

Reducing SAR in parallel excitation using variable-density spirals: a simulation-based study.

Parallel excitation using multiple transmit channels has emerged as an effective method to shorten multidimensional spatially selective radiofrequency (RF) pulses, which have a number of important applications, including B1 field inhomogeneity correction in high-field MRI. The specific absorption rate (SAR) is a primary concern in high-field MRI, where wavelength effects can lead to local peaks in SAR. In parallel excitation, the subjects are exposed to RF pulses from multiple coils, which makes the SAR problem more complex to analyze, yet potentially enables greater freedom in designing RF pulses with lower SAR. Parallel-excitation techniques typically employ either Cartesian or constant-density (CD) spiral trajectories. In this article, variable-density (VD) spiral trajectories are explored as a means for SAR reduction in parallel-excitation pulse design. Numerical simulations were conducted to study the effects of CD and VD spirals on parallel excitation. Specifically, the electromagnetic fields of a four-channel transmit head coil with a three-dimensional head model at 4.7 T were simulated using a finite-difference time domain method. The parallel RF pulses were designed and the resulting excitation patterns were generated using a Bloch simulator. The SAR distributions due to CD and VD spirals were evaluated quantitatively. The simulation results show that, for the same pulse duration, parallel excitation with VD spirals can achieve a lower SAR compared to CD spirals for parallel excitation. VD spirals also resulted in reduced artifact power in the excitation patterns. This gain came with slight, but noticeable, degrading of the spatial resolution of the resulting excitation patterns.