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1.
Proc Natl Acad Sci U S A ; 118(7)2021 02 16.
Article in English | MEDLINE | ID: mdl-33579823

ABSTRACT

Human adult muscle-type acetylcholine receptors are heteropentameric ion channels formed from four different, but evolutionarily related, subunits. These subunits assemble with a precise stoichiometry and arrangement such that two chemically distinct agonist-binding sites are formed between specific subunit pairs. How this subunit complexity evolved and became entrenched is unclear. Here we show that a single historical amino acid substitution is able to constrain the subunit stoichiometry of functional acetylcholine receptors. Using a combination of ancestral sequence reconstruction, single-channel electrophysiology, and concatenated subunits, we reveal that an ancestral ß-subunit can not only replace the extant ß-subunit but can also supplant the neighboring δ-subunit. By forward evolving the ancestral ß-subunit with a single amino acid substitution, we restore the requirement for a δ-subunit for functional channels. These findings reveal that a single historical substitution necessitates an increase in acetylcholine receptor complexity and, more generally, that simple stepwise mutations can drive subunit entrenchment in this model heteromeric protein.


Subject(s)
Amino Acid Substitution , Protein Multimerization , Receptors, Nicotinic/genetics , Cell Line , Evolution, Molecular , Humans , Protein Binding , Protein Domains , Protein Subunits/chemistry , Protein Subunits/genetics , Protein Subunits/metabolism , Receptors, Nicotinic/chemistry , Receptors, Nicotinic/metabolism
2.
Elife ; 92020 08 11.
Article in English | MEDLINE | ID: mdl-32779569

ABSTRACT

One key bottleneck in understanding the human genome is the relative under-characterization of 90% of protein coding regions. We report a collection of 1200 transgenic zebrafish strains made with the gene-break transposon (GBT) protein trap to simultaneously report and reversibly knockdown the tagged genes. Protein trap-associated mRFP expression shows previously undocumented expression of 35% and 90% of cloned genes at 2 and 4 days post-fertilization, respectively. Further, investigated alleles regularly show 99% gene-specific mRNA knockdown. Homozygous GBT animals in ryr1b, fras1, tnnt2a, edar and hmcn1 phenocopied established mutants. 204 cloned lines trapped diverse proteins, including 64 orthologs of human disease-associated genes with 40 as potential new disease models. Severely reduced skeletal muscle Ca2+ transients in GBT ryr1b homozygous animals validated the ability to explore molecular mechanisms of genetic diseases. This GBT system facilitates novel functional genome annotation towards understanding cellular and molecular underpinnings of vertebrate biology and human disease.


The human genome counts over 20,000 genes, which can be turned on and off to create the proteins required for most of life processes. Once produced, proteins need move to specific locations in the cell, where they are able to perform their jobs. Despite striking scientific advances, 90% of human genes are still under-studied; where the proteins they code for go, and what they do remains unknown. Zebrafish share many genes with humans, but they are much easier to manipulate genetically. Here, Ichino et al. used various methods in zebrafish to create a detailed 'catalogue' of previously poorly understood genes, focusing on where the proteins they coded for ended up and the biological processes they were involved with. First, a genetic tool called gene-breaking transposons (GBTs) was used to create over 1,200 strains of genetically altered fish in which a specific protein was both tagged with a luminescent marker and unable to perform its role. Further analysis of 204 of these strains revealed new insight into the role of each protein, with many having unexpected roles and localisations. For example, in one zebrafish strain, the affected gene was similar to a human gene which, when inactivated, causes severe muscle weakness. These fish swam abnormally slowly and also had muscle problems, suggesting that the GBT fish strains could 'model' the human disease. This work sheds new light on the role of many previously poorly understood genes. In the future, similar collections of GBT fish strains could help researchers to study both normal human biology and disease. They could especially be useful in cases where the genes responsible for certain conditions are still difficult to identify.


Subject(s)
Gene Knockdown Techniques , Gene Library , Genes, Reporter , Zebrafish Proteins/genetics , Zebrafish/genetics , Animals , Animals, Genetically Modified/genetics , Animals, Genetically Modified/metabolism , RNA, Messenger/genetics , Zebrafish/metabolism , Zebrafish Proteins/metabolism
3.
Biochim Biophys Acta Proteins Proteom ; 1865(11 Pt B): 1522-1528, 2017 Nov.
Article in English | MEDLINE | ID: mdl-28844740

ABSTRACT

Global functions of nicotinic acetylcholine receptors, such as subunit cooperativity and compatibility, likely emerge from a network of amino acid residues distributed across the entire pentameric complex. Identification of such networks has stymied traditional approaches to acetylcholine receptor structure and function, likely due to the cryptic interdependency of their underlying amino acid residues. An emerging evolutionary biochemistry approach, which traces the evolutionary history of acetylcholine receptor subunits, allows for rational mapping of acetylcholine receptor sequence space, and offers new hope for uncovering the amino acid origins of these enigmatic properties.


Subject(s)
Evolution, Molecular , Receptors, Cholinergic/chemistry , Animals , Humans , Protein Structure, Tertiary , Receptors, Cholinergic/metabolism , Structure-Activity Relationship
4.
Structure ; 25(8): 1295-1302.e3, 2017 08 01.
Article in English | MEDLINE | ID: mdl-28689969

ABSTRACT

Acetylcholine receptors (AChRs) are members of a superfamily of proteins called pentameric ligand-gated ion channels, which are found in almost all forms of life and thus have a rich evolutionary history. Muscle-type AChRs are heteropentameric complexes assembled from four related subunits (α, ß, δ, and ɛ). Here we reconstruct the amino acid sequence of a ß subunit ancestor shared by humans and cartilaginous fishes (i.e., Torpedo). Then, by resurrecting this ancestral ß subunit and co-expressing it with human α, δ, and ɛ subunits, we show that despite 132 substitutions, the ancestral subunit is capable of forming human/ancestral hybrid AChRs. Whole-cell currents demonstrate that the agonist acetylcholine has reduced potency for hybrid receptors, while single-channel recordings reveal that hybrid receptors display reduced conductance and open probability. Our results outline a promising strategy for studies of AChR evolution aimed at identifying the amino acid origins of AChR structure and function.


Subject(s)
Fish Proteins/chemistry , Receptors, Cholinergic/chemistry , Sequence Homology, Amino Acid , Acetylcholine/metabolism , Amino Acid Substitution , Binding Sites , Cell Line , Evolution, Molecular , Fish Proteins/genetics , Fish Proteins/metabolism , Humans , Protein Binding , Receptors, Cholinergic/genetics , Receptors, Cholinergic/metabolism
5.
Cancer Lett ; 380(1): 163-73, 2016 09 28.
Article in English | MEDLINE | ID: mdl-27216979

ABSTRACT

Cholangiocarcinoma is a highly lethal cancer with limited therapeutic options. Recent genomic analysis of cholangiocarcinoma has revealed the presence of fibroblast growth factor receptor 2 (FGFR2) fusion proteins in up to 13% of intrahepatic cholangiocarcinoma (iCCA). FGFR fusions have been identified as a novel oncogenic and druggable target in a number of cancers. In this study, we established a novel cholangiocarcinoma patient derived xenograft (PDX) mouse model bearing an FGFR2-CCDC6 fusion protein from a metastatic lung nodule of an iCCA patient. Using this PDX model, we confirmed the ability of the FGFR inhibitors, ponatinib, dovitinib and BGJ398, to modulate FGFR signaling, inhibit cell proliferation and induce cell apoptosis in cholangiocarcinoma tumors harboring FGFR2 fusions. In addition, BGJ398 appeared to be superior in potency to ponatinib and dovitinib in this model. Our findings provide a strong rationale for the investigation of FGFR inhibitors, particularly BGJ398, as a therapeutic option for cholangiocarcinoma patients harboring FGFR2 fusions.


Subject(s)
Antineoplastic Agents/pharmacology , Bile Duct Neoplasms/drug therapy , Cholangiocarcinoma/drug therapy , Cytoskeletal Proteins/metabolism , Gene Fusion , Lung Neoplasms/drug therapy , Phenylurea Compounds/pharmacology , Pyrimidines/pharmacology , Receptor, Fibroblast Growth Factor, Type 2/antagonists & inhibitors , Receptor, Fibroblast Growth Factor, Type 2/metabolism , Animals , Apoptosis/drug effects , Benzimidazoles/pharmacology , Bile Duct Neoplasms/genetics , Bile Duct Neoplasms/metabolism , Bile Duct Neoplasms/pathology , Cell Proliferation/drug effects , Cholangiocarcinoma/genetics , Cholangiocarcinoma/metabolism , Cholangiocarcinoma/secondary , Cytoskeletal Proteins/genetics , Humans , Imidazoles/pharmacology , Interleukin Receptor Common gamma Subunit/deficiency , Interleukin Receptor Common gamma Subunit/genetics , Lung Neoplasms/genetics , Lung Neoplasms/metabolism , Lung Neoplasms/secondary , Matrix Metalloproteinase 2/metabolism , Matrix Metalloproteinase 3/metabolism , Matrix Metalloproteinase 9/metabolism , Mice, Inbred NOD , Mice, Knockout , Mice, SCID , Pyridazines/pharmacology , Quinolones/pharmacology , Receptor, Fibroblast Growth Factor, Type 2/genetics , Signal Transduction/drug effects , Time Factors , Tumor Burden/drug effects , Xenograft Model Antitumor Assays
6.
Cell Rep ; 15(3): 599-610, 2016 Apr 19.
Article in English | MEDLINE | ID: mdl-27068475

ABSTRACT

The androgen receptor (AR) is required for castration-resistant prostate cancer (CRPC) progression, but the function and disease relevance of AR-bound enhancers remain unclear. Here, we identify a group of AR-regulated enhancer RNAs (e.g., PSA eRNA) that are upregulated in CRPC cells, patient-derived xenografts (PDXs), and patient tissues. PSA eRNA binds to CYCLIN T1, activates P-TEFb, and promotes cis and trans target gene transcription by increasing serine-2 phosphorylation of RNA polymerase II (Pol II-Ser2p). We define an HIV-1 TAR RNA-like (TAR-L) motif in PSA eRNA that is required for CYCLIN T1 binding. Using TALEN-mediated gene editing we further demonstrate that this motif is essential for increased Pol II-Ser2p occupancy levels and CRPC cell growth. We have uncovered a P-TEFb activation mechanism and reveal altered eRNA expression that is related to abnormal AR function and may potentially be a therapeutic target in CRPC.


Subject(s)
Positive Transcriptional Elongation Factor B/metabolism , Prostatic Neoplasms, Castration-Resistant/genetics , RNA/metabolism , Receptors, Androgen/metabolism , Base Sequence , Cell Line, Tumor , Cell Proliferation , Cyclin T/metabolism , Enhancer Elements, Genetic/genetics , Gene Expression Regulation, Neoplastic , Genetic Loci , Humans , Male , Models, Biological , Nucleotide Motifs/genetics , Phosphorylation , Prostate-Specific Antigen/genetics , Prostatic Neoplasms, Castration-Resistant/pathology , Protein Binding , RNA Polymerase II/metabolism , Serine/metabolism , Up-Regulation/genetics
8.
Hum Gene Ther ; 27(6): 425-35, 2016 06.
Article in English | MEDLINE | ID: mdl-26986823

ABSTRACT

Customizable endonucleases such as transcription activator-like effector nucleases (TALENs) and clustered regularly interspaced short palindromic repeats/CRISPR-associated protein 9 (CRISPR/Cas9) enable rapid generation of mutant strains at genomic loci of interest in animal models and cell lines. With the accelerated pace of generating mutant alleles, genotyping has become a rate-limiting step to understanding the effects of genetic perturbation. Unless mutated alleles result in distinct morphological phenotypes, mutant strains need to be genotyped using standard methods in molecular biology. Classic restriction fragment length polymorphism (RFLP) or sequencing is labor-intensive and expensive. Although simpler than RFLP, current versions of allele-specific PCR may still require post-polymerase chain reaction (PCR) handling such as sequencing, or they are more expensive if allele-specific fluorescent probes are used. Commercial genotyping solutions can take weeks from assay design to result, and are often more expensive than assembling reactions in-house. Key components of commercial assay systems are often proprietary, which limits further customization. Therefore, we developed a one-step open-source genotyping method based on quantitative PCR. The allele-specific qPCR (ASQ) does not require post-PCR processing and can genotype germline mutants through either threshold cycle (Ct) or end-point fluorescence reading. ASQ utilizes allele-specific primers, a locus-specific reverse primer, universal fluorescent probes and quenchers, and hot start DNA polymerase. Individual laboratories can further optimize this open-source system as we completely disclose the sequences, reagents, and thermal cycling protocol. We have tested the ASQ protocol to genotype alleles in five different genes. ASQ showed a 98-100% concordance in genotype scoring with RFLP or Sanger sequencing outcomes. ASQ is time-saving because a single qPCR without post-PCR handling suffices to score genotypes. ASQ is cost-effective because universal fluorescent probes negate the necessity of designing expensive probes for each locus.


Subject(s)
Polymerase Chain Reaction/economics , Polymerase Chain Reaction/methods , Zebrafish Proteins/genetics , Zebrafish/genetics , Alleles , Animals , Cost-Benefit Analysis , DNA Primers , Genotype , Sequence Analysis, DNA
9.
Hum Gene Ther ; 27(6): 451-63, 2016 06.
Article in English | MEDLINE | ID: mdl-26854857

ABSTRACT

Transcription activator-like effectors (TALEs) are extremely effective, single-molecule DNA-targeting molecular cursors used for locus-specific genome science applications, including high-precision molecular medicine and other genome engineering applications. TALEs are used in genome engineering for locus-specific DNA editing and imaging, as artificial transcriptional activators and repressors, and for targeted epigenetic modification. TALEs as nucleases (TALENs) are effective editing tools and offer high binding specificity and fewer sequence constraints toward the targeted genome than other custom nuclease systems. One bottleneck of broader TALE use is reagent accessibility. For example, one commonly deployed method uses a multitube, 5-day assembly protocol. Here we describe FusX, a streamlined Golden Gate TALE assembly system that (1) is backward compatible with popular TALE backbones, (2) is functionalized as a single-tube 3-day TALE assembly process, (3) requires only commonly used basic molecular biology reagents, and (4) is cost-effective. More than 100 TALEN pairs have been successfully assembled using FusX, and 27 pairs were quantitatively tested in zebrafish, with each showing high somatic and germline activity. Furthermore, this assembly system is flexible and is compatible with standard molecular biology laboratory tools, but can be scaled with automated laboratory support. To demonstrate, we use a highly accessible and commercially available liquid-handling robot to rapidly and accurately assemble TALEs using the FusX TALE toolkit. Together, the FusX system accelerates TALE-based genomic science applications from basic science screening work for functional genomics testing and molecular medicine applications.


Subject(s)
Genetic Engineering/methods , Genomics/methods , Transcription Activator-Like Effectors/genetics , Transcription Factors/metabolism , Animals , DNA-Binding Proteins/metabolism , Gene Editing , Gene Expression Regulation , Gene Targeting , Humans , Zebrafish/genetics , Zebrafish/metabolism
10.
PLoS One ; 10(6): e0130688, 2015.
Article in English | MEDLINE | ID: mdl-26110643

ABSTRACT

Skin disorders are widespread, but available treatments are limited. A more comprehensive understanding of skin development mechanisms will drive identification of new treatment targets and modalities. Here we report the Zebrafish Integument Project (ZIP), an expression-driven platform for identifying new skin genes and phenotypes in the vertebrate model Danio rerio (zebrafish). In vivo selection for skin-specific expression of gene-break transposon (GBT) mutant lines identified eleven new, revertible GBT alleles of genes involved in skin development. Eight genes--fras1, grip1, hmcn1, msxc, col4a4, ahnak, capn12, and nrg2a--had been described in an integumentary context to varying degrees, while arhgef25b, fkbp10b, and megf6a emerged as novel skin genes. Embryos homozygous for a GBT insertion within neuregulin 2a (nrg2a) revealed a novel requirement for a Neuregulin 2a (Nrg2a)-ErbB2/3-AKT signaling pathway governing the apicobasal organization of a subset of epidermal cells during median fin fold (MFF) morphogenesis. In nrg2a mutant larvae, the basal keratinocytes within the apical MFF, known as ridge cells, displayed reduced pAKT levels as well as reduced apical domains and exaggerated basolateral domains. Those defects compromised proper ridge cell elongation into a flattened epithelial morphology, resulting in thickened MFF edges. Pharmacological inhibition verified that Nrg2a signals through the ErbB receptor tyrosine kinase network. Moreover, knockdown of the epithelial polarity regulator and tumor suppressor lgl2 ameliorated the nrg2a mutant phenotype. Identifying Lgl2 as an antagonist of Nrg2a-ErbB signaling revealed a significantly earlier role for Lgl2 during epidermal morphogenesis than has been described to date. Furthermore, our findings demonstrated that successive, coordinated ridge cell shape changes drive apical MFF development, making MFF ridge cells a valuable model for investigating how the coordinated regulation of cell polarity and cell shape changes serves as a crucial mechanism of epithelial morphogenesis.


Subject(s)
Animal Fins/embryology , Neuregulins/metabolism , Oncogene Proteins v-erbB/metabolism , Organogenesis/genetics , Skin/embryology , Zebrafish Proteins/metabolism , Zebrafish/embryology , Alleles , Animal Fins/metabolism , Animals , Gene Expression Regulation, Developmental , Mutagenesis, Insertional , Neuregulins/genetics , Oncogene Proteins v-erbB/genetics , Proto-Oncogene Proteins c-akt/metabolism , Signal Transduction/genetics , Skin/metabolism , Zebrafish/genetics , Zebrafish/metabolism , Zebrafish Proteins/genetics
11.
Home Healthc Nurse ; 32(4): 243-7, 2014 Apr.
Article in English | MEDLINE | ID: mdl-24685757

ABSTRACT

Imagine for a moment being in a small, cold, dark, and dirty room. You haven't seen your family in months and you're not sure if you ever will again. When the drugs that you've given begin to wear off, you feel hunger pangs because you haven't eaten anything in more hours than you can count. You hear a door opening and are filled with paralyzing fear and dread. You are never quite sure who or what will greet you on the other side of that door. You may have to endure a brutal beating, you may be forced to take drugs, or you may be raped.


Subject(s)
Human Trafficking , Crime Victims , Human Trafficking/legislation & jurisprudence , Human Trafficking/prevention & control , Human Trafficking/psychology , Humans , Nurse's Role , Physical Examination , United States
12.
FASEB J ; 28(2): 594-602, 2014 Feb.
Article in English | MEDLINE | ID: mdl-24142570

ABSTRACT

Elevated serum heat shock protein 27 (HSP27) levels are atheroprotective; however, the role of HSP27 after arterial injury is unknown. Human endothelial progenitor cells (EPCs) were treated with recombinant (r)HSP27 (50 µg/ml) or its inactive C1 terminus, and gene expression was characterized before functional studies were performed in vitro and in vivo. Vascular endothelial growth factor (VEGF) was markedly up-regulated by rHSP27 (10- and 6-fold increases in mRNA and secretion, respectively). Pretreatment of EPCs with rHSP27 resulted in a 60% reduction in reendothelialization (RE) time in a scratch assay, an effect that was blocked with VEGF-neutralizing antibodies. Mice overexpressing HSP27 demonstrated more robust mobilization of EPCs at the time of arterial injury, as well as a 67% increase in RE and a 45% reduction in neointima (NI) formation at 28 d. Implantation of rHSP27-eluting stents in rabbit carotid arteries resulted in a marked improvement in RE at 7 and 28 d and transient attenuation of NI formation by 42% at 7 d. Hence, extracellular HSP27 up-regulated VEGF and improved EPC migration in vitro. Augmented systemic or local levels of HSP27 markedly improved RE after vascular injury, an effect that is of particular relevance to the safety profile of vascular stents.


Subject(s)
Carotid Artery Injuries/drug therapy , Carotid Artery Injuries/metabolism , Endothelium, Vascular/metabolism , HSP27 Heat-Shock Proteins/pharmacology , HSP27 Heat-Shock Proteins/therapeutic use , Neointima/drug therapy , Neointima/metabolism , Animals , Carotid Arteries/drug effects , Carotid Arteries/metabolism , Cells, Cultured , Endothelium, Vascular/drug effects , Enzyme-Linked Immunosorbent Assay , Female , Flow Cytometry , Gene Expression Profiling , Humans , Immunohistochemistry , Male , Mice , Mice, Transgenic , Rabbits , Real-Time Polymerase Chain Reaction , Vascular Endothelial Growth Factor A/metabolism
14.
Proc Natl Acad Sci U S A ; 110(15): 6199-204, 2013 Apr 09.
Article in English | MEDLINE | ID: mdl-23530237

ABSTRACT

Inactivating mutations of the SOST (sclerostin) gene are associated with overgrowth and sclerosis of the skeleton. To determine mechanisms by which increased amounts of calcium and phosphorus are accreted to enable enhanced bone mineralization in the absence of sclerostin, we measured concentrations of calciotropic and phosphaturic hormones, and urine and serum calcium and inorganic phosphorus in mice in which the sclerostin (sost) gene was replaced by the ß-D-galactosidase (lacZ) gene in the germ line. Knockout (KO) (sost(-/-)) mice had increased bone mineral density and content, increased cortical and trabecular bone thickness, and greater net bone formation as a result of increased osteoblast and decreased osteoclast surfaces compared with wild-type (WT) mice. ß-Galactosidase activity was detected in osteocytes of sost KO mice but was undetectable in WT mice. Eight-week-old, male sost KO mice had increased serum 1α,25-dihydroxyvitamin D, decreased 24,25-dihydroxyvitamin D, decreased intact fibroblast growth factor 23, and elevated inorganic phosphorus concentrations compared with age-matched WT mice. 25-Hydroxyvitamin D 1α-hydroxylase cytochrome P450 (cyp27B1) mRNA was increased in kidneys of sost KO mice compared with WT mice. Treatment of cultured proximal tubule cells with mouse recombinant sclerostin decreased cyp27B1 mRNA transcripts. Urinary calcium and renal fractional excretion of calcium were decreased in sost KO mice compared with WT mice. Sost KO and WT mice had similar serum calcium and parathyroid hormone concentrations. The data show that sclerostin not only alters bone mineralization, but also influences mineral metabolism by altering concentrations of hormones that regulate mineral accretion.


Subject(s)
Calcium/urine , Fibroblast Growth Factors/blood , Glycoproteins/metabolism , Vitamin D/blood , 25-Hydroxyvitamin D3 1-alpha-Hydroxylase/metabolism , Adaptor Proteins, Signal Transducing , Animals , Bone Density , Chromatography, Liquid , Female , Fibroblast Growth Factor-23 , Heterozygote , Intercellular Signaling Peptides and Proteins , Male , Mass Spectrometry , Mice , Mice, Knockout , Mutation , Osteoblasts/cytology , Osteoclasts/cytology , Osteocytes/cytology , X-Ray Microtomography , beta-Galactosidase/metabolism
15.
PLoS One ; 8(2): e55867, 2013.
Article in English | MEDLINE | ID: mdl-23409070

ABSTRACT

AIMS: Expression of Heat Shock Protein-27 (HSP27) is reduced in human coronary atherosclerosis. Over-expression of HSP27 is protective against the early formation of lesions in atherosclerosis-prone apoE(-/-) mice (apoE(-/-)HSP27(o/e)) - however, only in females. We now seek to determine if chronic HSP27 over-expression is protective in a model of advanced atherosclerosis in both male and female apoE(-/-) mice. METHODS AND RESULTS: After 12 weeks on a high fat diet, serum HSP27 levels rose more than 16-fold in male and female apoE(-/-)HSP27(o/e) mice, although females had higher levels than males. Relative to apoE(-/-) mice, female apoE(-/-)HSP27(o/e) mice showed reductions in aortic lesion area of 35% for en face and 30% for cross-sectional sinus tissue sections - with the same parameters reduced by 21% and 24% in male cohorts; respectively. Aortic plaques from apoE(-/-)HSP27(o/e) mice showed almost 50% reductions in the area occupied by cholesterol clefts and free cholesterol, with fewer macrophages and reduced apoptosis but greater intimal smooth muscle cell and collagen content. The analysis of the aortic mechanical properties showed increased vessel stiffness in apoE(-/-)HSP27(o/e) mice (41% in female, 34% in male) compare to apoE(-/-) counterparts. CONCLUSIONS: Chronic over-expression of HSP27 is atheroprotective in both sexes and coincides with reductions in lesion cholesterol accumulation as well as favorable plaque remodeling. These data provide new clues as to how HSP27 may improve not only the composition of atherosclerotic lesions but potentially their stability and resilience to plaque rupture.


Subject(s)
Aorta/metabolism , Aorta/pathology , Atherosclerosis/metabolism , Atherosclerosis/pathology , HSP27 Heat-Shock Proteins/metabolism , Plaque, Atherosclerotic , Animals , Apoptosis/genetics , Atherosclerosis/genetics , Cholesterol/metabolism , Collagen/metabolism , Disease Models, Animal , Female , Gene Expression , HSP27 Heat-Shock Proteins/genetics , Macrophages/metabolism , Macrophages/pathology , Male , Mice , Mice, Knockout , Myocytes, Smooth Muscle/metabolism , Myocytes, Smooth Muscle/pathology , Plaque, Atherosclerotic/genetics , Vascular Stiffness/genetics
16.
BMC Res Notes ; 5: 385, 2012 Jul 28.
Article in English | MEDLINE | ID: mdl-22838494

ABSTRACT

BACKGROUND: The 7S globulins are plant seed storage proteins that have been associated with the development of a number of human diseases, including peanut allergy. Immune reactivity to the wheat seed storage protein globulin-3 (Glo-3) has been associated with the development of the autoimmune disease type 1 diabetes in diabetes-prone rats and mice, as well as in a subset of human patients. FINDINGS: The present study characterized native wheat Glo-3 in salt-soluble wheat seed protein extracts. Glo-3-like peptides were observed primarily in the wheat embryo. Glo-3-like proteins varied significantly in their molecular masses and isoelectric points, as determined by two dimensional electrophoresis and immunoblotting with anti-Glo-3A antibodies. Five major polypeptide spots were identified by mass spectrometry and N-terminal sequencing as belonging to the Glo-3 family. CONCLUSIONS: These results in combination with our previous findings have allowed for the development of a hypothetical model of the post-translational events contributing to the wheat 7S globulin profile in mature wheat kernels.


Subject(s)
Globulins/metabolism , Plant Proteins/metabolism , Protein Processing, Post-Translational , Triticum/metabolism , Blotting, Western , Electrophoresis, Gel, Two-Dimensional , Endosperm/metabolism , Globulins/chemistry , Isoelectric Point , Models, Biological , Molecular Weight , Plant Proteins/chemistry , Sequence Analysis, Protein , Tandem Mass Spectrometry , Triticum/embryology
17.
Mol Endocrinol ; 26(9): 1630-42, 2012 Sep.
Article in English | MEDLINE | ID: mdl-22734042

ABSTRACT

The biological role of vitamin D receptors (VDR), which are abundantly expressed in developing zebrafish (Danio rerio) as early as 48 h after fertilization, and before the development of a mineralized skeleton and mature intestine and kidney, is unknown. We probed the role of VDR in developing zebrafish biology by examining changes in expression of RNA by whole transcriptome shotgun sequencing (RNA-seq) in fish treated with picomolar concentrations of the VDR ligand and hormonal form of vitamin D(3), 1α,25-dihydroxyvitamin D(3) [1α,25(OH)(2)D(3))].We observed significant changes in RNAs of transcription factors, leptin, peptide hormones, and RNAs encoding proteins of fatty acid, amino acid, xenobiotic metabolism, receptor-activator of NFκB ligand (RANKL), and calcitonin-like ligand receptor pathways. Early highly restricted, and subsequent massive changes in more than 10% of expressed cellular RNA were observed. At days post fertilization (dpf) 2 [24 h 1α,25(OH)(2)D(3)-treatment], only four RNAs were differentially expressed (hormone vs. vehicle). On dpf 4 (72 h treatment), 77 RNAs; on dpf 6 (120 h treatment) 1039 RNAs; and on dpf 7 (144 h treatment), 2407 RNAs were differentially expressed in response to 1α,25(OH)(2)D(3). Fewer RNAs (n = 481) were altered in dpf 7 larvae treated for 24 h with 1α,25(OH)(2)D(3) vs. those treated with hormone for 144 h. At dpf 7, in 1α,25(OH)(2)D(3)-treated larvae, pharyngeal cartilage was larger and mineralization was greater. Changes in expression of RNAs for transcription factors, peptide hormones, and RNAs encoding proteins integral to fatty acid, amino acid, leptin, calcitonin-like ligand receptor, RANKL, and xenobiotic metabolism pathways, demonstrate heretofore unrecognized mechanisms by which 1α,25(OH)(2)D(3) functions in vivo in developing eukaryotes.


Subject(s)
Metabolic Networks and Pathways/drug effects , Sequence Analysis, RNA/methods , Transcriptome/genetics , Vitamin D/analogs & derivatives , Animals , Metabolic Networks and Pathways/genetics , Receptors, Calcitriol/metabolism , Vitamin D/pharmacology , Zebrafish
18.
Gene Expr Patterns ; 12(7-8): 228-35, 2012.
Article in English | MEDLINE | ID: mdl-22575304

ABSTRACT

Sclerostin is a highly conserved, secreted, cystine-knot protein which regulates osteoblast function. Humans with mutations in the sclerostin gene (SOST), manifest increased axial and appendicular skeletal bone density with attendant complications. In adult bone, sclerostin is expressed in osteocytes and osteoblasts. Danio rerio sclerostin-like protein is closely related to sea bass sclerostin, and is related to chicken and mammalian sclerostins. Little is known about the expression of sclerostin in early developing skeletal or extra-skeletal tissues. We assessed sclerostin (sost) gene expression in developing zebrafish (D. rerio) embryos with whole mount is situ hybridization methods. The earliest expression of sost mRNA was noted during 12h post-fertilization (hpf). At 15 hpf, sost mRNA was detected in the developing nervous system and in Kupffer's vesicle. At 18, 20 and 22 hpf, expression in rhombic lip precursors was seen. By 24 hpf, expression in the upper and lower rhombic lip and developing spinal cord was noted. Expression in the rhombic lip and spinal cord persisted through 28 hpf and then diminished in intensity through 44 hpf. At 28 hpf, sost expression was noted in developing pharyngeal cartilage; expression in pharyngeal cartilage increased with time. By 48 hpf, sost mRNA was clearly detected in the developing pharyngeal arch cartilage. Sost mRNA was abundantly expressed in the pharyngeal arch cartilage, and in developing pectoral fins, 72, 96 and 120 hpf. Our study is the first detailed analysis of sost gene expression in early metazoan development.


Subject(s)
Bone and Bones/metabolism , Brain/metabolism , Cartilage/metabolism , Glycoproteins/genetics , Zebrafish Proteins/genetics , Zebrafish/embryology , Amino Acid Sequence , Animals , Bone and Bones/embryology , Brain/embryology , Cartilage/embryology , Embryo, Nonmammalian/metabolism , Gene Expression Regulation, Developmental , Glycoproteins/metabolism , In Situ Hybridization , Molecular Sequence Data , Organ Specificity , Phylogeny , Transcription, Genetic , Zebrafish/metabolism , Zebrafish Proteins/metabolism
19.
J Cardiovasc Pharmacol ; 58(4): 399-405, 2011 Oct.
Article in English | MEDLINE | ID: mdl-21697723

ABSTRACT

BACKGROUND: Recent studies suggest that modulation of estrogen receptor ß (ERß) may play a crucial role in maintaining vascular homeostasis. We hypothesized that selective ERß activation will attenuate atherogenesis via anti-inflammatory mechanisms. METHODS AND RESULTS: Atherosclerosis-prone apoE mice were ovariectomized and then fed a high-cholesterol diet with daily subcutaneous injections of the highly selective and potent ERß agonist (8ß-VE2) for 5 weeks. Compared with controls, treatment with 8ß-VE2 reduced aortic arch atherosclerotic lesion areas by 34% of total and 75% of dense lesions, while not altering the serum lipid profile. We attribute these observed vascular effects solely to ERß modulation as (1) treatment with the nonselective ER antagonist ICI 182,780 completely abrogated the beneficial vascular effects of 8ß-VE2 and (2) uterine weight (a sensitive indicator of ERα modulation) did not change with 8ß-VE2 treatment. Moreover, mice treated with 8ß-VE2 had reduced serum interleukin 1ß and tumor necrosis factor α levels. Finally, treatment of macrophages in vitro with 8ß-VE2 blocked the uptake of acetylated low-density lipoprotein, suppressed the extracellular levels of the inflammatory cytokine tumor necrosis factor α, and enhanced the extracellular levels of the antiatherogenic/anti-inflammatory protein heat shock protein 27. CONCLUSIONS: Selective ERß activation by 8ß-VE2 attenuates atherogenesis and is associated with favorable modulation of vascular inflammation.


Subject(s)
Apolipoproteins E/genetics , Atherosclerosis/prevention & control , Estrogen Receptor beta/drug effects , Animals , Anti-Inflammatory Agents/pharmacology , Disease Models, Animal , Estradiol/analogs & derivatives , Estradiol/pharmacology , Estrogen Receptor beta/agonists , Estrogen Receptor beta/metabolism , Female , Fulvestrant , Inflammation/drug therapy , Inflammation/pathology , Interleukin-1beta/blood , Macrophages/metabolism , Mice , Mice, Knockout , Organ Size/drug effects , Ovariectomy , Tumor Necrosis Factor-alpha/blood , Uterus/drug effects , Uterus/metabolism
20.
J Clin Endocrinol Metab ; 96(7): E1159-62, 2011 Jul.
Article in English | MEDLINE | ID: mdl-21543425

ABSTRACT

BACKGROUND: Sclerostin alters bone formation. The precise and reproducible measurement of sclerostin concentrations in biological samples is important for assessment of metabolic bone disease. We determined sclerostin concentrations in serum and plasma using two commercially available ELISA. METHODS: We measured sclerostin concentrations in serum or heparin-plasma obtained from 25 normal human subjects using two commercial ELISA available from Biomedica Medizinprodukte GmbH and TECOmedical AG. RESULTS: With the Biomedica assay, serum sclerostin concentrations were 0.99 ± 0.12 ng/ml (mean ± sem), and plasma concentrations were 1.47 ± 0.13 ng/ml (paired t test, P < 0.001). With the TECO assay, serum sclerostin levels were 0.71 ± 0.05 ng/ml, and plasma sclerostin concentrations were 0.80 ± 0.06 ng/ml (paired t test, P < 0.001). Serum and plasma sclerostin concentrations were significantly different when determined by the two assays (serum, P = 0.015; plasma, P < 0.001). Recovery of added recombinant sclerostin to serum was less than expected with both Biomedica and TECO assays (P < 0.001, paired t test). CONCLUSIONS: The concentrations of sclerostin in serum and plasma are different when determined by the two assays. Serum or plasma sclerostin concentrations with current assays should be interpreted with caution. The data suggest that the same assay should be used for comparing groups of patients or patients being followed longitudinally. Standardization of sclerostin assays is required before being introduced into general clinical laboratory use.


Subject(s)
Bone Morphogenetic Proteins/blood , Immunoenzyme Techniques , Adaptor Proteins, Signal Transducing , Adult , Female , Genetic Markers , Humans , Male , Middle Aged
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