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1.
Antimicrob Agents Chemother ; 53(5): 1884-91, 2009 May.
Article in English | MEDLINE | ID: mdl-19223619

ABSTRACT

Metronidazole resistance in Helicobacter pylori has been attributed to mutations in rdxA or frxA. Insufficient data correlating RdxA and/or FrxA with the resistant phenotype, and the emergence of resistant strains with no mutations in either rdxA or frxA, indicated that the molecular basis of H. pylori resistance to metronidazole required further characterization. The rdxA and frxA genes of four matched pairs of metronidazole-susceptible and -resistant strains were sequenced. The resistant strains had mutations in either rdxA, frxA, neither gene, or both genes. The reduction rates of five substrates suggested that metabolic differences between susceptible and resistant strains cannot be explained only by mutations in rdxA and/or frxA. A more global approach to understanding the resistance phenotype was taken by employing two-dimensional gel electrophoresis combined with tandem mass spectrometry analyses to identify proteins differentially expressed by the matched pair of strains with no mutations in rdxA or frxA. Proteins involved in the oxireduction of ferredoxin were downregulated in the resistant strain. Other redox enzymes, such as thioredoxin reductase, alkyl hydroperoxide reductase, and superoxide dismutase, showed a pI change in the resistant strain. The data suggested that metronidazole resistance involved more complex metabolic changes than specific gene mutations, and they provided evidence of a role for the intracellular redox potential in the development of resistance.


Subject(s)
Anti-Infective Agents , Drug Resistance, Bacterial , Helicobacter pylori/drug effects , Metronidazole , Anti-Infective Agents/metabolism , Anti-Infective Agents/pharmacology , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Drug Resistance, Bacterial/physiology , Electrophoresis, Gel, Two-Dimensional , FMN Reductase/genetics , FMN Reductase/metabolism , Gene Expression Profiling , Gene Expression Regulation, Bacterial , Helicobacter Infections/microbiology , Helicobacter pylori/enzymology , Helicobacter pylori/genetics , Helicobacter pylori/metabolism , Humans , Mass Spectrometry , Metronidazole/metabolism , Metronidazole/pharmacology , Microbial Sensitivity Tests , Mutation , Nitroreductases/genetics , Nitroreductases/metabolism , Oxidation-Reduction , Proteome
2.
Proc Natl Acad Sci U S A ; 98(24): 13844-9, 2001 Nov 20.
Article in English | MEDLINE | ID: mdl-11717441

ABSTRACT

The antimicrobial effect of nitric oxide (NO) is an essential part of innate immunity. The vigorous host response to the human gastric pathogen Helicobacter pylori fails to eradicate the organism, despite up-regulation of inducible NO synthase (iNOS) in the gastric mucosa. Here we report that wild-type strains of H. pylori inhibit NO production by activated macrophages at physiologic concentrations of l-arginine, the common substrate for iNOS and arginase. Inactivation of the gene rocF, encoding constitutively expressed arginase in H. pylori, restored high-output NO production by macrophages. By using HPLC analysis, we show that l-arginine is effectively consumed in the culture medium by wild-type but not arginase-deficient H. pylori. The substantially higher levels of NO generated by macrophages cocultured with rocF-deficient H. pylori resulted in efficient killing of the bacteria, whereas wild-type H. pylori exhibited no loss of survival under these conditions. Killing of the arginase-deficient H. pylori was NO-dependent, because peritoneal macrophages from iNOS(-/-) mice failed to affect the survival of the rocF mutant. Thus, bacterial arginase allows H. pylori to evade the immune response by down-regulating eukaryotic NO production.


Subject(s)
Arginase/metabolism , Bacterial Proteins , Helicobacter pylori/enzymology , Nitric Oxide/biosynthesis , Animals , Arginase/genetics , Arginase/physiology , Arginine/metabolism , Cell Line , Eukaryotic Cells/metabolism , Gene Expression , Helicobacter pylori/growth & development , Helicobacter pylori/immunology , Helicobacter pylori/physiology , Interferon-gamma/pharmacology , Macrophage Activation , Macrophages/cytology , Macrophages/drug effects , Macrophages/metabolism , Mice , Mice, Knockout , Nitric Oxide Synthase/genetics , Nitric Oxide Synthase Type II , Nitrogen Dioxide/metabolism , RNA, Messenger
3.
Arch Biochem Biophys ; 392(2): 180-91, 2001 Aug 15.
Article in English | MEDLINE | ID: mdl-11488591

ABSTRACT

Susceptibility of Helicobacter pylori to the antibiotic metronidazole has been attributed to the activity of an oxygen-insensitive NADPH-dependent nitroreductase (RdxA), with resistance to this antimicrobial arising from null mutations in rdxA. To obtain a better understanding of the factors involved in resistance, nitroreductase and metronidazole reduction activities were investigated in matched pairs of clinical and laboratory-derived sensitive and resistant H. pylori strains. Significant differences in enzyme activities were observed between sensitive and resistant strains, suggesting that metronidazole susceptibility in H. pylori was associated with more than one enzyme activity. To establish the mutations occurring in rdxA, the genes from seventeen bacterial strains, including matched pairs were sequenced. To assess whether metronidazole was responsible for inducing random mutations in this gene, the complete nucleotide sequence of gene hp0630, encoding an NAD(P)H-quinone reductase which also has NADPH-dependent nitroreductase activity, was determined in the same strains. All resistant strains showed nonsense, missense, or frameshift mutations randomly throughout rdxA. In contrast, no mutations were observed in hp0630. The results confirmed the presence of rdxA null mutations in resistant strains and suggested that other factors involved in the metabolism of metronidazole contributed to the resistant phenotype.


Subject(s)
Drug Resistance, Neoplasm , Escherichia coli Proteins , Helicobacter pylori/enzymology , Metronidazole/pharmacology , Nitroreductases/metabolism , Amino Acid Sequence , Antitrichomonal Agents/pharmacology , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Cytosol/enzymology , Drug Resistance/genetics , Escherichia coli/enzymology , Membrane Proteins/metabolism , Molecular Sequence Data , Mutation , NAD(P)H Dehydrogenase (Quinone)/genetics , NADP/metabolism , Phenotype , Polymerase Chain Reaction , Sequence Homology, Amino Acid
4.
Redox Rep ; 6(3): 179-81, 2001.
Article in English | MEDLINE | ID: mdl-11523593

ABSTRACT

Metronidazole and glutathione reduction activities were measured in situ in the micro-aerophilic bacteria Campylobacter coli and Helicobacter pylori employing 14N- and 1H-nuclear magnetic resonance spectroscopy. The properties of these enzyme activities were investigated in matched pairs of strains with sensitive and resistant phenotypes to the antimicrobial metronidazole. The results indicated that the ability of each type of strain to reduce metronidazole corresponded to its sensitive or resistance phenotype. Higher levels of glutathione reduction and a significantly lower Ki for metronidazole were observed in sensitive strains compared to resistant strains. These findings suggested a relationship between the cellular machinery regulating intracellular redox status in C. coli and H. pylori, and the effects of metronidazole on these bacteria, which supported the 'scavenging of oxygen' hypothesis.


Subject(s)
Campylobacter coli/drug effects , Drug Resistance/physiology , Glutathione/metabolism , Helicobacter pylori/drug effects , Metronidazole/pharmacology , Oxygen/metabolism , Campylobacter coli/metabolism , Helicobacter pylori/metabolism , Metronidazole/metabolism , Models, Biological , Nuclear Magnetic Resonance, Biomolecular , Oxidation-Reduction
5.
Int J Syst Evol Microbiol ; 51(Pt 3): 819-826, 2001 May.
Article in English | MEDLINE | ID: mdl-11411703

ABSTRACT

Genotypic and phenotypic methods were applied to investigate differences between the closely related species Campylobacter hyoilei and Campylobacter coli. A unique DNA sequence from C. hyoilei was used to design a specific PCR assay that amplified a DNA product of 383 bp for all C. hyoilei strains, but not other Campylobacter species, including C. coli. The PCR assay could detect 100 fg pure C. hyoilei DNA, 2 x 10(2) c.f.u. ml(-1) using cultured cells and 8.3 x 10(3) c.f.u. 0.1 g(-1) in faeces. The C. hyoilei sequence utilized for specific detection and identification of this species showed similarities to sequences from bacteriophages Mu, P2 and 186, suggesting lysogination of the ancestral C. hyoilei genome. Activities of a set of 15 enzymes that participate in a variety of cellular functions, including biosynthesis, catabolism, energy generation, maintenance of redox balance and phosphate utilization, were tested using sets of strains of C. hyoilei and C. coli. Comparison of mean rates of enzyme activities revealed significant differences between species in the values determined for seven of these activities. Both the genetic and phenotypic data indicate that C. hyoilei is a unique Campylobacter species.


Subject(s)
Campylobacter coli/classification , Campylobacter coli/genetics , Campylobacter/classification , Campylobacter/genetics , DNA, Bacterial/genetics , Bacteriophage P2/genetics , Bacteriophage mu/genetics , Bacteriophages/genetics , Campylobacter jejuni/classification , Campylobacter jejuni/genetics , DNA, Bacterial/chemistry , Enzymes/genetics , Genotype , Molecular Sequence Data , Open Reading Frames , Phenotype , Polymerase Chain Reaction/methods , Restriction Mapping , Sensitivity and Specificity
6.
Int J Biochem Cell Biol ; 33(2): 143-53, 2001 Feb.
Article in English | MEDLINE | ID: mdl-11240371

ABSTRACT

Helicobacter pylori is a contributing factor to the development of gastric and duodenal ulcers and some gastric cancers. Some therapeutic regimes comprise of a number of components, one of which is the antimicrobial metronidazole. A problem with these therapies is the increasing prevalence of metronidazole-resistant (MtrR) H. pylori strains. Several resistance mechanisms have been proposed, and this study addresses the 'scavenging of oxygen' hypothesis. Spectrophotometric assays of cytosolic fractions indicated that metronidazole-sensitive (MtrS) H. pylori isolates had 2.6-fold greater nicotinamide adenine dinucleotide (NADH) oxidase activity, 34-fold greater NADH nitroreductase activity, and eightfold greater nicotinamide adenine dinucleotide phosphate (NADPH) nitroreductase activity than cytosolic fractions from matched MtrR strains. Electrophoresis of cytosolic fractions in non-denaturing gels showed up to 10 protein bands when stained with Coomassie blue. Activity staining of non-denaturing, non-reducing polyacrylamide gels detected NAD(P)H oxidase, disulphide reductase, tetrazolium reductase and nitroreductase activities in the protein bands. Oxidase and reductase activities observed in a band from MtrS strains were absent in the corresponding band from MtrR strains. This band comprised at least 13 proteins, and the major constituent was identified as an alkyl hydroperoxide reductase AhpC subunit. The absence of oxidase and reductase activities in the band from MtrR strains indicated a correlation between the activity of the proteins in this band and the metronidazole-sensitive phenotype.


Subject(s)
Drug Resistance, Microbial , Helicobacter pylori/drug effects , Metronidazole/pharmacology , NADH, NADPH Oxidoreductases/physiology , NAD/metabolism , Amino Acid Sequence , Cytosol/enzymology , Electrophoresis, Polyacrylamide Gel , Humans , NADPH Oxidases , Peroxidases/metabolism , Peroxiredoxins , Sequence Alignment
7.
Arch Microbiol ; 174(1-2): 1-10, 2000.
Article in English | MEDLINE | ID: mdl-10985736

ABSTRACT

The respiratory chain enzymes of microaerophilic bacteria should play a major role in their adaptation to growth at low oxygen tensions. The genes encoding the putative NADH:quinone reductases (NDH-1), the ubiquinol:cytochrome c oxidoreductases (bc1 complex) and the terminal oxidases of the microaerophiles Campylobacter jejuni and Helicobacter pylori were analysed to identify structural elements that may be required for their unique energy metabolism. The gene clusters encoding NDH-1 in both C. jejuni and H. pylori lacked nuoE and nuoF, and in their place were genes encoding two unknown proteins. The NuoG subunit in these microaerophilic bacteria appeared to have an additional Fe-S cluster that is not present in NDH-1 from other organisms; but C. jejuni and H. pylori differed from each other in a cysteine-rich segment in this subunit, which is present in some but not all NDH-1. Both organisms lacked genes orthologous to those encoding NDH-2. The subunits of the bc1 complex of both bacteria were similar, and the Rieske Fe-S and cytochrome b subunits had significant similarity to those of Paracoccus denitrificans and Rhodobacter capsulatus, well-studied bacterial bc1 complexes. The composition of the terminal oxidases of C. jejuni and H. pylori was different; both bacteria had cytochrome cbb3 oxidases, but C. jejuni also contained a bd-type quinol oxidase. The primary structures of the major subunits of the cbb3-type (terminal) oxidase of C. jejuni and H. pylori indicated that they form a separate group within the cbb3 protein family. The implications of the results for the function of the enzymes and their adaptation to microaerophilic growth are discussed.


Subject(s)
Campylobacter jejuni/metabolism , Helicobacter pylori/metabolism , Aerobiosis , Amino Acid Sequence , Campylobacter jejuni/genetics , Campylobacter jejuni/growth & development , Electron Transport/genetics , Electron Transport Complex III/genetics , Electron Transport Complex III/metabolism , Electron Transport Complex IV/genetics , Electron Transport Complex IV/metabolism , Genes, Bacterial , Helicobacter pylori/genetics , Helicobacter pylori/growth & development , Molecular Sequence Data , Multigene Family , Quinone Reductases/genetics , Quinone Reductases/metabolism , Sequence Homology, Amino Acid
8.
Arch Biochem Biophys ; 380(1): 78-84, 2000 Aug 01.
Article in English | MEDLINE | ID: mdl-10900135

ABSTRACT

The production of defined isogenic Helicobacter pylori pyrB mutants was undertaken to investigate the role of aspartate carbamoyltransferase (encoded by pyrB) in the survival of the bacterium. The complete structural gene for aspartate carbamoyltransferase from H. pylori strain RU1 was cloned into Escherichia coli by complementation of a pyrB auxotrophic mutant to facilitate the construction of a pyrB-disrupted copy in E. coli. The H. pylori pyrB gene had high similarity to other bacterial pyrB genes, and the phylogenetic clustering with different species was consistent with functional characteristics of the ACTase. The transcription initiation site for H. pylori pyrB-mRNA was mapped 25 bp upstream of the ATG start codon, and potential promoter regions were identified. In order to construct an isogenic pyrB H. pylori mutant by natural transformation and allelic exchange, the plasmid insert containing pyrB was disrupted by insertional mutagenesis of a chloramphenicol transferase gene cassette. In multiple transformations of H. pylori cells, no chloramphenicol-resistant pyrB mutants were isolated. Successful mutagenesis of other H. pylori genes and PCR amplification of the recombined gene demonstrated that the ACTase-negative mutants had been constructed by allelic exchange involving simultaneous replacement of the pyrB gene with the chloramphenicol-pyrB-disrupted copy. These findings suggested that the ACTase enzyme is essential for the survival of H. pylori.


Subject(s)
Aspartate Carbamoyltransferase/genetics , Aspartate Carbamoyltransferase/physiology , Helicobacter pylori/enzymology , Alleles , Base Sequence , Chloramphenicol O-Acetyltransferase/metabolism , Cloning, Molecular , Escherichia coli/metabolism , Genetic Complementation Test , Helicobacter pylori/growth & development , Models, Genetic , Molecular Sequence Data , Mutagenesis , Phylogeny , Plasmids/metabolism , Promoter Regions, Genetic , RNA, Messenger/metabolism , Sequence Analysis, DNA , Transformation, Genetic
9.
J Bacteriol ; 181(23): 7314-22, 1999 Dec.
Article in English | MEDLINE | ID: mdl-10572136

ABSTRACT

Arginase of the Helicobacter pylori urea cycle hydrolyzes L-arginine to L-ornithine and urea. H. pylori urease hydrolyzes urea to carbon dioxide and ammonium, which neutralizes acid. Both enzymes are involved in H. pylori nitrogen metabolism. The roles of arginase in the physiology of H. pylori were investigated in vitro and in vivo, since arginase in H. pylori is metabolically upstream of urease and urease is known to be required for colonization of animal models by the bacterium. The H. pylori gene hp1399, which is orthologous to the Bacillus subtilis rocF gene encoding arginase, was cloned, and isogenic allelic exchange mutants of three H. pylori strains were made by using two different constructs: 236-2 and rocF::aphA3. In contrast to wild-type (WT) strains, all rocF mutants were devoid of arginase activity and had diminished serine dehydratase activity, an enzyme activity which generates ammonium. Compared with WT strain 26695 of H. pylori, the rocF::aphA3 mutant was approximately 1, 000-fold more sensitive to acid exposure. The acid sensitivity of the rocF::aphA3 mutant was not reversed by the addition of L-arginine, in contrast to the WT, and yielded a approximately 10, 000-fold difference in viability. Urease activity was similar in both strains and both survived acid exposure equally well when exogenous urea was added, indicating that rocF is not required for urease activity in vitro. Finally, H. pylori mouse-adapted strain SS1 and the 236-2 rocF isogenic mutant colonized mice equally well: 8 of 9 versus 9 of 11 mice, respectively. However, the rocF::aphA3 mutant of strain SS1 had moderately reduced colonization (4 of 10 mice). The geometric mean levels of H. pylori recovered from these mice (in log(10) CFU) were 6.1, 5.5, and 4.1, respectively. Thus, H. pylori rocF is required for arginase activity and is crucial for acid protection in vitro but is not essential for in vivo colonization of mice or for urease activity.


Subject(s)
Arginase/metabolism , Bacterial Proteins , Helicobacter pylori/enzymology , Mice/microbiology , Agmatine/metabolism , Alleles , Animals , Arginase/genetics , Arginine/metabolism , Blotting, Southern , Cloning, Molecular , Deamination , Gene Silencing , Helicobacter pylori/genetics , Helicobacter pylori/pathogenicity , Hydrogen-Ion Concentration , Magnetic Resonance Spectroscopy , Mutagenesis , Urea/pharmacology , Urease/metabolism
10.
Int J Biochem Cell Biol ; 31(9): 961-75, 1999 Sep.
Article in English | MEDLINE | ID: mdl-10533287

ABSTRACT

(1) The role of fumarate metabolism in the microaerophily of the Campylobacter genus and the effects of therapeutic agents against it were investigated. (2) NMR spectroscopy was employed to determine the properties of Campylobacter fumarase (Fum) and fumarate reductase (Frd). Radiotracer analysis was used to determine the production of carbon dioxide by Campylobacter cells. Standard microbiological techniques were used to measure the effects of environmental conditions and inhibitors on bacterial growth. (3) All Campylobacter species tested showed both Fum and Frd activities. Frd activity was observed with or without the addition of an exogenous electron donor in the particulate fractions obtained from lysates. Fumarate was oxidized to carbon dioxide via the acetyl-CoA cleavage pathway. The genes encoding proteins involved in fumarate metabolism were identified in the Campylobacter jejuni genome. Cells grew better in atmospheres with 5 and 10% oxygen levels. Fum activity was the same in cultures grown under different oxygen tensions and did not vary with the age of cultures. Frd activity was higher in cultures which grew at faster rates and decreased with the age of cultures. Four Frd inhibitors showed bactericidal effects against Campylobacter spp. with different potencies. The relative strengths of inhibition of the compounds followed the same order as the bactericidal effects. (4) The results suggested that Frd and Fum are constitutive and play a fundamental role in these microaerophiles which show characteristics of anaerobic metabolism, and that the Frd inhibitors tested would not be of therapeutic use.


Subject(s)
Anthelmintics/pharmacology , Campylobacter/metabolism , Fumarates/metabolism , Animals , Campylobacter/drug effects , Campylobacter/growth & development , Hydrogen-Ion Concentration , Levamisole/pharmacology , Malates/metabolism , Morantel/pharmacology , Pyrantel/analogs & derivatives , Pyrantel/pharmacology , Thiabendazole/pharmacology
11.
Microbiol Mol Biol Rev ; 63(3): 642-74, 1999 Sep.
Article in English | MEDLINE | ID: mdl-10477311

ABSTRACT

The publication of the complete sequence of Helicobacter pylori 26695 in 1997 and more recently that of strain J99 has provided new insight into the biology of this organism. In this review, we attempt to analyze and interpret the information provided by sequence annotations and to compare these data with those provided by experimental analyses. After a brief description of the general features of the genomes of the two sequenced strains, the principal metabolic pathways are analyzed. In particular, the enzymes encoded by H. pylori involved in fermentative and oxidative metabolism, lipopolysaccharide biosynthesis, nucleotide biosynthesis, aerobic and anaerobic respiration, and iron and nitrogen assimilation are described, and the areas of controversy between the experimental data and those provided by the sequence annotation are discussed. The role of urease, particularly in pH homeostasis, and other specialized mechanisms developed by the bacterium to maintain its internal pH are also considered. The replicational, transcriptional, and translational apparatuses are reviewed, as is the regulatory network. The numerous findings on the metabolism of the bacteria and the paucity of gene expression regulation systems are indicative of the high level of adaptation to the human gastric environment. Arguments in favor of the diversity of H. pylori and molecular data reflecting possible mechanisms involved in this diversity are presented. Finally, we compare the numerous experimental data on the colonization factors and those provided from the genome sequence annotation, in particular for genes involved in motility and adherence of the bacterium to the gastric tissue.


Subject(s)
Gene Expression Regulation, Bacterial , Genome, Bacterial , Helicobacter pylori/genetics , Helicobacter pylori/metabolism , Helicobacter Infections/microbiology , Humans
12.
Biometals ; 12(1): 35-45, 1999 Mar.
Article in English | MEDLINE | ID: mdl-10420572

ABSTRACT

The effects of vanadium ions on the activities of enzymes of aerobic and anaerobic respiratory chains were investigated in vitro and in situ employing 1H-, 14N-, 31P- and 51V- nuclear magnetic resonance spectroscopy, electron paramagnetic resonance spectroscopy and spectrophotometry. Vanadate and vanadyl ions produced either non-specific redox or specific activation or inhibition of respiratory enzymes. The oxidants molybdate and chromate and the reductant dithiothreitol were used to distinguish between non-specific and specific effects of vanadium ions on enzyme activities. The results suggested that components of anaerobic respiratory chains were more susceptible to vanadium ions than those of the aerobic respiratory chain.


Subject(s)
Electron Transport/drug effects , Vanadium/pharmacology , Animals , Bacteria/drug effects , Dithiothreitol/pharmacology , Hydroxybutyrate Dehydrogenase/metabolism , Magnetic Resonance Spectroscopy , NADH Dehydrogenase/metabolism , NADP Transhydrogenases/metabolism , Nitrate Reductase , Nitrate Reductases/metabolism , Oxidation-Reduction , Succinate Dehydrogenase/metabolism , Swine
13.
Eur J Biochem ; 260(1): 258-67, 1999 Feb.
Article in English | MEDLINE | ID: mdl-10091606

ABSTRACT

The composition and properties of the tricarboxylic acid cycle of the microaerophilic human pathogen Helicobacter pylori were investigated in situ and in cell extracts using [1H]- and [13C]-NMR spectroscopy and spectrophotometry. NMR spectroscopy assays enabled highly specific measurements of some enzyme activities, previously not possible using spectrophotometry, in in situ studies with H. pylori, thus providing the first accurate picture of the complete tricarboxylic acid cycle of the bacterium. The presence, cellular location and kinetic parameters of citrate synthase, aconitase, isocitrate dehydrogenase, alpha-ketoglutarate oxidase, fumarate reductase, fumarase, malate dehydrogenase, and malate synthase activities in H. pylori are described. The absence of other enzyme activities of the cycle, including alpha-ketoglutarate dehydrogenase, succinyl-CoA synthetase, and succinate dehydrogenase also are shown. The H. pylori tricarboxylic acid cycle appears to be a noncyclic, branched pathway, characteristic of anaerobic metabolism, directed towards the production of succinate in the reductive dicarboxylic acid branch and alpha-ketoglutarate in the oxidative tricarboxylic acid branch. Both branches were metabolically linked by the presence of alpha-ketoglutarate oxidase activity. Under the growth conditions employed, H. pylori did not possess an operational glyoxylate bypass, owing to the absence of isocitrate lyase activity; nor a gamma-aminobutyrate shunt, owing to the absence of both gamma-aminobutyrate transaminase and succinic semialdehyde dehydrogenase activities. The catalytic and regulatory properties of the H. pylori tricarboxylic acid cycle enzymes are discussed by comparing their amino acid sequences with those of other, more extensively studied enzymes.


Subject(s)
Citric Acid Cycle/physiology , Helicobacter pylori/enzymology , Allosteric Regulation , Coenzyme A/metabolism , Genome, Bacterial , Glyoxylates/metabolism , Kinetics , Magnetic Resonance Spectroscopy , Succinic Acid/metabolism
14.
Biochim Biophys Acta ; 1388(2): 465-77, 1998 Nov 10.
Article in English | MEDLINE | ID: mdl-9858781

ABSTRACT

The properties of Helicobacter pylori arginase activity in metabolically competent cells and lysates were investigated with the aim of obtaining a better understanding of the nitrogen metabolism of the bacterium. One-dimensional 1H- and 13C-nuclear magnetic resonance spectroscopy, spectrophotometry, radio tracer analysis and protein purification techniques were employed to characterize in situ the first step in the utilization of l-arginine by the bacterium. Arginase activity was associated with the cell-envelope fraction obtained by centrifugation of lysates. A Km of 22+/-3 mM was determined for the enzyme activity, and differences of Vmax were observed between strains. Divalent cations stimulated arginase activity, and the most potent activators were Co2+>Ni2+>Mn2+. The activity was highly specific for l-arginine and did not catabolize analogs recognized by other arginases of prokaryote and eukaryote origin. The Ki of several inhibitors was measured and served also to characterize the enzyme activity. The presence of bicarbonate enhanced the hydrolysis of l-arginine in cell suspensions, but not in lysates or semi-purified enzyme preparations. Amino acid sequence analyses revealed important differences between the deduced structures of H. pylori arginase and those of other organisms. This finding was consistent with experimental data which showed that H. pylori arginase has unique properties.


Subject(s)
Arginase/chemistry , Helicobacter pylori/enzymology , Arginine/metabolism , Bacterial Proteins/chemistry , Biological Transport , Cations, Divalent/pharmacology , Enzyme Inhibitors/pharmacology , Isoelectric Point , Kinetics , Magnetic Resonance Spectroscopy , Molecular Weight , Ornithine/pharmacology , Sequence Homology, Amino Acid , Substrate Specificity
15.
J Bacteriol ; 180(21): 5574-9, 1998 Nov.
Article in English | MEDLINE | ID: mdl-9791105

ABSTRACT

The mechanism of resistance to N-phosphonoacetyl-L-aspartate (PALA), a potent inhibitor of aspartate carbamoyltransferase (which catalyzes the first committed step of de novo pyrimidine biosynthesis), in Helicobacter pylori was investigated. At a 1 mM concentration, PALA had no effects on the growth and viability of H. pylori. The inhibitor was taken up by H. pylori cells and the transport was saturable, with a Km of 14.8 mM and a Vmax of 19.1 nmol min-1 microliters of cell water-1. By 31P nuclear magnetic resonance (NMR) spectroscopy, both PALA and phosphonoacetate were shown to have been metabolized in all isolates of H. pylori studied. A main metabolic end product was identified as inorganic phosphate, suggesting the presence of an enzyme activity which cleaved the carbon-phosphorus (C-P) bonds. The kinetics of phosphonate group cleavage was saturable, and there was no evidence for substrate inhibition at higher concentrations of either compound. C-P bond cleavage activity was temperature dependent, and the activity was lost in the presence of the metal chelator EDTA. Other cleavages of PALA were observed by 1H NMR spectroscopy, with succinate and malate released as main products. These metabolic products were also formed when N-acetyl-L-aspartate was incubated with H. pylori lysates, suggesting the action of an aspartase. Studies of the cellular location of these enzymes revealed that the C-P bond cleavage activity was localized in the soluble fraction and that the aspartase activity appeared in the membrane-associated fraction. The results suggested that the two H. pylori enzymes transformed the inhibitor into noncytotoxic products, thus providing the bacterium with a mechanism of resistance to PALA toxicity which appears to be unique.


Subject(s)
Antimetabolites/pharmacology , Aspartic Acid/analogs & derivatives , Growth Inhibitors/pharmacology , Helicobacter pylori/metabolism , Phosphonoacetic Acid/analogs & derivatives , Antimetabolites/metabolism , Aspartic Acid/metabolism , Aspartic Acid/pharmacology , Biological Transport , Drug Resistance, Microbial , Growth Inhibitors/metabolism , Helicobacter pylori/drug effects , Helicobacter pylori/growth & development , Kinetics , Metals , Phosphonoacetic Acid/metabolism , Phosphonoacetic Acid/pharmacology , Temperature , Tritium
16.
Arch Microbiol ; 170(4): 279-84, 1998 Oct.
Article in English | MEDLINE | ID: mdl-9732442

ABSTRACT

Metronidazole is active against most anaerobic organisms and is also used in the treatment of the microaerophilic bacterium Helicobacter pylori. Resistance to metronidazole is uncommon in most anaerobic organisms, but it is increasingly prevalent in H. pylori. Previously we have suggested that metronidazole resistance in H. pylori is inherent in the microaerophilic nature of the organism and therefore would be present in other microaerophiles such as Campylobacter. Short periods of anaerobiosis caused metronidazole-resistant (MtrR) strains of Campylobacter spp. to become sensitive to metronidazole. Under microaerophilic conditions, cultures of the MtrR mutant Campylobacter coli R1 at bacterial cell densities of greater than 10(8) cfu/ml lost viability, whereas no loss in viability was observed in cultures at cell densities of less than 10(8). The MtrS C. coli strain lost viability at all cell densities. Comparisons of NAD(P)H oxidase activity between MtrS and MtrR strains indicated that the MtrS C. coli strain contained fourfold higher NADH oxidase activity and twofold higher NADPH oxidase activity than did the MtrR Campylobacter strains. These results show that MtrR Campylobacter spp. display resistance characteristics similar to those of H. pylori, suggesting that the resistance mechanism is a phenomenon of the microaerophilic nature of these bacteria.


Subject(s)
Anti-Bacterial Agents/pharmacology , Campylobacter/drug effects , Metronidazole/pharmacology , Aerobiosis , Campylobacter/enzymology , Campylobacter/growth & development , Campylobacter/physiology , Colony Count, Microbial , Drug Resistance, Microbial , NADPH Oxidases/metabolism , Time Factors
17.
J Membr Biol ; 165(1): 65-76, 1998 Sep 01.
Article in English | MEDLINE | ID: mdl-9705983

ABSTRACT

The fumarate transport system of the bacterium Helicobacter pylori was investigated employing radioactive tracer analysis. The transport of fumarate at micromolar concentrations was saturable with a KM of 220 +/- 21 micron and Vmax of 54 +/- 2 nmole/min/mg protein at 20 degrees C, depended on temperature between 4 and 40 degrees C, and was susceptible to inhibitors, suggesting the presence of one or more fumarate carriers. The release of fumarate from cells was also saturable with a KM of 464 +/- 71 micron and Vmax of 22 +/- 2 nmol/min/mg protein at 20 degrees C. The rates of fumarate influx at millomolar concentrations increased linearly with permeant concentration, and depended on the age of the cells. The transport system was specific for dicarboxylic acids suggesting that fumarate is taken up via dicarboxylate transporters. Succinate and fumarate appeared to form an antiport system. The properties of fumarate transport were elucidated by investigating the effects of amino acids, monovalent cations, pH and potential inhibitors. The results provided evidence that influx and efflux of fumarate at low concentrations from H. pylori cells was a carrier-mediated secondary transport with the driving force supplied by the chemical gradient of the anion. The anaerobic C4-dicarboxylate transport protein identified in the genome of the bacterium appeared to be a good candidate for the fumarate transporter.


Subject(s)
Carrier Proteins/metabolism , Fumarates/metabolism , Helicobacter pylori/metabolism , Amino Acids/pharmacology , Biological Transport , Carboxylic Acids/pharmacology , Kinetics , Temperature , Thermodynamics
18.
J Antimicrob Chemother ; 41(1): 67-75, 1998 Jan.
Article in English | MEDLINE | ID: mdl-9511039

ABSTRACT

The effects of metronidazole on catalase-positive and spontaneous catalase-negative mutants of Helicobacter pylori were studied to investigate whether the action of metronidazole on this microaerophilic organism occurs by reactive oxygen species generated by futile cycling or by the reduction of metronidazole to its active form. Increased sensitivity would be expected to occur in catalase-negative mutants if the mode of action of metronidazole was mediated through reactive oxygen species that may result from futile cycling of metronidazole. Two strains, RU1 and N6, were found to mutate spontaneously to a catalase-negative phenotype. The catalase-positive strain RU1(KatA+) and its catalase-negative counterpart RU1(KatA-) were sensitive to metronidazole, with MICs of 0.5 mg/L. The metronidazole-sensitive strain RU1(KatA-) lost viability at a rate similar to the parent RU1(KatA+) strain in the presence of 10 mg/L of metronidazole. Stable resistance to metronidazole was induced in RU1(KatA+) and RU1(KatA-) by passaging these strains in the presence of metronidazole. The catalase-positive and catalase-negative strains, N6(KatA+) and N6(KatA-), were resistant to metronidazole, with MICs of 96 mg/L. These observations indicated that the presence or absence of catalase activity did not affect the susceptibility of strains to metronidazole. The metabolism of metronidazole by H. pylori was investigated by 14N-NMR spectroscopy. Metronidazole was reduced in sensitive, catalase-positive and catalase-negative strains. Metronidazole-resistant cells reduced the 5-nitroimidazole more slowly, suggesting that resistance is achieved through the prevention or inhibition of metronidazole reduction.


Subject(s)
Anti-Bacterial Agents/pharmacology , Helicobacter pylori/drug effects , Metronidazole/pharmacology , Anti-Bacterial Agents/metabolism , Catalase/drug effects , Catalase/metabolism , Drug Resistance, Microbial , Helicobacter pylori/enzymology , Helicobacter pylori/metabolism , Metronidazole/metabolism , Oxidation-Reduction , Phenotype
19.
Arch Biochem Biophys ; 347(1): 119-25, 1997 Nov 01.
Article in English | MEDLINE | ID: mdl-9344472

ABSTRACT

The kinetic and regulatory properties of aspartate carbamoyltransferase (ACTase) of the human pathogen Helicobacter pylori were studied in situ in cell-free extracts. The presence of enzyme activity was established by identifying the end product as carbamoylaspartate using nuclear magnetic resonance spectroscopy. Activity was measured in all strains studied, including recent clinical isolates. Substrate saturation curves determined employing radioactive tracer analysis or a microtiter colorimetric assay were hyperbolic for both carbamoyl phosphate and aspartate, and there was no evidence for substrate inhibition at higher concentrations of either substrate. The apparent Km were 0.6 and 11.6 mm for carbamoyl phosphate and aspartate, respectively. Optimal pH and temperature were determined as 8.0 and 45 degrees C. Activity was observed with the l- but not the d-isomer of aspartate. Succinate and maleate inhibited enzyme activity competitively with respect to aspartate. The carbamoyl phosphate analogues acetyl phosphate and phosphonoacetic acid inhibited activity in a competitive manner with respect to carbamoyl phosphate. With limiting carbamoyl phosphate purine and pyrimidine nucleotides, tripolyphosphate, pyrophosphate, and orthophosphate inhibited competitively at millimolar concentrations. Ribose and ribose 5-phosphate at 10 mm concentration showed 20 and 35% inhibition of enzyme activity, respectively. N-Phosphonoacetyl-l-aspartate (PALA) was the most potent inhibitor studied, with 50% inhibition of enzyme activity observed at 0.1 microM concentration. Inhibition by PALA was competitive with carbamoyl phosphate (Ki = 0.245 microM) and noncompetitive with aspartate. The kinetic and regulatory data on the activity of the H. pylori enzyme suggest it is a Class A ACTase, but with some interesting characteristics distinct from this class.


Subject(s)
Aspartate Carbamoyltransferase/metabolism , Helicobacter pylori/enzymology , Aspartate Carbamoyltransferase/antagonists & inhibitors , Aspartic Acid/analogs & derivatives , Aspartic Acid/pharmacology , Carbamyl Phosphate/analogs & derivatives , Carbamyl Phosphate/pharmacology , Cytidine Triphosphate/pharmacology , Enzyme Inhibitors/pharmacology , Helicobacter pylori/pathogenicity , Humans , Hydrogen-Ion Concentration , Kinetics , Magnetic Resonance Spectroscopy , Maleates/pharmacology , Organophosphates/pharmacology , Phosphonoacetic Acid/analogs & derivatives , Phosphonoacetic Acid/pharmacology , Ribose/analogs & derivatives , Ribose/pharmacology , Stereoisomerism , Substrate Specificity , Succinic Acid/pharmacology , Temperature
20.
Biochim Biophys Acta ; 1334(2-3): 291-302, 1997 Mar 15.
Article in English | MEDLINE | ID: mdl-9101725

ABSTRACT

The metabolism of pyruvate by Campylobacter spp. was investigated employing one- and two-dimensional 1H, 13C and 31P nuclear magnetic resonance spectroscopy. Metabolically competent cells incubated aerobically with pyruvate yielded acetate, acetolactate, alanine, formate, lactate, and succinate. The production of acetolactate, alanine and lactate indicated the presence of acetohydroxy acid synthase, alanine transaminase and lactate dehydrogenase activities, respectively. Accumulation of acetate and formate as metabolic products provided evidence for the existence of a mixed acid fermentation pathway in the microorganism. Formation of succinate suggested the incorporation of the pyruvate carbon skeleton to the Kreb's cycle, and the observation of pyruvate dehydrogenase activities in bacterial lysates supported this interpretation. Generation of pyruvate from L-serine in incubations with intact cells and lysates indicated the presence of serine dehydratase activity in the bacterium. Pyruvate was also formed in cell suspensions and lysates from phosphoenol pyruvate. The existence of anaplerotic sequences involving phosphoenol pyruvate carboxykinase and a malic enzyme were established in bacterial lysates. The activities of enzymes involved in the biosynthesis of isoleucine and valine were measured. Addition of pyruvate to different solid culture media inhibited bacterial growth, and the inhibition was attributed to the accumulation of acetate and formate. The variety of products formed using pyruvate as the sole substrate and the existence of anaplerotic sequences and anabolic pathways which employ pyruvate, showed the important role of this metabolite in the energy and biosynthesis metabolism of Campylobacter spp.


Subject(s)
Campylobacter/enzymology , Pyruvates/metabolism , Campylobacter/growth & development , Magnetic Resonance Spectroscopy/methods
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