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1.
Mitochondrial DNA B Resour ; 9(1): 128-132, 2024.
Article in English | MEDLINE | ID: mdl-38259357

ABSTRACT

The mitogenome of Bauhinia variegate was assembled and characterized in this study. The mitogenome size was 437,271 bp, and its GC content was 45.5%. 36 protein-coding genes, 17 tRNAs and 3 rRNAs were annotated in the mitogenome. A total of 12 MTPTs, ranging from 71 bp to 3562 bp, were identified in the mitogenome and covered 1.46% (6373 bp) of the mitogenome. Phylogenetic analysis of 15 species of Leguminosae based on 23 core protein-coding genes showed that B. variegata was sister to Tylosema esculentum, another member from the subfamily Cercidoideae. The mitogenome of B. variegata provides a valuable genetic resource for further phylogenetic studies of this family.

2.
DNA Res ; 29(2)2022 Feb 27.
Article in English | MEDLINE | ID: mdl-35438173

ABSTRACT

Cercidoideae, one of the six subfamilies of Leguminosae, contains one genus Cercis with its chromosome number 2n = 14 and all other genera with 2n = 28. An allotetraploid origin hypothesis for the common ancestor of non-Cercis genera in this subfamily has been proposed; however, no chromosome-level genomes from Cercidoideae have been available to test this hypothesis. Here, we conducted a chromosome-level genome assembly of Bauhinia variegata to test this hypothesis. The assembled genome is 326.4 Mb with the scaffold N50 of 22.1 Mb and contains 37,996 protein-coding genes. The Ks distribution between gene pairs in the syntenic regions indicates two whole-genome duplications (WGDs): one is B. variegata-specific, and the other is shared among core eudicots. Although Ks between gene pairs generated by the recent WGD in Bauhinia is greater than that between Bauhinia and Cercis, the WGD was not detected in Cercis, which can be explained by an accelerated evolutionary rate in Bauhinia after divergence from Cercis. Ks distribution and phylogenetic analysis for gene pairs generated by the recent WGD in Bauhinia and their corresponding orthologs in Cercis support the allopolyploidy origin hypothesis of Bauhinia. The genome of B. variegata also provides a genomic resource for dissecting genetic basis of its ornamental traits.


Subject(s)
Bauhinia , Fabaceae , Bauhinia/genetics , Biological Evolution , Chromosomes , Fabaceae/genetics , Phylogeny
3.
Sci Rep ; 9(1): 10025, 2019 07 11.
Article in English | MEDLINE | ID: mdl-31296890

ABSTRACT

A potted experiment with Populus × euramericana 'Neva' was carried out to assess whether there are positive effects of magnetic treatment of saline water (MTSW) on nitrogen metabolism under controlled conditions in a greenhouse. Growth properties, nitrogen contents, enzyme activities and metabolite concentrations were determined based on field experiments and laboratory analysis after a 30-day treatment. The results were as follows: (1) Biomass accumulation, root morphological properties and total nitrogen content were improved by MTSW. (2) Magnetization led to a greater increase in nitrate-nitrogen (NO3--N) content in roots than in leaves, accompanied by greater NO3- efflux and activated nitrate reductase. (3) MTSW led to a higher ammonium-nitrogen (NH4+-N) content and greater uptake of net NH4+ in the leaves than that in the roots. (4) Magnetization stimulated glutamine synthase, glutamate dehydrogenase and glutamate synthase activities, whereas the concentrations of glutathione and oxidized glutathione were increased in leaves but decreased in roots, and the total glutathione content was increased. Overall, these results indicated some beneficial impacts of MTSW on nitrogen translocation under field conditions, especially for equilibrating the distribution of NO3--N and NH4+-N. Moreover, these findings confirmed the potential of using low-quality water for agriculture.


Subject(s)
Agriculture/methods , Ammonium Compounds/metabolism , Nitrogen/metabolism , Populus/metabolism , Saline Solution/pharmacology , Seedlings/growth & development , Biomass , Glutamate Dehydrogenase/metabolism , Glutamate Synthase/metabolism , Glutathione/metabolism , Magnetic Fields/adverse effects , Nitrate Reductase/metabolism , Nitrates/metabolism , Plant Leaves/metabolism , Plant Roots/metabolism , Seedlings/metabolism , Sodium Chloride/toxicity , Stress, Physiological
4.
Bioorg Med Chem Lett ; 25(21): 4866-4871, 2015 Nov 01.
Article in English | MEDLINE | ID: mdl-26112439

ABSTRACT

Many efforts are underway to develop selective inhibitors of the voltage-gated sodium channel NaV1.7 as new analgesics. Thus far, however, in vitro selectivity has proved difficult for small molecules, and peptides generally lack appropriate pharmacokinetic properties. We previously identified the NaV1.7 inhibitory peptide GpTx-1 from tarantula venom and optimized its potency and selectivity via structure-guided analoging. To further understand GpTx-1 binding to NaV1.7, we have mapped the binding site to transmembrane segments 1-4 of the second pseudosubunit internal repeat (commonly referred to as Site 4) using NaV1.5/NaV1.7 chimeric protein constructs. We also report that select GpTx-1 amino acid residues apparently not contacting NaV1.7 can be derivatized with a hydrophilic polymer without adversely affecting peptide potency. Homodimerization of GpTx-1 with a bifunctional polyethylene glycol (PEG) linker resulted in a compound with increased potency and a significantly reduced off-rate, demonstrating the ability to modulate the function and properties of GpTx-1 by linking to additional molecules.


Subject(s)
NAV1.7 Voltage-Gated Sodium Channel/metabolism , Peptides/chemistry , Peptides/pharmacology , Protein Engineering , Voltage-Gated Sodium Channel Blockers/pharmacology , Dimerization , Dose-Response Relationship, Drug , Humans , Molecular Conformation , Protein Binding , Protein Structure, Tertiary , Structure-Activity Relationship , Voltage-Gated Sodium Channel Blockers/chemistry
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