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1.
Bioorg Khim ; 19(9): 894-904, 1993 Sep.
Article in Russian | MEDLINE | ID: mdl-8250981

ABSTRACT

A non-radioactive diagnosticum for plant viroid diseases has been designed, based on hybridization of a biotin-labeled 26-member oligonucleotide probe with the viroid RNA site identical for potato spindle tuber viroid and chrysanthemum stunt viroid. The biotin label has been introduced into the synthetic oligonucleotide probe by the high-yield acylation of the oligonucleotide aminoalkylamide with the biotin imidazolide or N-hydroxysuccinimide ester. Hybridization techniques have been elaborated for nucleic acids isolated from plant sap. The hybrids obtained have been detected with streptavidin and biotinylated alkaline phosphatase or with the covalent conjugate of streptavidin and alkaline phosphatase, the sensitivity being as low as 1 ng. The methodology used can be applied for revealing viroids and for large scale and quick investigation of plant cell cultures.


Subject(s)
Biotin/chemistry , Oligonucleotide Probes , Plant Diseases/microbiology , Viroids , Alkaline Phosphatase , Bacterial Proteins , Base Sequence , Molecular Sequence Data , Nucleic Acid Hybridization , Oligonucleotide Probes/chemistry , RNA, Viral/analysis , Streptavidin , Viroids/genetics
2.
Mol Biol (Mosk) ; 26(3): 540-5, 1992.
Article in Russian | MEDLINE | ID: mdl-1406609

ABSTRACT

A 26 base long oligodeoxyribonucleotide complementary to a common RNA sequence of potato spindle tuber viroid (PSTV) and chrysantemum stunt viroid (CSV) was synthesized. The 3'-end biotinylated one was used for the detection of PSTV and CSV RNA immobilized on nitrocellulose filters by nucleic acid hybridization. Visualization of hybridization results was performed by two ways, either by streptavidin-alkaline phosphatase conjugate or streptavidine and biotinylated alkaline phosphatase. It was possible to detect 0.65 ng of purified CSV and PSTV RNA. The suggested system of viroid diseases detection can be used by agricultural and horticultural enterprises.


Subject(s)
Biotin/chemistry , Oligodeoxyribonucleotides/chemistry , Plant Viruses/isolation & purification , Alkaline Phosphatase/analysis , Base Sequence , Molecular Sequence Data , Nucleic Acid Hybridization , Oligonucleotide Probes , Plant Diseases/microbiology , RNA, Viral/analysis
3.
Mol Biol (Mosk) ; 25(5): 1301-7, 1991.
Article in Russian | MEDLINE | ID: mdl-1753957

ABSTRACT

26 base long deoxyribonucleotide complementary to the lower part of the Central Conserved Region of chrysanthemum stund viroid (CSV) was used for synthesis of the first strand cDNA. The cDNA was cloned into plasmid vector pUC19 and the primary structure was determined. Cloned, full length cDNA was used as hybridisation probe for detection of CSV. It was possible to detect about 26 pg of purified CSV RNA immobilized on nitrocellulose filters using 32P-labeled probe. In the case of biotinylated probe it was possible to detect about 26 pg of purified CSV RNA visualizing results by streptavidin-alkaline phosphatase conjugates. It has been shown that such a cloned cDNA can be used for wide scale detection of CSV.


Subject(s)
Chrysanthemum cinerariifolium/microbiology , DNA, Viral/genetics , DNA/genetics , Plant Viruses/genetics , Plasmids , Virion/genetics , Base Sequence , Cloning, Molecular , Genes, Viral , Molecular Sequence Data , Nucleic Acid Hybridization , Virion/isolation & purification
4.
Bioorg Khim ; 12(3): 420-3, 1986 Mar.
Article in Russian | MEDLINE | ID: mdl-3008763

ABSTRACT

The nucleotide sequence of the 3'-terminal region of the cloned bovine leukaemia virus cDNA (1474 bp) was elucidated using both Sanger and Maxam-Gilbert techniques. This DNA region contains U3 and R parts of the BLV LTR and an upstream sequence with four open reading frames (ORF) of unknown function. The comparison of the nucleotide substitutions in these ORF with the two variants of proviral BLV DNA suggests that the only pX1 ORF possesses a coding function. The role of the pX1 protein is discussed.


Subject(s)
DNA, Viral/analysis , DNA/analysis , Leukemia Virus, Bovine/genetics , Retroviridae/genetics , Animals , Base Sequence , Cattle , Cloning, Molecular , DNA, Viral/genetics
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