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1.
Nanomaterials (Basel) ; 14(11)2024 May 23.
Article in English | MEDLINE | ID: mdl-38869537

ABSTRACT

Silver nanoparticles (Ag NPs) have been produced by low-dose (1-20 kGy) gamma irradiation of silver nitrate in the presence of graphene-based material (graphene oxide or electrochemically exfoliated graphene). The large surface area of those graphene-based materials combined with the presence of oxygen-containing functional groups on the surface provided successful nucleation and growth of Ag nanoparticles, which resulted in a uniformly covered graphene surface. The obtained Ag nanoparticles were spherical with a predominant size distribution of 10-50 nm for graphene oxide and 10-100 nm for electrochemically exfoliated graphene. The photothermal efficiency measurement showed a temperature increase upon exposure to a 532 nm laser for all samples and the highest photothermal efficiency was measured for the graphene oxide/Ag NP sample prepared at 5 kGy. Electromagnetic interference (EMI) shielding efficiency measurements showed poor shielding for the composites prepared with graphene oxide. On the other hand, all composites prepared with electrochemically exfoliated graphene showed EMI shielding to some extent, and the best performance was measured for the samples prepared at 5 and 20 kGy doses.

2.
Nanoscale Adv ; 6(13): 3251-3284, 2024 Jun 25.
Article in English | MEDLINE | ID: mdl-38933866

ABSTRACT

The frictional behavior of one-dimensional (1D) materials, including nanotubes, nanowires, and nanofibers, significantly influences the efficient fabrication, functionality, and reliability of innovative devices integrating 1D components. Such devices comprise piezoelectric and triboelectric nanogenerators, biosensing and implantable devices, along with biomimetic adhesives based on 1D arrays. This review compiles and critically assesses recent experimental techniques for exploring the frictional behavior of 1D materials. Specifically, it underscores various measurement methods and technologies employing atomic force microscopy, electron microscopy, and optical microscopy nanomanipulation. The emphasis is on their primary applications and challenges in measuring and characterizing the frictional behavior of 1D materials. Additionally, we discuss key accomplishments over the past two decades in comprehending the frictional behaviors of 1D materials, with a focus on factors such as materials combination, interface roughness, environmental humidity, and non-uniformity. Finally, we offer a brief perspective on ongoing challenges and future directions, encompassing the systematic investigation of the testing environment and conditions, as well as the modification of surface friction through surface alterations.

3.
G3 (Bethesda) ; 14(4)2024 04 03.
Article in English | MEDLINE | ID: mdl-38184845

ABSTRACT

The SAM1 and SAM2 genes encode for S-Adenosylmethionine (AdoMet) synthetase enzymes, with AdoMet serving as the main cellular methyl donor. We have previously shown that independent deletion of these genes alters chromosome stability and AdoMet concentrations in opposite ways in Saccharomyces cerevisiae. To characterize other changes occurring in these mutants, we grew wildtype, sam1Δ/sam1Δ, and sam2Δ/sam2Δ strains in 15 different Phenotypic Microarray plates with different components and measured growth variations. RNA-Sequencing was also carried out on these strains and differential gene expression determined for each mutant. We explored how the phenotypic growth differences are linked to the altered gene expression, and hypothesize mechanisms by which loss of the SAM genes and subsequent AdoMet level changes, impact pathways and processes. We present 6 stories, discussing changes in sensitivity or resistance to azoles, cisplatin, oxidative stress, arginine biosynthesis perturbations, DNA synthesis inhibitors, and tamoxifen, to demonstrate the power of this novel methodology to broadly profile changes due to gene mutations. The large number of conditions that result in altered growth, as well as the large number of differentially expressed genes with wide-ranging functionality, speaks to the broad array of impacts that altering methyl donor abundance can impart. Our findings demonstrate that some cellular changes are directly related to AdoMet-dependent methyltransferases and AdoMet availability, some are directly linked to the methyl cycle and its role in production of several important cellular components, and others reveal impacts of SAM gene mutations on previously unconnected pathways.


Subject(s)
S-Adenosylmethionine , Saccharomyces cerevisiae , Saccharomyces cerevisiae/metabolism , S-Adenosylmethionine/metabolism , Mutation , Methionine Adenosyltransferase/genetics , Methionine Adenosyltransferase/metabolism , Base Sequence
4.
bioRxiv ; 2023 Jun 10.
Article in English | MEDLINE | ID: mdl-37333147

ABSTRACT

The SAM1 and SAM2 genes encode for S-AdenosylMethionine (AdoMet) synthetase enzymes, with AdoMet serving as the main methyl donor. We have previously shown that independent deletion of these genes alters chromosome stability and AdoMet concentrations in opposite ways in S. cerevisiae. To characterize other changes occurring in these mutants, we grew wildtype, sam1∆/sam1∆, and sam2∆/sam2∆ strains in 15 different Phenotypic Microarray plates with different components, equal to 1440 wells, and measured for growth variations. RNA-Sequencing was also carried out on these strains and differential gene expression determined for each mutant. In this study, we explore how the phenotypic growth differences are linked to the altered gene expression, and thereby predict the mechanisms by which loss of the SAM genes and subsequent AdoMet level changes, impact S. cerevisiae pathways and processes. We present six stories, discussing changes in sensitivity or resistance to azoles, cisplatin, oxidative stress, arginine biosynthesis perturbations, DNA synthesis inhibitors, and tamoxifen, to demonstrate the power of this novel methodology to broadly profile changes due to gene mutations. The large number of conditions that result in altered growth, as well as the large number of differentially expressed genes with wide-ranging functionality, speaks to the broad array of impacts that altering methyl donor abundance can impart, even when the conditions tested were not specifically selected as targeting known methyl involving pathways. Our findings demonstrate that some cellular changes are directly related to AdoMet-dependent methyltransferases and AdoMet availability, some are directly linked to the methyl cycle and its role is production of several important cellular components, and others reveal impacts of SAM gene mutations on previously unconnected pathways.

5.
PLoS One ; 18(4): e0282295, 2023.
Article in English | MEDLINE | ID: mdl-37018167

ABSTRACT

Recently, football has seen the creation of various novel, ubiquitous metrics used throughout clubs' analytics departments. These can influence many of their day-to-day operations ranging from financial decisions on player transfers, to evaluation of team performance. At the forefront of this scientific movement is the metric expected goals, a measure which allows analysts to quantify how likely a given shot is to result in a goal however, xG models have not until this point considered using important features, e.g., player/team ability and psychological effects, and is not widely trusted by everyone in the wider football community. This study aims to solve both these issues through the implementation of machine learning techniques by, modelling expected goals values using previously untested features and comparing the predictive ability of traditional statistics against this newly developed metric. Error values from the expected goals models built in this work were shown to be competitive with optimal values from other papers, and some of the features added in this study were revealed to have a significant impact on expected goals model outputs. Secondly, not only was expected goals found to be a superior predictor of a football team's future success when compared to traditional statistics, but also our results outperformed those collected from an industry leader in the same area.


Subject(s)
Athletic Performance , Football , Soccer , Athletic Performance/psychology , Motivation , Benchmarking
6.
Proc Biol Sci ; 288(1961): 20211213, 2021 10 27.
Article in English | MEDLINE | ID: mdl-34702078

ABSTRACT

The deep sea has been described as the last major ecological frontier, as much of its biodiversity is yet to be discovered and described. Beaked whales (ziphiids) are among the most visible inhabitants of the deep sea, due to their large size and worldwide distribution, and their taxonomic diversity and much about their natural history remain poorly understood. We combine genomic and morphometric analyses to reveal a new Southern Hemisphere ziphiid species, Ramari's beaked whale, Mesoplodon eueu, whose name is linked to the Indigenous peoples of the lands from which the species holotype and paratypes were recovered. Mitogenome and ddRAD-derived phylogenies demonstrate reciprocally monophyletic divergence between M. eueu and True's beaked whale (M. mirus) from the North Atlantic, with which it was previously subsumed. Morphometric analyses of skulls also distinguish the two species. A time-calibrated mitogenome phylogeny and analysis of two nuclear genomes indicate divergence began circa 2 million years ago (Ma), with geneflow ceasing 0.35-0.55 Ma. This is an example of how deep sea biodiversity can be unravelled through increasing international collaboration and genome sequencing of archival specimens. Our consultation and involvement with Indigenous peoples offers a model for broadening the cultural scope of the scientific naming process.


Subject(s)
Genomics , Whales , Animals , Cell Nucleus , Phylogeny , Whales/anatomy & histology , Whales/genetics
7.
Elife ; 102021 04 27.
Article in English | MEDLINE | ID: mdl-33904409

ABSTRACT

Genetic tags allow rapid localization of tagged proteins in cells and tissues. APEX, an ascorbate peroxidase, has proven to be one of the most versatile and robust genetic tags for ultrastructural localization by electron microscopy (EM). Here, we describe a simple method, APEX-Gold, which converts the diffuse oxidized diaminobenzidine reaction product of APEX into a silver/gold particle akin to that used for immunogold labelling. The method increases the signal-to-noise ratio for EM detection, providing unambiguous detection of the tagged protein, and creates a readily quantifiable particulate signal. We demonstrate the wide applicability of this method for detection of membrane proteins, cytoplasmic proteins, and cytoskeletal proteins. The method can be combined with different EM techniques including fast freezing and freeze substitution, focussed ion beam scanning EM, and electron tomography. Quantitation of expressed APEX-fusion proteins is achievable using membrane vesicles generated by a cell-free expression system. These membrane vesicles possess a defined quantum of signal, which can act as an internal standard for determination of the absolute density of expressed APEX-fusion proteins. Detection of fusion proteins expressed at low levels in cells from CRISPR-edited mice demonstrates the high sensitivity of the APEX-Gold method.


Subject(s)
Electron Microscope Tomography/methods , Genetic Techniques , Imaging, Three-Dimensional/methods , Animals , Ascorbate Peroxidases , Freezing , Gold , Mice , Proteins
8.
Wellcome Open Res ; 6: 69, 2021.
Article in English | MEDLINE | ID: mdl-34017925

ABSTRACT

Light exposure has a profound impact on human physiology and behaviour. For example, light exposure at the wrong time can disrupt our circadian rhythms and acutely suppress the production of melatonin. In turn, appropriately timed light exposure can support circadian photoentrainment. Beginning with the discovery that melatonin production is acutely suppressed by bright light more than 40 years ago, understanding which aspects of light drive the 'non-visual' responses to light remains a highly active research area, with an important translational dimension and implications for "human-centric" or physiologically inspired architectural lighting design. In 2018, the International Commission on Illumination (CIE) standardised the spectral sensitivities for predicting the non-visual effects of a given spectrum of light with respect to the activation of the five photoreceptor classes in the human retina: the L, M and S cones, the rods, and the melanopsin-containing intrinsically photosensitive retinal ganglion cells (ipRGCs). Here, we described a novel, lean, user-friendly, open-access and open-source platform for calculating quantities related to light. The platform, called luox, enables researchers and research users in vision science, lighting research, chronobiology, sleep research and adjacent fields to turn spectral measurements into reportable quantities. The luox code base, released under the GPL-3.0 License, is modular and therefore extendable to other spectrum-derived quantities. luox calculations of CIE quantities and indices have been endorsed by the CIE following black-box validation.

9.
Nanotechnology ; 32(10)2020 Dec 10.
Article in English | MEDLINE | ID: mdl-33126231

ABSTRACT

The mechanisms responsible for the dielectric response of C-based microwave absorbers remain a long-standing theoretical question. Uncovering these mechanisms is critical to enhance their microwave absorption performance. To determine how different C forms alter the dielectric response of C-based absorbers, FeNi-capped carbon nanotubes (FeNi-CNTs) and FeNi-cored carbon nanoparticles (FeNi-CNPs) are synthesized, and a comparative study of their dielectric responses is then carried out in this study. The as-synthesized FeNi-CNTs and FeNi-CNPs have similar magnetic properties and complex permeabilities, but differ in complex permittivities. It is shown that FeNi-CNTs have a much stronger dielectric loss than FeNi-CNPs. At a thickness of 2.8 mm, a low optimal reflection loss of -32.2 dB and a broad effective absorption bandwidth of 8.0 GHz are achieved for FeNi-CNTs. Meanwhile, equivalent circuit models reveal that the CNT network of the FeNi-CNTs could introduce an electrical inductance that can effectively improve its dielectric loss capability. This study demonstrates that designing a composite with a tailored C form and composition is a successful strategy for tuning its microwave absorption performance. Furthermore, the equivalent circuit modeling is an effective tool for analyzing the dielectric response of the microwave absorbers, as is expected to be applicable for other metal-C composites.

10.
Nanoscale ; 12(15): 8237-8247, 2020 Apr 21.
Article in English | MEDLINE | ID: mdl-32236223

ABSTRACT

It is imperative to understand the interfacial adhesive behaviour of nanowires (NW) integrated into a nanoelectromechanical system in order to design commercialisable nanogenerators as well as ultrasensitive sensors. Currently available interfacial adhesion characterisation techniques that utilise in situ electron microscopy subject nanoscale systems to a high-vacuum, electron-irradiated environment, potentially altering their interfacial interactions. Alternatively, force-sensing techniques conducted in air do not provide visual feedback of the interface, and therefore can only indirectly deduce adhesive properties. Here, we present an interface characterisation technique that enforces ZnO NWs to remain partially delaminated on a Si substrate, and permits optical observation of their deformed condition in air. NWs are draped over a wedge and are allowed to conform to their minimum energy state. We evaluate the strain energy stored in the suspended segment of each NW by determining their deflected shape from interferometry. We show that utilising a tailored Euler-Bernoulli beam model which accounts for the tapering and irregularity of a NW is crucial for accurately evaluating their interfacial adhesion energy. A nominal energy per unit interface area value of [capital Gamma, Greek, macron]F-B,irr,taper = 51.1 ± 31.9 mJ m-2 is obtained for the ZnO NW-Si substrate interface; a magnitude lower than that found using electron microscopy, and higher than the upper-bound of the theoretically predicted van der Waals interaction energy of γvdW = 7.2 mJ m-2. This apparent discrepancy has significant implications for any nanotribological study conducted inside an electron microscope. The results also implicate electrostatic and capillary interactions as significant contributors towards a NW's adhesive behaviour during device operation.

11.
Sci Rep ; 9(1): 12723, 2019 08 30.
Article in English | MEDLINE | ID: mdl-31471538

ABSTRACT

Two types of Berardius are recognised by local whalers in Hokkaido, Japan. The first is the ordinary Baird's beaked whale, B. bairdii, whereas the other is much smaller and entirely black. Previous molecular phylogenetic analyses revealed that the black type is one recognisable taxonomic unit within the Berardius clade but is distinct from the two known Berardius species. To determine the characteristics of the black type, we summarised external morphology and skull osteometric data obtained from four individuals, which included three individuals from Hokkaido and one additional individual from the United States National Museum of Natural History collection. The whales differed from all of their congeners by having the following unique characters: a substantially smaller body size of physically mature individuals, proportionately shorter beak, and darker body colour. Thus, we conclude that the whales are a third Berardius species.


Subject(s)
Genetic Speciation , Phylogeny , Whales/classification , Animals , Echolocation , Humans , Japan , Pacific Ocean , Whales/genetics
12.
Zoological Lett ; 4: 30, 2018.
Article in English | MEDLINE | ID: mdl-30574356

ABSTRACT

Here we document the first stranding record of the pygmy right whale in the Northern Hemisphere-on the coast of The Gambia, Africa (NE Atlantic Ocean, around latitude 13° N)-a location in stark contrast to its current distribution exclusively south of the equator. The original specimen is now missing and untraceable, but a photo found in the files of the Marine Mammal Program, Smithsonian Institution shows sufficient diagnostic features that allow it to be taxonomically identified as the pygmy right whale, Caperea marginata, including: small body size; streamlined overall body shape; generally dark skin coloration; arched rostrum along the lateral margin; triangular and narrow rostrum in dorsal view; lack of head callosities; some fringes on the dorsal surface of the tongue; small and relatively posteriorly positioned dorsal fin; and small and dark-colored flipper. On the whole, a stranding of the pygmy right whale in the Northern Hemisphere, although likely to be a chance event, calls for more detailed studies of how climate change and ocean currents affect the evolution and distribution (re-patterning) of marine mammals and, ultimately, the entire marine ecosystem.

13.
Nanotechnology ; 29(22): 225705, 2018 Jun 01.
Article in English | MEDLINE | ID: mdl-29498626

ABSTRACT

The adhesion and friction between two Al2O3 nanowires (NWs) was characterized by the use of optical microscopy based nanomanipulation, with which peeling, shearing and sliding was performed. The elastically deformed shape of the NWs during peeling and shearing was used to calculate the adhesion and frictional forces; force sensing was not required. The obtained adhesion stress between two Al2O3 NWs varied from 0.14 to 0.25 MPa, lower than that observed for carbon nanotube junctions, and was attributed to van der Waals attraction. Stick-slip was observed during the shearing and sliding of two NWs, and was the consequence of discrete contact between surface asperities. The obtained static and kinetic frictional stresses varied from 0.7 to 1.3 MPa and 0.4 to 0.8 MPa, respectively; significantly greater than the obtained adhesion stress.

14.
Sci Rep ; 7(1): 9547, 2017 08 25.
Article in English | MEDLINE | ID: mdl-28842690

ABSTRACT

The elastic modulus of ZnO nanowires was measured using a resonance method based on laser Doppler effect and their fracture strains were determined via two-point bending with the aid of optical nanomanipulation. The elastic moduli of ZnO nanowires with diameters of 78 to 310 nm vary from 123 to 154 GPa, which are close to the bulk value of 140 GPa and independent of the diameters and surface defects. However, the fracture strains of the ZnO nanowires depend significantly on their diameters, increasing from 2.1% to 6.0% with the decrease in diameter from 316 to 114 nm. Post-mortem TEM analysis of the ends of the fractured nanowires revealed that fracture initiated at surface defects. The Weibull statistical analysis demonstrated that a greater defect depth led to a smaller fracture strain. The surface-defect dominated fracture should be an important consideration for the design and application of nanowire-based nanoelectromechanical systems.

15.
Sci Rep ; 7: 44907, 2017 03 21.
Article in English | MEDLINE | ID: mdl-28322351

ABSTRACT

The friction between Al2O3 nanowires and silicon substrates of different surface textures was characterised by use of optical manipulation. It was found that surface textures had significant effect on both the friction and the effective contact area between a nanowire and a substrate. A genetic algorithm was developed to determine the effective contact area between the nanowire and the textured substrate. The frictional force was found to be nearly proportional to the effective contact area, regardless of width, depth, spacing and orientation of the surface textures. Interlocking caused by textured grooves was not observed in this study.

16.
J Anat ; 228(1): 125-36, 2016 Jan.
Article in English | MEDLINE | ID: mdl-26391309

ABSTRACT

Underwater human activities and anthropogenic noise in our oceans may be a major source of habitat degradation for marine life. This issue was highlighted by the opening of the United States Eastern Seaboard for seismic oil and gas exploration in 2014, which generated massive media coverage and widespread concern that seismic surveys could kill or deafen whales. We discovered 11 new specimens of fractured and healed cetacean ear bones, out of a survey of 2127 specimens housed in museum collections. This rare condition has been previously reported only in two specimens of blue whales (Balaenoptera musculus) from the early 1900s, summarized by Fraser & Purves (1953). All of our new specimens are represented by species for which this condition had never been reported previously, including both baleen and toothed whales. The baleen whale specimens (Balaenoptera physalus, Balaenoptera borealis, Balaenoptera acutorostrata) were collected during Canadian commercial whaling operations in the Atlantic Ocean in the 1970s; the specimens include ear bones with well-healed fractures, demonstrating that baleen whales are capable of overcoming traumatic injury to the ears. The toothed whale specimens (Delphinus sp., Berardius bairdii) were found dead on beaches in 1972 and 2001, respectively, with less remodeled fractures. Thus, ear injuries may be more lethal to the echolocating toothed whales, which rely on hearing for navigation and foraging. We explore several hypotheses regarding how these injuries could have occurred, and conclude that the most parsimonious explanations appear to be both direct and indirect effects of lytic processes from disease or calcium depletion, or damage from external pressure waves. Although further research is required to confirm whether the fractures resulted from natural or human-induced events, this study underscores the importance of museum collections and the work of stranding networks in understanding the potential effects of modern human activities on marine mammal health.


Subject(s)
Ear, Middle/injuries , Skull Fractures/pathology , Animals , Environmental Exposure/adverse effects , Pressure/adverse effects , Skull Fractures/etiology , Whales
17.
Anat Rec (Hoboken) ; 297(4): 599-617, 2014 Apr.
Article in English | MEDLINE | ID: mdl-24639076

ABSTRACT

The erupted tusk of the narwhal exhibits sensory ability. The hypothesized sensory pathway begins with ocean water entering through cementum channels to a network of patent dentinal tubules extending from the dentinocementum junction to the inner pulpal wall. Circumpulpal sensory structures then signal pulpal nerves terminating near the base of the tusk. The maxillary division of the fifth cranial nerve then transmits this sensory information to the brain. This sensory pathway was first described in published results of patent dentinal tubules, and evidence from dissection of tusk nerve connection via the maxillary division of the fifth cranial nerve to the brain. New evidence presented here indicates that the patent dentinal tubules communicate with open channels through a porous cementum from the ocean environment. The ability of pulpal tissue to react to external stimuli is supported by immunohistochemical detection of neuronal markers in the pulp and gene expression of pulpal sensory nerve tissue. Final confirmation of sensory ability is demonstrated by significant changes in heart rate when alternating solutions of high-salt and fresh water are exposed to the external tusk surface. Additional supporting information for function includes new observations of dentinal tubule networks evident in unerupted tusks, female erupted tusks, and vestigial teeth. New findings of sexual foraging divergence documented by stable isotope and fatty acid results add to the discussion of the functional significance of the narwhal tusk. The combined evidence suggests multiple tusk functions may have driven the tooth organ system's evolutionary development and persistence.


Subject(s)
Dental Pulp/physiology , Sensation/physiology , Tooth/physiology , Animals , Dental Pulp/innervation , Diet , Female , Gene Expression , Microscopy, Electron, Scanning , Neurophysiology , Tooth/anatomy & histology , Whales
18.
Anat Rec (Hoboken) ; 295(6): 1006-16, 2012 Jun.
Article in English | MEDLINE | ID: mdl-22467529

ABSTRACT

Narwhal tusks, although well described and characterized within publications, are clouded by contradictory references, which refer to them as both incisors and canines. Vestigial teeth are briefly mentioned in the scientific literature with limited descriptions and no image renderings. This study first examines narwhal maxillary osteoanatomy to determine whether the erupted tusks are best described as incisiform or caniniform teeth. The study also offers evidence to support the evolutionary obsolescence of the vestigial teeth through anatomic, morphologic, and histologic descriptions. Examination of 131 skull samples, including 110 museum skull specimens and 21 harvested skulls, revealed the erupted tusks surrounded by maxillary bone over the entire length of their bone socket insertion, and are thus more accurately termed caniniform or canine teeth. The anatomy, morphology, and development of vestigial teeth in five skull samples are more fully described and documented. Vestigial tooth samples included 14 embedded pairs or individual teeth that were partially exposed or removed from the maxillary bone. Their location was posterior, ventral, and lateral to the tusks, although male vestigial teeth often exfoliate in the mouth lodging between the palatal tissue and underlying maxillary bone. Their myriad morphologies, sizes, and eruption patterns suggest that these teeth are no longer guided by function but rather by random germ cell differentiation and may eventually cease expression entirely. The conclusions reached are that the narwhal tusks are the expression of canine teeth and that vestigial teeth have no apparent functional characteristics and are following a pattern consistent with evolutionary obsolescence.


Subject(s)
Tooth/anatomy & histology , Whales/anatomy & histology , Animals , Female , Male , Skull/anatomy & histology , Terminology as Topic
19.
PLoS One ; 4(3): e4813, 2009.
Article in English | MEDLINE | ID: mdl-19283072

ABSTRACT

Disease introduction into the New World during colonial expansion is well documented and had a major impact on indigenous populations; however, few diseases have been associated with early human migrations into North America. During the late Pleistocene epoch, Asia and North America were joined by the Beringian Steppe ecosystem which allowed animals and humans to freely cross what would become a water barrier in the Holocene. Anthrax has clearly been shown to be dispersed by human commerce and trade in animal products contaminated with Bacillus anthracis spores. Humans appear to have brought B. anthracis to this area from Asia and then moved it further south as an ice-free corridor opened in central Canada approximately 13,000 ybp. In this study, we have defined the evolutionary history of Western North American (WNA) anthrax using 2,850 single nucleotide polymorphisms (SNPs) and 285 geographically diverse B. anthracis isolates. Phylogeography of the major WNA B. anthracis clone reveals ancestral populations in northern Canada with progressively derived populations to the south; the most recent ancestor of this clonal lineage is in Eurasia. Our phylogeographic patterns are consistent with B. anthracis arriving with humans via the Bering Land Bridge. This northern-origin hypothesis is highly consistent with our phylogeographic patterns and rates of SNP accumulation observed in current day B. anthracis isolates. Continent-wide dispersal of WNA B. anthracis likely required movement by later European colonizers, but the continent's first inhabitants may have seeded the initial North American populations.


Subject(s)
Anthrax/genetics , Bacillus anthracis/genetics , Polymorphism, Single Nucleotide , Bacillus anthracis/classification , Biological Evolution , Genome-Wide Association Study , Geography , Humans , North America , Phylogeny
20.
Anat Rec (Hoboken) ; 290(6): 581-95, 2007 Jun.
Article in English | MEDLINE | ID: mdl-17516423

ABSTRACT

Members of the Cetacean family Ziphiidae (Beaked whales) exhibit surprising diversity in stomach anatomy, particularly in the number of connecting chambers between the main and pyloric stomachs. Sixty-one stomachs of five beaked whale species were examined, including Berardius, Hyperoodon, Mesoplodon, Tasmacetus, and Ziphius. Specimens were obtained post mortem from beach-stranded individuals, with the exception of 30 Berardius specimens that were taken at a whaling station in Japan. Most specimens were collected by the Marine Mammal Program of the National Museum of Natural History, with the exception of one specimen of Mesoplodon steinegeri, which from the Los Angeles County Museum and one specimen of Tasmacetus from the Museum of New Zealand. Additional data are included from published accounts. A single species was examined for all of the genera but Mesoplodon, where there was material for 7 of 13 known species. The sample of Berardius bairdii was sufficient (n = 30) to determine species-specific variation in compartment counts. Chamber anatomy was explored by means of manual palpation. Results indicate that ziphiid stomachs can be separated into at least three principal groups: generalized ziphiid stomach (one main stomach, one pyloric stomach), derived stomach type I (two main stomachs, one pyloric stomach), and derived stomach type II (two main stomachs, two pyloric stomachs). Generalized stomachs are found in Hyperoodon, Tasmacetus, Ziphius, Mesoplodon densirostris, M. perrini, and M. stejnegeri. Derived stomachs of type I are found in Berardius, and of type II are found in Mesoplodon bidens, M. europaeus, and M. mirus. The ziphiids clearly form a distinct group of cetaceans in their utilization of differences in stomach morphology. These anatomical differences may serve to elucidate systematic relationships among the ziphiids. Further study is necessary to establish whether these differences correlate with specialized adaptations related to an aquatic environment.


Subject(s)
Stomach/anatomy & histology , Whales/anatomy & histology , Animals , Female , Genetic Variation , Male , Species Specificity , Stomach/physiology , Whales/physiology
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