A critical role for the C-terminus of Nej1 protein in Lif1p association, DNA binding and non-homologous end-joining.

A predominant pathway implicated in repair of DNA double-strand breaks (DSBs) is the evolutionarily conserved non-homologous end-joining (NHEJ) pathway. Among the major constituents of this pathway in Saccharomyces cerevisiae is Nej1p, for which a biochemical function has yet to be determined. In this work we demonstrate that Nej1p exhibits a DNA binding activity (KD approximately 1.8 microM) comparable to Lif1p. Although binding is enhanced with larger substrates (>300 bp), short approximately 20 bp substrates can suffice. This DNA binding activity is the first biochemical evidence supporting the idea that Nej1p plays a direct role in the repair of double-strand breaks. The C-terminus of Nej1p is required for interaction with Lif1p and is sufficient for DNA binding. Structural characterization reveals that Nej1p exists as a dimer, and that residues 1-244 are sufficient for dimer formation. Nej1p (aa 1-244) is shown to be defective in end-joining in vivo. Preliminary functional and structural studies on the Nej1p-Lif1p complex suggest that the proteins stably co-purify and the complex binds DNA with a higher affinity than each independent component. The significance of these results is discussed with reference to current literature on Nej1p and other end-joining factors (mammalian and yeast), specifically the recently identified putative mammalian homologue of Nej1p, XLF/Cernunnos.

Purification and biophysical characterization of a minimal functional domain and of an N-terminal Zn2+-binding fragment from the human papillomavirus type 16 E6 protein.

The E6 Zn(2+)-binding protein of high-risk human papillomaviruses (HPVs) is one of the major transforming proteins encoded by these tumor viruses. A bacterial system was used to express wild type and truncated forms of HPV-16 E6 linked to GST. The recombinant proteins were released from GST through cleavage of a factor Xa site. Functional analysis of these proteins demonstrated that amino acids 2--142 comprise the minimal domain of E6 required to promote the degradation of p53 in vitro in a rabbit reticulocyte lysate. This purified protein, E6(Delta 143--151), required a high salt concentration for maximum solubility, eluted as a monomer on gel filtration, and was shown to bind two Zn(2+) ions by atomic absorption analysis. An N-terminal subdomain of E6 (amino acids 2--77, E6-N) was similarly purified. Unlike E6(Delta 143--151), E6--N was very soluble in low-salt buffers and hence was highly amenable to biophysical characterization. E6-N was shown to bind one Zn(2+) ion by electrospray mass spectrometry and by atomic absorption analysis. UV--visible spectroscopic analysis of Co(2+)-substituted E6--N revealed that four cysteine residues coordinate the metal ion. Mutational studies of all the cysteine residues in E6--N substantiated a critical role for Cys 30, 33, 63, and 66 in Zn(2+) binding and in proper folding of the subdomain. Equilibrium sedimentation of E6-N demonstrated that it is a monomer, like E6(Delta 143--151), at low concentrations, but dimerization occurs at high concentrations (K(d) = 0.1 mM). Finally, circular dichroism studies revealed significant secondary structure for both E6(Delta 143--151) and E6--N. The results support a model of monomeric E6 possessing two functionally critical Zn(2+)-binding motifs.

How to make a questionnaire work.

This article is the final one in a series on compiling a questionnaire, and it examines layout, issues of reliability and validity and piloting.

How to avoid the pitfalls of questionnaire design.

This article discusses how questionnaires are constructed and used. Question choice and construction plus the allocation of codes to analyse answers are discussed. A second article on this subject, due to appear in Nursing Times on June 4, will examine questionnaire layout, issues of reliability and validity and questionnaire piloting.

The ward sister/charge nurse as 'on site' manager.

The traditional role of ward sister/charge nurse has been redefined as ward manager with the devolving of many new responsibilities, including acting as 'on site' manager out of hours. Using a self-report questionnaire, the study explored the experiences of all ward managers performing hospital cover within one hospital (n = 18). Common problems encountered included arranging cover for staff absence at short notice and bed management. The sample group viewed the addition of hospital cover as an appropriate development in the role of ward manager. However, few gained any job satisfaction from the role, citing growing time commitment, increasing absence from clinical areas and feelings of stress as possible causes. In addition, the study highlighted the lack of preparation ward managers had received before involvement with hospital cover.

The thiazole ylide: a frequently invoked intermediate is a stable species in the gas phase.

The 1, 2-hydrogen shift isomers of neutral (singlet and triplet) thiazole (1) and its radical cation have been investigated by a combination of mass spectro-metric experiments and hybrid density functional theory calculations. The latter were used to probe the structures and stabilities of selected C3 H3 NS and C3 H3 NS(.+) isomers and transition state structures. Although 3H-thiazole-2-ylidene (2) is less stable than 1, by 31.5 kcalmol(-1) , it is expected to be capable of independent existence, since the 1, 2-hydrogen shift from carbon to nitrogen involves a very large energy barrier of 72.4 kcalmol(-1) . The other 1, 2-hydrogen shift reaction from C(2) leads not to the expected cyclic 1H-thiazole-2-ylidene structure (3), which is apparently unstable, but rather to the ring-opened species HSCHCHNC (4), which is 34.5 kcalmol(-1) higher in energy than 1. The barrier in this case is lower but still large (54.9 kcalmol(-1) ). The triplet ground states of 1, 2 and 4 are considerably destabilised (69.5, 63.2 and 58.7 kcalmol(-1) ) relative to their singlet states. Interestingly, in addition to 2(.+) and 4(.+) , the cyclic radical cation 3(.+) is predicted to be stable although it is substantially higher in energy than ionised thiazole 1(.+) (by 53.9 kcalmol(-1) ), whereas 2(.+) and 4(.+) are much closer in energy (only 10.2 and 27.0 kcalmol(-1) higher, respectively). Dissuading 2(.+) and 3(.+) from isomerising to 1(.+) are energy barriers of 52.6 and 15.3 kcalmol(-1) , respectively. Experimentally, dissociative ionisation of 2-acetylthiazole enabled the generation of 2(.+) , which could be differentiated from 1(.+) by collisional activation mass spectrometry. Reduction of the ylide ion 2(.+) in neutralisation-reionisation mass spectrometry experiments yielded the corresponding neutral molecule 2. This direct observation of a thiazolium ylide provides support for postulates of such species as discrete intermediates in a variety of biochemical transformations.

Clinical supervision for expanded practice in ENT.

Changes in health-care delivery have led to opportunities for expanded practice for nurses. Expanded practice can involve sharing responsibilities with medical staff. Clinical supervision is an important element in the development of professional skills.

Ion permeability through bilayer lipid membranes for biosensor development: control by chemical modification of interfacial regions between phase domains.

Based on the results of studies on cystic fibrosis, which implicated hydroxystearic acid (HSA) as a contributing factor in altered biomembrane function, solvent-free bilayer lipid membranes (BLMs) and monolayer films were prepared from a lipid mixture containing (by mass) 34% phosphatidylcholine, 19% dipalmitoylphosphatidyl serine, 47% cholesterol and variable amounts of 10- and 12-HSA (0-50%). Ion currents, resulting from K+ permeation through BLMs that were supported in 0.1 mol dm-3 KCl solutions buffered to pH 7.4, were monitored with use of a d.c. circuit. The structures of monolayer films at the air-water interface of a Langmuir-Blodgett trough were studied by pressure-area correlations and by further correlation with microscopic phase separation as revealed by fluorescence microscopy. In order to elucidate the role of the hydroxyl moieties in ion permeability, the transmembrane ion current was corrected for the effect of the negative surface charge of the carboxylic acid by replacement of the HSA component with stearic acid. The ion current was found to increase with the molar proportion of the HSAs. Two models for ion conduction through BLMs were considered: 'hopping' via hydrophilic sites within the hydrophobic zone of the BLMs, introduced by the hydroxyl moiety of 10- or 12-HSA; and transport through interfacial regions between phase domains that represent areas of low steric density and low structural order within monolayers. Although the two mechanisms are not distinct, the ion permeability results indicate a change in the response of ion current to HSA concentration at 35 mol-%, suggesting a change in the relative proportion of the mechanisms.(ABSTRACT TRUNCATED AT 250 WORDS)

Fluorescence wavelength, intensity and lifetime for multidimensional transduction of selective interactions of acetylcholine receptor by lipid membranes.

Concurrent analysis of the fluorescence intensity, at different emission wavelengths, of lipid vesicles containing acetylcholine receptor (AChR) labelled with a nitrobenzoxadiazole (NBD) moiety shows that selective interactions with the agonist carbamylcholine can be detected reproducibly by a self-calibration method with muM detection limits. Concurrent analysis of the fluorescence intensity and lifetime of the new probe 4-dicyanomethylene-1,2,3,4-tetrahydromethylquinoline (DCQ) shows that general alterations of lipid membrane structure induced by temperature variation in the head-group region of lipid vesicles can be determined. A general approach to detection of selective interactions is introduced by observation of fluorescence intensity and lifetime changes of the probe NBD-phosphatidyl ethanolamine dispersed in lipid membranes containing unlabelled AChR. Detection and differentiation of selective interactions between carbamylcholine and the antagonist alpha-bungarotoxin are possible by correlation with intensity and lifetime at different emission wavelengths.