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1.
Mol Biol Cell ; 22(18): 3498-507, 2011 Sep.
Article in English | MEDLINE | ID: mdl-21795401

ABSTRACT

To account for the many functions of phosphatidylinositol 4,5-bisphosphate (PIP(2)), several investigators have proposed that there are separate pools of PIP(2) in the plasma membrane. Recent experiments show the surface concentration of PIP(2) is indeed enhanced in regions where phagocytosis, exocytosis, and cell division occurs. Kinases that produce PIP(2) are also concentrated in these regions. However, how is the PIP(2) produced by these kinases prevented from diffusing rapidly away? First, proteins could act as "fences" around the perimeter of these regions. Second, some factor could markedly decrease the diffusion coefficient, D, of PIP(2) within these regions. We used fluorescence correlation spectroscopy (FCS) and fluorescence recovery after photobleaching (FRAP) to investigate these two possibilities in the forming phagosomes of macrophages injected with fluorescent PIP(2). FCS measurements show that PIP(2) diffuses rapidly (D ~ 1 µm(2)/s) in both the forming phagosomes and unengaged plasma membrane. FRAP measurements show that the fluorescence from PIP(2) does not recover (>100 s) after photobleaching the entire forming phagosome but recovers rapidly (~10 s) in a comparable area of membrane outside the cup. These results (and similar data for a plasma membrane-anchored green fluorescent protein) support the hypothesis that a fence impedes the diffusion of PIP(2) into and out of forming phagosomes.


Subject(s)
Diffusion , Macrophages/metabolism , Phagosomes/metabolism , Phosphatidylinositol 4,5-Diphosphate/metabolism , Actin Cytoskeleton , Animals , Antibodies, Immobilized/metabolism , Cell Line , Cell Membrane/metabolism , Fluorescence Recovery After Photobleaching , Mice , Microinjections , Microscopy, Fluorescence , Microspheres , Phagocytosis , Time-Lapse Imaging
2.
Mol Biol Cell ; 20(23): 4910-9, 2009 Dec.
Article in English | MEDLINE | ID: mdl-19812247

ABSTRACT

The juxtamembrane domain of vesicle-associated membrane protein (VAMP) 2 (also known as synaptobrevin2) contains a conserved cluster of basic/hydrophobic residues that may play an important role in membrane fusion. Our measurements on peptides corresponding to this domain determine the electrostatic and hydrophobic energies by which this domain of VAMP2 could bind to the adjacent lipid bilayer in an insulin granule or other transport vesicle. Mutation of residues within the juxtamembrane domain that reduce the VAMP2 net positive charge, and thus its interaction with membranes, inhibits secretion of insulin granules in beta cells. Increasing salt concentration in permeabilized cells, which reduces electrostatic interactions, also results in an inhibition of insulin secretion. Similarly, amphipathic weak bases (e.g., sphingosine) that reverse the negative electrostatic surface potential of a bilayer reverse membrane binding of the positively charged juxtamembrane domain of a reconstituted VAMP2 protein and inhibit membrane fusion. We propose a model in which the positively charged VAMP and syntaxin juxtamembrane regions facilitate fusion by bridging the negatively charged vesicle and plasma membrane leaflets.


Subject(s)
Cell Membrane/metabolism , Membrane Fusion/physiology , Phospholipids , Transport Vesicles/metabolism , Vesicle-Associated Membrane Protein 2/metabolism , 3T3-L1 Cells , Amino Acid Sequence , Animals , Glucose Transporter Type 4/metabolism , Humans , Insulin/metabolism , Mice , Molecular Sequence Data , Mutation , Phospholipids/chemistry , Phospholipids/metabolism , Protein Binding , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , SNARE Proteins/metabolism , Sequence Alignment , Static Electricity , Vesicle-Associated Membrane Protein 2/genetics
3.
Biophys J ; 96(12): 4887-95, 2009 Jun 17.
Article in English | MEDLINE | ID: mdl-19527647

ABSTRACT

Calcium/calmodulin (Ca/CaM) binds to the intracellular juxtamembrane domain (JMD) of the epidermal growth factor receptor (EGFR). The basic JMD also binds to acidic lipids in the inner leaflet of the plasma membrane, and this interaction may contribute an extra level of autoinhibition to the receptor. Binding of a ligand to the EGFR produces a rapid increase in intracellular calcium, [Ca2+]i, and thus Ca/CaM. How does Ca/CaM compete with the plasma membrane for the JMD? Does Ca/CaM directly pull the JMD off the membrane or does Ca/CaM only bind to the JMD after it has dissociated spontaneously from the bilayer? To answer this question, we studied the effect of Ca/CaM on the rate of dissociation of fluorescent JMD peptides from phospholipid vesicles by making kinetic stop-flow measurements. Ca/CaM increases the rate of dissociation: an analysis of the differential equations that describe the dissociation shows that Ca/CaM must directly pull the basic JMD peptide off the membrane surface. These measurements lead to a detailed atomic-level mechanism for EGFR activation that reconciles the existence of preformed EGFR dimers/oligomers with the Kuriyan allosteric model for activation of the EGFR kinase domains.


Subject(s)
Calmodulin/metabolism , Cell Membrane/metabolism , ErbB Receptors/metabolism , Animals , Calmodulin/chemistry , Cattle , Cell Membrane/chemistry , Diffusion , ErbB Receptors/chemistry , Kinetics , Peptide Fragments/chemistry , Peptide Fragments/metabolism , Phosphatidylcholines/metabolism , Phosphatidylserines/metabolism , Protein Binding
4.
Mol Biol Cell ; 19(4): 1663-9, 2008 Apr.
Article in English | MEDLINE | ID: mdl-18256277

ABSTRACT

Phosphatidylinositol 4,5-bisphosphate (PIP(2)) controls a surprisingly large number of processes in cells. Thus, many investigators have suggested that there might be different pools of PIP(2) on the inner leaflet of the plasma membrane. If a significant fraction of PIP(2) is bound electrostatically to unstructured clusters of basic residues on membrane proteins, the PIP(2) diffusion constant, D, should be reduced. We microinjected micelles of Bodipy TMR-PIP(2) into cells, and we measured D on the inner leaflet of fibroblasts and epithelial cells by using fluorescence correlation spectroscopy. The average +/- SD value from all cell types was D = 0.8 +/- 0.2 microm(2)/s (n = 218; 25 degrees C). This is threefold lower than the D in blebs formed on Rat1 cells, D = 2.5 +/- 0.8 microm(2)/s (n = 26). It is also significantly lower than the D in the outer leaflet or in giant unilamellar vesicles and the diffusion coefficient for other lipids on the inner leaflet of these cell membranes. The simplest interpretation is that approximately two thirds of the PIP(2) on inner leaflet of these plasma membranes is bound reversibly.


Subject(s)
Cell Membrane/metabolism , Phosphatidylinositol 4,5-Diphosphate/metabolism , Animals , Boron Compounds , Cell Line , Diffusion , Epithelial Cells/metabolism , Fibroblasts/metabolism , Fluorescent Dyes , Humans , Membranes, Artificial , Microscopy, Confocal , Phosphoinositide Phospholipase C/metabolism , Rats , Rhodamines , Spectrometry, Fluorescence
5.
J Biol Chem ; 282(22): 16644-53, 2007 Jun 01.
Article in English | MEDLINE | ID: mdl-17430887

ABSTRACT

Phospholipase C-zeta (PLC-zeta) is a sperm-specific enzyme that initiates the Ca2+ oscillations in mammalian eggs that activate embryo development. It shares considerable sequence homology with PLC-delta1, but lacks the PH domain that anchors PLC-delta1 to phosphatidylinositol 4,5-bisphosphate, PIP2. Thus it is unclear how PLC-zeta interacts with membranes. The linker region between the X and Y catalytic domains of PLC-zeta, however, contains a cluster of basic residues not present in PLC-delta1. Application of electrostatic theory to a homology model of PLC-zeta suggests this basic cluster could interact with acidic lipids. We measured the binding of catalytically competent mouse PLC-zeta to phospholipid vesicles: for 2:1 phosphatidylcholine/phosphatidylserine (PC/PS) vesicles, the molar partition coefficient, K, is too weak to be of physiological significance. Incorporating 1% PIP2 into the 2:1 PC/PS vesicles increases K about 10-fold, to 5x10(3) M-1, a biologically relevant value. Expressed fragments corresponding to the PLC-zeta X-Y linker region also bind with higher affinity to polyvalent than monovalent phosphoinositides on nitrocellulose filters. A peptide corresponding to the basic cluster (charge=+7) within the linker region, PLC-zeta-(374-385), binds to PC/PS vesicles with higher affinity than PLC-zeta, but its binding is less sensitive to incorporating PIP2. The acidic residues flanking this basic cluster in PLC-zeta may account for both these phenomena. FRET experiments suggest the basic cluster could not only anchor the protein to the membrane, but also enhance the local concentration of PIP2 adjacent to the catalytic domain.


Subject(s)
Membranes, Artificial , Models, Molecular , Peptides/chemistry , Phosphatidylinositol 4,5-Diphosphate/chemistry , Type C Phospholipases/chemistry , Animals , Catalytic Domain , Isoenzymes/chemistry , Isoenzymes/metabolism , Mice , Peptides/metabolism , Phosphatidylinositol 4,5-Diphosphate/metabolism , Phosphoinositide Phospholipase C , Phospholipase C delta , Protein Binding , Protein Structure, Tertiary , Rats , Sequence Homology, Amino Acid , Static Electricity , Type C Phospholipases/metabolism
6.
J Biol Chem ; 282(11): 8474-86, 2007 Mar 16.
Article in English | MEDLINE | ID: mdl-17227773

ABSTRACT

Membrane-permeable calmodulin inhibitors, such as the napthalenesulfonamide derivatives W-7/W-13, trifluoperazine, and calmidazolium, are used widely to investigate the role of calcium/calmodulin (Ca2+/CaM) in living cells. If two chemically different inhibitors (e.g. W-7 and trifluoperazine) produce similar effects, investigators often assume the effects are due to CaM inhibition. Zeta potential measurements, however, show that these amphipathic weak bases bind to phospholipid vesicles at the same concentrations as they inhibit Ca2+/CaM; this suggests that they also bind to the inner leaflet of the plasma membrane, reducing its negative electrostatic surface potential. This change will cause electrostatically bound clusters of basic residues on peripheral (e.g. Src and K-Ras4B) and integral (e.g. epidermal growth factor receptor (EGFR)) proteins to translocate from the membrane to the cytoplasm. We measured inhibitor-mediated translocation of a simple basic peptide corresponding to the calmodulin-binding juxtamembrane region of the EGFR on model membranes; W-7/W-13 causes translocation of this peptide from membrane to solution, suggesting that caution must be exercised when interpreting the results obtained with these inhibitors in living cells. We present evidence that they exert dual effects on autophosphorylation of EGFR; W-13 inhibits epidermal growth factor-dependent EGFR autophosphorylation under different experimental conditions, but in the absence of epidermal growth factor, W-13 stimulates autophosphorylation of the receptor in four different cell types. Our interpretation is that the former effect is due to W-13 inhibition of Ca2+/CaM, but the latter results could be due to binding of W-13 to the plasma membrane.


Subject(s)
Calmodulin/antagonists & inhibitors , Cell Membrane/metabolism , Enzyme Inhibitors/pharmacology , ErbB Receptors/metabolism , Sulfonamides/pharmacology , Animals , Dose-Response Relationship, Drug , Humans , Membrane Potentials , Mice , Models, Biological , Models, Chemical , Phospholipids/chemistry , Phosphorylation , Protein Binding , Static Electricity , Surface Properties , Time Factors
8.
Biochemistry ; 45(42): 12704-14, 2006 Oct 24.
Article in English | MEDLINE | ID: mdl-17042488

ABSTRACT

The transmembrane (TM) and juxtamembrane (JM) regions of the epidermal growth factor receptor (EGFR) couple ligand binding in the extracellular domain to activation of the kinase domain. Solid-state NMR and polarized FTIR measurements of peptides corresponding to the TM plus JM regions of EGFR (residues 622-660) reconstituted in model phospholipid membranes are presented to address the role of the short cytoplasmic JM sequence (residues 645-660) in regulating EGFR activity. We show that the TM domain is helical with a transition to non-helical structure at the TM-JM boundary. Fluorescence measurements indicate that the JM region of EGFR(622-660) binds to the membrane surface and that binding can be reversed by the addition of the complex of Ca2+ and calmodulin. Together these data support models suggesting the cytoplasmic JM region of EGFR plays an active role in regulating receptor activity.


Subject(s)
Calcium/metabolism , Calmodulin/metabolism , ErbB Receptors/metabolism , Peptide Fragments/metabolism , Amino Acid Sequence , Binding Sites , Calmodulin/chemistry , Carbon Isotopes , Circular Dichroism , Deuterium , Dimerization , ErbB Receptors/chemistry , Ligands , Magnetic Resonance Spectroscopy , Peptide Fragments/chemical synthesis , Peptide Fragments/chemistry , Protein Structure, Secondary , Spectrophotometry, Infrared
9.
J Biol Chem ; 281(33): 23932-44, 2006 Aug 18.
Article in English | MEDLINE | ID: mdl-16762919

ABSTRACT

The AKAP gravin is a scaffold for protein kinases, phosphatases, and adaptor molecules obligate for resensitization and recycling of beta2-adrenergic receptors. Gravin binds to the receptor through well characterized protein-protein interactions. These interactions are facilitated approximately 1000-fold when gravin is anchored to the cytoplasmic leaflet of the plasma membrane. Although the N-terminal region (approximately 550 residues) is highly negatively charged and probably natively unfolded, it could anchor gravin to the inner leaflet through hydrophobic insertion of its N-terminal myristate and electrostatic binding of three short positively charged domains (PCDs). Loss of the site of N-myristoylation was found to affect neither AKAP macroscopic localization nor AKAP function. Synthetic peptides corresponding to PCD1-3 bound in vitro to unilamellar phospholipid vesicles with high affinity, a binding reversed by calmodulin in the presence of Ca2+. In vivo gravin localization is regulated by intracellular Ca2+, a function mapping to the N terminus of the protein harboring PCD1, PCD2, and PCD3. Mutation of any two PCDs eliminates membrane association of the non-myristoylated gravin, the sensitivity to Ca2+/calmodulin, and the ability of this scaffold to catalyze receptor resensitization and recycling.


Subject(s)
Calcium/chemistry , Cell Cycle Proteins/metabolism , Cell Membrane/metabolism , Cyclic AMP-Dependent Protein Kinases/metabolism , A Kinase Anchor Proteins , Amino Acid Sequence , Biological Transport , Calcium/metabolism , Calmodulin/chemistry , Calmodulin/metabolism , Cell Cycle Proteins/chemistry , Cell Cycle Proteins/physiology , Cell Line, Tumor , Humans , Intracellular Fluid/chemistry , Intracellular Fluid/metabolism , Intracellular Signaling Peptides and Proteins/chemistry , Lipid Bilayers/metabolism , Membrane Proteins/chemistry , Membrane Proteins/metabolism , Molecular Sequence Data , Myristic Acid/metabolism , Myristoylated Alanine-Rich C Kinase Substrate , Protein Binding , Protein Structure, Tertiary , Receptors, Adrenergic, beta-2/metabolism , Static Electricity
10.
Biophys J ; 91(2): 588-99, 2006 Jul 15.
Article in English | MEDLINE | ID: mdl-16648167

ABSTRACT

Several biologically important peripheral (e.g., myristoylated alanine-rich C kinase substrate) and integral (e.g., the epidermal growth factor receptor) membrane proteins contain clusters of basic residues that interact with acidic lipids in the plasma membrane. Previous measurements demonstrate that the polyvalent acidic lipid phosphatidylinositol 4,5-bisphosphate is bound electrostatically (i.e., sequestered) by membrane-adsorbed basic peptides corresponding to these clusters. We report here three experimental observations that suggest monovalent acidic lipids are not sequestered by membrane-bound basic peptides. 1), Binding of basic peptides to vesicles does not decrease when the temperature is lowered below the fluid-to-gel phase transition. 2), The binding energy of Lys-13 to lipid vesicles increases linearly with the fraction of monovalent acidic lipids. 3), Binding of basic peptides to vesicles produces no self-quenching of fluorescent monovalent acidic lipids. One potential explanation for these results is that membrane-bound basic peptides diffuse too rapidly for the monovalent lipids to be sequestered. Indeed, our fluorescence correlation spectroscopy measurements show basic peptides bound to phosphatidylcholine/phosphatidylserine membranes have a diffusion coefficient approximately twofold higher than that of lipids, and those bound to phosphatidylcholine/phosphatidylinositol 4,5-bisphosphate membranes have a diffusion coefficient comparable to that of lipids.


Subject(s)
Membrane Lipids/chemistry , Membranes, Artificial , Peptides/chemistry , Amino Acid Sequence , Amino Acids, Basic/chemistry , Binding Sites , Hydrophobic and Hydrophilic Interactions , Molecular Sequence Data , Phase Transition , Phosphatidylcholines/chemistry , Phosphatidylserines/chemistry
11.
Nature ; 438(7068): 605-11, 2005 Dec 01.
Article in English | MEDLINE | ID: mdl-16319880

ABSTRACT

Phosphatidylinositol 4,5-bisphosphate (PIP2), which comprises only about 1% of the phospholipids in the cytoplasmic leaflet of the plasma membrane, is the source of three second messengers, activates many ion channels and enzymes, is involved in both endocytosis and exocytosis, anchors proteins to the membrane through several structured domains and has other roles. How can a single lipid in a fluid bilayer regulate so many distinct physiological processes? Spatial organization might be the key to this. Recent studies suggest that membrane proteins concentrate PIP2 and, in response to local increases in intracellular calcium concentration, release it to interact with other biologically important molecules.


Subject(s)
Cell Membrane/chemistry , Cell Membrane/metabolism , Membrane Proteins/chemistry , Membrane Proteins/metabolism , Phosphatidylinositols/metabolism , Animals , Calmodulin/metabolism , Intracellular Signaling Peptides and Proteins/metabolism , Myristoylated Alanine-Rich C Kinase Substrate , Static Electricity
12.
J Gen Physiol ; 126(1): 41-53, 2005 Jul.
Article in English | MEDLINE | ID: mdl-15955874

ABSTRACT

We propose a new mechanism to explain autoinhibition of the epidermal growth factor receptor (EGFR/ErbB) family of receptor tyrosine kinases based on a structural model that postulates both their juxtamembrane and protein tyrosine kinase domains bind electrostatically to acidic lipids in the plasma membrane, restricting access of the kinase domain to substrate tyrosines. Ligand-induced dimerization promotes partial trans autophosphorylation of ErbB1, leading to a rapid rise in intracellular [Ca(2+)] that can activate calmodulin. We postulate the Ca(2+)/calmodulin complex binds rapidly to residues 645--660 of the juxtamembrane domain, reversing its net charge from +8 to -8 and repelling it from the negatively charged inner leaflet of the membrane. The repulsion has two consequences: it releases electrostatically sequestered phosphatidylinositol 4,5-bisphosphate (PIP(2)), and it disengages the kinase domain from the membrane, allowing it to become fully active and phosphorylate an adjacent ErbB molecule or other substrate. We tested various aspects of the model by measuring ErbB juxtamembrane peptide binding to phospholipid vesicles using both a centrifugation assay and fluorescence correlation spectroscopy; analyzing the kinetics of interactions between ErbB peptides, membranes, and Ca(2+)/calmodulin using fluorescence stop flow; assessing ErbB1 activation in Cos1 cells; measuring fluorescence resonance energy transfer between ErbB peptides and PIP(2); and making theoretical electrostatic calculations on atomic models of membranes and ErbB juxtamembrane and kinase domains.


Subject(s)
ErbB Receptors/chemistry , ErbB Receptors/metabolism , Lipid Bilayers/chemistry , Models, Biological , Models, Chemical , Molecular Motor Proteins/chemistry , Molecular Motor Proteins/metabolism , Animals , Binding Sites , COS Cells , Cell Membrane/chemistry , Cell Membrane/metabolism , Chlorocebus aethiops , Computer Simulation , Enzyme Activation , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/metabolism , Protein Binding , Protein Conformation , Protein-Tyrosine Kinases/chemistry , Protein-Tyrosine Kinases/metabolism , Static Electricity
13.
Biochem Soc Symp ; (72): 189-98, 2005.
Article in English | MEDLINE | ID: mdl-15649142

ABSTRACT

The inner leaflet of a typical mammalian plasma membrane contains 20-30% univalent PS (phosphatidylserine) and 1% multivalent PtdIns(4,5)P(2). Numerous proteins have clusters of basic (or basic/hydrophobic) residues that bind to these acidic lipids. The intracellular effector CaM (calmodulin) can reverse this binding on a wide variety of proteins, including MARCKS (myristoylated alanine-rich C kinase substrate), GAP43 (growth-associated protein 43, also known as neuromodulin), gravin, GRK5 (G-protein-coupled receptor kinase 5), the NMDA (N-methyl-D-aspartate) receptor and the ErbB family. We used the first principles of physics, incorporating atomic models and the Poisson-Boltzmann equation, to describe how the basic effector domain of MARCKS binds electrostatically to acidic lipids on the plasma membrane. The theoretical calculations show the basic cluster produces a local positive electrostatic potential that should laterally sequester PtdIns(4,5)P(2), even when univalent acidic lipids are present at a physiologically relevant 100-fold excess; four independent experimental measurements confirm this prediction. Ca(2+)/CaM binds with high affinity (K(d) approximately 10nM) to this domain and releases the PtdIns(4,5)P(2). MARCKS, a major PKC (protein kinase C) substrate, is present at concentrations comparable with those of PtdIns(4,5)P(2) (approx. 10 microM) in many cell types. Thus MARCKS can act as a reversible PtdIns(4,5)P(2) buffer, binding PtdIns(4,5)P(2) in a quiescent cell, and releasing it locally when the intracellular Ca(2+) concentration increases. This reversible sequestration is important because PtdIns(4,5)P(2) plays many roles in cell biology. Less is known about the role of CaM-mediated reversible membrane binding of basic/hydrophobic clusters for the other proteins.


Subject(s)
Calmodulin/metabolism , Cell Membrane/metabolism , Membrane Lipids/chemistry , Membrane Lipids/metabolism , Membrane Proteins/chemistry , Membrane Proteins/metabolism , Animals , Humans , Intracellular Signaling Peptides and Proteins/chemistry , Intracellular Signaling Peptides and Proteins/metabolism , Membrane Potentials , Models, Biological , Myristoylated Alanine-Rich C Kinase Substrate , Phosphatidylinositol 4,5-Diphosphate , Phosphatidylinositol Phosphates/chemistry , Phosphatidylinositol Phosphates/metabolism , Protein Binding , Static Electricity
14.
Biophys J ; 87(2): 1044-53, 2004 Aug.
Article in English | MEDLINE | ID: mdl-15298909

ABSTRACT

We used fluorescence correlation spectroscopy (FCS) to analyze the binding of fluorescently labeled peptides to lipid vesicles and compared the deduced binding constants to those obtained using other techniques. We used a well-characterized peptide corresponding to the basic effector domain of myristoylated alanine-rich C kinase substrate, MARCKS(151-175), that was fluorescently labeled with Alexa488, and measured its binding to large unilamellar vesicles (diameter approximately 100 nm) composed of phosphatidylcholine and phosphatidylserine or phosphatidylinositol 4,5-bisphosphate. Because the large unilamellar vesicles are significantly larger than the peptide, the correlation times for the free and bound peptide could be distinguished using single color autocorrelation measurements. The molar partition coefficients calculated from the FCS measurements were comparable to those obtained from binding measurements of radioactively labeled MARCKS(151-175) using a centrifugation technique. Moreover, FCS can measure binding of peptides present at very low concentrations (1-10 nmolar), which is difficult or impossible with most other techniques. Our data indicate FCS can be an accurate and valuable tool for studying the interaction of peptides and proteins with lipid membranes.


Subject(s)
Intracellular Signaling Peptides and Proteins/chemistry , Liposomes/chemistry , Membrane Proteins/chemistry , Spectrometry, Fluorescence/methods , Binding Sites , Myristoylated Alanine-Rich C Kinase Substrate , Peptides/chemistry , Protein Binding , Protein Structure, Tertiary , Proteins/chemistry
15.
Curr Biol ; 14(6): R250-2, 2004 Mar 23.
Article in English | MEDLINE | ID: mdl-15043839

ABSTRACT

An important new structure suggests the BAR domain is a membrane-binding module that can both produce and sense membrane curvature. BAR resembles a banana that binds membranes electrostatically through its positively charged, concave surface.


Subject(s)
Lipid Bilayers/metabolism , Liposomes/metabolism , Nerve Tissue Proteins/metabolism , ADP-Ribosylation Factors/metabolism , Animals , Biophysical Phenomena , Biophysics , Drosophila , GTPase-Activating Proteins/metabolism , Nerve Tissue Proteins/physiology , Protein Structure, Tertiary/physiology , Static Electricity
16.
Biophys J ; 86(4): 1969-86, 2004 Apr.
Article in English | MEDLINE | ID: mdl-15041641

ABSTRACT

The multivalent acidic phospholipid phosphatidylinositol 4,5-bisphosphate (PI(4,5)P2) plays a key role in many biological processes. Recent studies show that unstructured clusters of basic residues from a number of peripheral proteins can laterally sequester PI(4,5)P2 in membranes. Specifically, experiments suggest that the basic effector domain of the myristoylated alanine-rich C kinase substrate (MARCKS), or a peptide corresponding to this domain, MARCKS(151-175), sequesters several PI(4,5)P2 and that this sequestration is due to nonspecific electrostatic interactions. Here, we use the finite difference Poisson-Boltzmann method to test this hypothesis by calculating the electrostatic free energy of lateral sequestration of PI(4,5)P2 by membrane-adsorbed basic peptides: Lys-7, Lys-13, and FA-MARCKS(151-175), a peptide based on MARCKS(151-175). In agreement with experiments, we find that the electrostatic free energy becomes more favorable when: 1), Lys-13 and FA-MARCKS(151-175) sequester several PI(4,5)P2; 2), the linear charge density of the basic peptide increases; 3), the mol percent monovalent acidic lipid in the membrane decreases; and 4), the ionic strength of the solution decreases. In addition, the electrostatic sequestration free energy is in excess of the entropic penalty associated with localizing PI(4,5)P2. Our calculations, thus, provide a structural and quantitative description of the observed interaction of PI(4,5)P2 with membrane-adsorbed basic sequences.


Subject(s)
Algorithms , Intracellular Signaling Peptides and Proteins , Lipid Bilayers/chemistry , Lipoproteins/chemistry , Lysine/chemistry , Membrane Proteins/chemistry , Phosphatidylinositol 4,5-Diphosphate/chemistry , Myristoylated Alanine-Rich C Kinase Substrate , Peptides/chemistry , Static Electricity
17.
Biophys J ; 86(4): 2188-207, 2004 Apr.
Article in English | MEDLINE | ID: mdl-15041659

ABSTRACT

The basic effector domain of myristoylated alanine-rich C kinase substrate (MARCKS), a major protein kinase C substrate, binds electrostatically to acidic lipids on the inner leaflet of the plasma membrane; interaction with Ca2+/calmodulin or protein kinase C phosphorylation reverses this binding. Our working hypothesis is that the effector domain of MARCKS reversibly sequesters a significant fraction of the L-alpha-phosphatidyl-D-myo-inositol 4,5-bisphosphate (PIP2) on the plasma membrane. To test this, we utilize three techniques that measure the ability of a peptide corresponding to its effector domain, MARCKS(151-175), to sequester PIP2 in model membranes containing physiologically relevant fractions (15-30%) of the monovalent acidic lipid phosphatidylserine. First, we measure fluorescence resonance energy transfer from Bodipy-TMR-PIP2 to Texas Red MARCKS(151-175) adsorbed to large unilamellar vesicles. Second, we detect quenching of Bodipy-TMR-PIP2 in large unilamellar vesicles when unlabeled MARCKS(151-175) binds to vesicles. Third, we identify line broadening in the electron paramagnetic resonance spectra of spin-labeled PIP2 as unlabeled MARCKS(151-175) adsorbs to vesicles. Theoretical calculations (applying the Poisson-Boltzmann relation to atomic models of the peptide and bilayer) and experimental results (fluorescence resonance energy transfer and quenching at different salt concentrations) suggest that nonspecific electrostatic interactions produce this sequestration. Finally, we show that the PLC-delta1-catalyzed hydrolysis of PIP2, but not binding of its PH domain to PIP2, decreases markedly as MARCKS(151-175) sequesters most of the PIP2.


Subject(s)
Cell Membrane/chemistry , Intracellular Signaling Peptides and Proteins , Lipoproteins/chemistry , Membrane Proteins/chemistry , Phosphatidylinositol 4,5-Diphosphate/chemistry , Phospholipids/chemistry , Amino Acid Sequence , Fluorescence Resonance Energy Transfer , Lipid Bilayers , Molecular Sequence Data , Myristoylated Alanine-Rich C Kinase Substrate , Phosphatidylcholines/chemistry , Phosphatidylserines/chemistry , Type C Phospholipases/chemistry
18.
J Biol Chem ; 278(24): 21459-66, 2003 Jun 13.
Article in English | MEDLINE | ID: mdl-12670959

ABSTRACT

Electrostatic interactions with positively charged regions of membrane-associated proteins such as myristoylated alanine-rich C kinase substrate (MARCKS) may have a role in regulating the level of free phosphatidylinositol 4,5-bisphosphate (PI(4,5)P2) in plasma membranes. Both the MARCKS protein and a peptide corresponding to the effector domain (an unstructured region that contains 13 basic residues and 5 phenylalanines), MARCKS-(151-175), laterally sequester the polyvalent lipid PI(4,5)P2 in the plane of a bilayer membrane with high affinity. We used high resolution magic angle spinning NMR to establish the location of MARCKS-(151-175) in membrane bilayers, which is necessary to understand the sequestration mechanism. Measurements of cross-relaxation rates in two-dimensional nuclear Overhauser enhancement spectroscopy NMR experiments show that the five Phe rings of MARCKS-(151-175) penetrate into the acyl chain region of phosphatidylcholine bilayers containing phosphatidylglycerol or PI(4,5)P2. Specifically, we observed strong cross-peaks between the aromatic protons of the Phe rings and the acyl chain protons of the lipids, even for very short (50 ms) mixing times. The position of the Phe rings implies that the adjacent positively charged amino acids in the peptide are close to the level of the negatively charged lipid phosphates. The deep location of the MARCKS peptide in the polar head group region should enhance its electrostatic sequestration of PI(4,5)P2 by an "image charge" mechanism. Moreover, this location has interesting implications for membrane curvature and local surface pressure effects and may be relevant to a wide variety of other proteins with basic-aromatic clusters, such as phospholipase D, GAP43, SCAMP2, and the N-methyl-d-aspartate receptor.


Subject(s)
Lipid Bilayers/metabolism , Peptides/chemistry , Phenylalanine/chemistry , Alanine/chemistry , Cell Membrane/metabolism , Dimyristoylphosphatidylcholine/chemistry , Esters/chemistry , Lipid Metabolism , Lipids/chemistry , Magnetic Resonance Spectroscopy , Models, Chemical , Peptide Biosynthesis , Phosphatidylglycerols/chemistry , Phosphatidylinositol 4,5-Diphosphate/chemistry , Phospholipase D/metabolism , Protein Binding , Protein Structure, Tertiary , Receptors, N-Methyl-D-Aspartate/chemistry , Signal Transduction
19.
J Cell Biol ; 159(6): 1039-49, 2002 Dec 23.
Article in English | MEDLINE | ID: mdl-12486109

ABSTRACT

Phospholipase D (PLD) generates lipid signals that coordinate membrane trafficking with cellular signaling. PLD activity in vitro and in vivo is dependent on phosphoinositides with a vicinal 4,5-phosphate pair. Yeast and mammalian PLDs contain an NH2-terminal pleckstrin homology (PH) domain that has been speculated to specify both subcellular localization and regulation of PLD activity through interaction with phosphatidylinositol 4,5-bisphosphate (PI[4,5]P2). We report that mutation of the PH domains of yeast and mammalian PLD enzymes generates catalytically active PI(4,5)P2-regulated enzymes with impaired biological functions. Disruption of the PH domain of mammalian PLD2 results in relocalization of the protein from the PI(4,5)P2-containing plasma membrane to endosomes. As a result of this mislocalization, mutations within the PH domain render the protein unresponsive to activation in vivo. Furthermore, the integrity of the PH domain is vital for yeast PLD function in both meiosis and secretion. Binding of PLD2 to model membranes is enhanced by acidic phospholipids. Studies with PLD2-derived peptides suggest that this binding involves a previously identified polybasic motif that mediates activation of the enzyme by PI(4,5)P2. By comparison, the PLD2 PH domain binds PI(4,5)P2 with lower affinity but sufficient selectivity to function in concert with the polybasic motif to target the protein to PI(4,5)P2-rich membranes. Phosphoinositides therefore have a dual role in PLD regulation: membrane targeting mediated by the PH domain and stimulation of catalysis mediated by the polybasic motif.


Subject(s)
Gene Expression Regulation, Enzymologic , Phosphatidylinositols/physiology , Phospholipase D/metabolism , Amino Acid Motifs , Amino Acid Sequence , Catalysis , Cell Line , Cell Membrane/enzymology , Detergents/pharmacology , Endosomes/metabolism , Enzyme Activation , Fungal Proteins/metabolism , Genotype , HeLa Cells , Humans , Immunoblotting , Lipids/pharmacology , Microscopy, Confocal , Models, Genetic , Molecular Sequence Data , Mutation , Peptide Biosynthesis , Peptides/chemistry , Plasmids/metabolism , Precipitin Tests , Protein Binding , Protein Structure, Tertiary , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Sequence Homology, Amino Acid , Subcellular Fractions , Temperature , Transfection , Type C Phospholipases/metabolism
20.
J Biol Chem ; 277(37): 34401-12, 2002 Sep 13.
Article in English | MEDLINE | ID: mdl-12097325

ABSTRACT

A peptide corresponding to the basic (+13), unstructured effector domain of myristoylated alanine-rich C kinase substrate (MARCKS) binds strongly to membranes containing phosphatidylinositol 4,5-bisphosphate (PIP(2)). Although aromatic residues contribute to the binding, three experiments suggest the binding is driven mainly by nonspecific local electrostatic interactions. First, peptides with 13 basic residues, Lys-13 and Arg-13, bind to PIP(2)-containing vesicles with the same high affinity as the effector domain peptide. Second, removing basic residues from the effector domain peptide reduces the binding energy by an amount that correlates with the number of charges removed. Third, peptides corresponding to a basic region in GAP43 and MARCKS effector domain-like regions in other proteins (e.g. MacMARCKS, adducin, Drosophila A kinase anchor protein 200, and N-methyl-d-aspartate receptor) also bind with an energy that correlates with the number of basic residues. Kinetic measurements suggest the effector domain binds to several PIP(2). Theoretical calculations show the effector domain produces a local positive potential, even when bound to a bilayer with 33% monovalent acidic lipids, and should thus sequester PIP(2) laterally. This electrostatic sequestration was observed experimentally using a phospholipase C assay. Our results are consistent with the hypothesis that MARCKS could reversibly sequester much of the PIP(2) in the plasma membrane.


Subject(s)
Intracellular Signaling Peptides and Proteins , Membrane Proteins , Phosphatidylinositol 4,5-Diphosphate/chemistry , Phosphoproteins/chemistry , Amino Acid Sequence , Binding Sites , Molecular Sequence Data , Myristoylated Alanine-Rich C Kinase Substrate , Peptide Fragments/chemistry , Peptide Fragments/metabolism , Phosphatidylinositol 4,5-Diphosphate/metabolism , Phosphoproteins/metabolism , Static Electricity
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