Small but not isolated: a population genetic survey of the tropical tree Cariniana estrellensis (Lecythidaceae) in a highly fragmented habitat.

Here, we explore the mating pattern and genetic structure of a tropical tree species, Cariniana estrellensis, in a small population in which progeny arrays (n=399), all adults (n=28) and all seedlings (n=39) were genotyped at nine highly informative microsatellite loci. From progeny arrays we were able to identify the source tree for at least 78% of pollination events. The gene immigration rates, mainly attributable to pollen, were high, varying from 23.5 to 53%. Although gene dispersal over long distance was observed, the effective gene dispersal distances within the small population were relatively short, with mean pollination distances varying from 69.9 to 146.9 m, and seed dispersal distances occurring up to a mean of 119.6 m. Mating system analyses showed that C. estrellensis is an allogamous species (tm=0.999), with both biparental inbreeding (tm-ts=-0.016) and selfing rates (s=0.001) that are not significantly different from zero. Even though the population is small, the presence of private alleles in both seedlings and progeny arrays and the elevated rates of gene immigration indicate that the C. estrellensis population is not genetically isolated. However, genetic diversity expressed by allelic richness was significantly lower in postfragmentation life stages. Although there was a loss of genetic diversity, indicating susceptibility of C. estrellensis to habitat fragmentation, no evidence of inbreeding or spatial genetic structure was observed across generations. Overall, C. estrellensis showed some resilience to negative genetic effects of habitat fragmentation, but conservation strategies are needed to preserve the remaining genetic diversity of this population.

Genetic diversity and mating system of Copaifera langsdorffii (Leguminosae/Caesalpinioideae).

Copaifera langsdorffii, locally known as copaíba, is a valuable tropical tree with medicinal properties of its oil. We studied the genetic variation, genetic structure, and the mating system of trees in stands of C. langsdorffii (Leguminosae/Caesalpinioideae) located in an extensive area between the Pardo and Mogi-Guaçu basins in São Paulo State, Brazil, and their offspring, conserved in an ex situ germplasm bank at the University of São Paulo in Ribeirão Preto, SP, Brazil, using six microsatellite loci. Leaves were collected from 80 seed trees and from 259 offspring and their DNA extracted. A total of 140 and 175 alleles were found in the seed trees and their offspring, respectively. Low genetic differentiation was observed between stands, indicating intense gene flow due to efficient pollen dispersion vectors. An estimation of the outcrossing rate showed that these stands are outcrossed (tm = 0.98, P > 0.05). The mean variance of the effective population size of each family in two of the stands was 3.69 and 3.43, while the total effective population size retained in the germplasm bank was between 81 and 96. The paternity correlation was low, ranging from 0.052 to 0.148, demonstrating that the families implanted in this germplasm bank are composed predominantly of half-sibs.

Genetic diversity of Metrodorea nigra (Rutaceae) from a small forest remnant in Brazil assessed with microsatellite markers.

Metrodorea nigra (Rutaceae) is an endemic Brazilian tree of great ecological importance, frequently found in the submontane regions of ombrophilous dense and semideciduous forests. This tree is useful for reforesting degraded areas and the wood can be employed in construction. We developed 12 microsatellite markers from a genomic library enriched for GA/CA repeats, for this species. Polymorphisms were assessed in 40 trees of a highly fragmented population found in Cravinhos, State of São Paulo, in southeastern Brazil. Among the 12 loci, 8 were polymorphic and only one had fixed alleles in this population. The number of alleles per locus and expected heterozygosity ranged from 2 to 11 and from 0.190 to 0.889, respectively. These results revealed moderate levels of genetic variation in M. nigra population when compared to other tropical species. Additionally, transferability of the 12 primers was tested in seven other Brazilian Rutaceae tree species (endemics: M. stipularis, Galipea jasminiflora, Esenbeckia leiocarpa and non-endemics: E. febrifuga, E. grandiflora, Balfourodendron riedelianum, Zanthoxylum riedelianum). Transferability ranged among species, but at least 8 loci (~67%) amplified in M. stipularis, demonstrating a high potential for transferring microsatellite markers between species of the same genus in the Rutaceae family.

Expression of class mu glutathione-S-transferase in human liver and its association with hepatopathies.

We studied the distribution of GSTM1 phenotypes in 611 individuals from an ethnically mixed sample of the Brazilian population who died from various causes. No influence of age, gender, or ethnicity was detected on the phenotypic distribution. In a sub-sample of 66 alcoholic individuals compared with 399 non-alcoholics there was almost a doubling of the odds ratio for GSTM1(0) individuals in the alcoholic category. The incidence of hepatopathies was higher in this group as well, and we observed a significant association of the null phenotype with cirrhosis. An excess of null phenotypes (374/611) was observed, and the allelic distribution was: GSTM1*A = 0.168, *B = 0.089, and *0 (null) = 0.743.

New protein genetic studies in six Amazonian Indian populations.

A total of 732 individuals affiliated with six Amazonian Indian populations were variously studied in relation to 26 protein genetic systems. Eleven of them were found to be monomorphic in these groups, in accordance with previous investigations. Similarities and dissimilarities (the latter involving the Rh, Duffy, haptoglobin and transferrin systems) were observed in relation to earlier investigations in four of these populations (Galibi, Palikour, Mundurucu and Tenharim). A dimeric, cathodal variant of albumin was found among two Galibi subjects, and the fairly common occurrence of CP* ACAY among some South American Indian populations was confirmed. The results in the six populations were compared with those from 29 others. When relationships are searched for among tribes of the same linguistic group, the factor that seems to be most influential is geographical localization, an exception being the pattern observed among the Cayapo subgroups. The latter shows genetic differences of the same level of magnitude as those observed among Ge-speaking tribes.

Protein genetic studies among the Tupi-Mondé Indians of the Brazilian Amazonia.

A sample of 417 individuals belonging to three Tupi-Mondé-speaking tribes (Gavião, Surui, Zoró) were variously studied in relation to 26 genetic protein systems. Previous investigations performed among the Surui in relation to some of these systems were confirmed. The three groups do not depart markedly from the genetic pattern already established for South American Indians and show low inter-ethnic admixture. When these results are combined with those from 10 other Tupi tribes, two clear geographic groupings (southeastern and northwestern) can be discerned. Using different methods to evaluate the same genetic distance matrices, different patterns of association between the Tupi-Mondé populations were obtained. The populations are probably too similar among themselves, blurring finer relationships. Am. J. Hum. Biol. 10:711-722, 1998. © 1998 Wiley-Liss, Inc.

The Brazilian Xavante Indians revisited: new protein genetic studies.

A total of 94 individuals from the Xavante village of Rio das Mortes were variously studied in relation to 28 protein genetic systems. No variation was observed for 15 of them, in accordance with previous studies. Of the remaining 13, four (Rh, Duffy, acid phosphatase, and GC) showed significant departures from the averages obtained in 32 other South American Indian populations. If studies performed in the 1960s are considered, there is indication that no significant changes in this village's gene pool has occurred in the last 30 years. Comparison with two other Xavante populations included nine systems with variation, and for three of them (MNSs, Rh, and Duffy) significant differences were found. Genetically the Rio das Mortes are closer to the São Marcos than to the Simões Lopes Xavantes. A dendrogram considering 25 genetic systems and 33 South American Indian populations was constructed. There the Xavante were grouped together, in two neighboring clusters, with three other tribes who speak Ge languages, But these clusters also present populations who speak other languages, and the reproducibility of the tree is low. South American Indians, at least with this set of markers, do not seem to be clearly classified into defined subgroups.

The Wai Wai Indians of South America: history and genetics.

Demographic medical and genetic information was obtained in a population of Carib-speaking Wai Wai Indians living in northern Brazil. At present mortality is low and fertility moderate, with a low variance in offspring number in completed families. Mobility is high, but about two-thirds of the unions are endogamic. Malaria is the main health problem. Phenotype and allele frequencies were obtained for 27 protein genetic systems. Comparison with six other Carib groups indicates closet affinities with another Amazonian tribe, the Arara. Quantification of the intra- and interpopulation genetic diversity in these seven populations indicate that the variation within groups is only slightly lower than the variation between groups. The level of Carib interpopulation diversity, on the other hand, does not differ significantly from that found in 11 Tupi-speaking populations. In accordance with their history of intermarriage with groups which speak slightly different languages, and consider themselves as distinct, the Wai Wai are clearly more diversified at the intrapopulation level than at least three of the six Carib populations with which they were compared.

Further blood genetic studies on Amazonian diversity--data from four Indian groups.

Information related to 31 protein genetic systems was obtained for 307 individuals affiliated with the Cinta Larga, Karitiana, Surui and Kararaô Indians of northern Brazil. In terms of genetic distances the Cinta Larga showed more similarities with the Karitiana (both are Tupi-speaking tribes), while at a more distant level the Surui clustered with the Kararaô. The latter, a Cayapo subgroup, showed a completely different genetic constitution from the other subgroups of this same tribe. Both the Kararaô and Karitiana are small, remnant populations, and their gene pools have presumably been severely affected by random and founder effects. These results were incorporated with those of 25 other Amazonian Indian tribes, and analysis by two multivariate techniques confirmed a previously observed geographical dichotomy, suggesting either that the Amazon river constitutes a barrier to north-south gene flow or that latitudinally different past migrations entered the region from the west.

Peptidase B polymorphism in cattle erythrocytes.

Starch gel electrophoresis and histochemical staining with L-leucylglycyl-glycine revealed genetic polymorphism in peptidase B in cattle erythrocytes. Genetic analysis of 164 full families indicated that the three phenotypes observed are the product of an autosomal locus with two codominant alleles, PepB1 and PepB2. A sample consisting of 2630 individuals representing 5 Zebu, 13 European, and 2 crossbred breeds was studied. This polymorphism was observed in all Zebu and crossbred breeds. The frequency of the PepB1 allele was 0.89, 0.83, 0.59, 0.82 and 0.62 in the Nellore, Gyr, Guzerat, Indubrazil, and Tabapuan breeds, respectively. The PepB2 allele appears to be fixed in the European breeds, except Marchigiana and Chianina.

Quantitative differences between human red cell esterases D phenotypes

A atividade enzimática da ESD eritrocitária foi determinada em 125 indivíduos de fenótipo ESD1, 69 de ESD2-1 de ESD2. A atividade média desses três grupos é 265,04; 230,35 e 161,66 unidades definidas como a quantidade capaz de hidrolisar 10-7 moles de acetato de 4-metil-umbeliferona/h/g Hb. A distribuiçäo da atividade enzimática na amostra sugere ser unimodal. A variabilidade entre os fenótipos é significativa. A atividade associada ao alelo ESD*1 é estimada ser 60% maior que a do alelo ESD*2. A diferença é responsável por 15% da variaçäo quantitativa total da ESD eritrocitária nessa amostra

Blood genetic systems in four Amazonian tribes.

Data on 31 genetic systems were obtained for 421 individuals belonging to the Arara, Araweté, Mundurucu, and Jamamadi tribes of northern Brazil. The Jamamadi depart farthest, and the Mundurucu least, from South American Indian averages. These data are analyzed together with those of 24 other Amazonian groups. Genetic distances and corresponding dendrograms indicate a cluster of 14 related tribes living north of the Amazon river. These genetic results show only a modest correlation with linguistic and geographic relationships among these groups.

Association between the acid phosphatase 1 and adenosine deaminase systems in a Brazilian sample.

Analyses of pairwise associations between several erythrocyte genetic systems were performed on a sample from a Brazilian trihybrid population. The present paper confirms the association between the ACP1 and ADA loci, the acid phosphatase 1 and adenosine deaminase systems. The results indicate that both selection and racial admixture may influence this association.

Reconstructing history: the Amazonian Mura Indians.

We studied demographic characteristics of two Mura Indian villages. Two-hundred six inhabitants of these villages and another population were tested in relation to 30 blood and 4 saliva genetic systems. These groups exhibit high mobility and exogamy rates and high fertility but relatively low mortality and variance in number of children per woman. Hb J Oxford and albumin Maku were observed, and they show high prevalences of GPT*1 and RH*R1 but low of HP*1 compared to other South American Indians. Four electrophoretic saliva systems are reported here for the first time in a predominantly Amerindian group. The amount of polymorphism was more limited than that found in Caucasian, black, and Oriental populations. The Mura are still predominantly Indian (82%) but have African (11%) and Caucasoid (7%) admixture. Using these values, the putative ancestral Mura gene frequencies were assessed. Problems related to quantitative estimations of admixture and the factors that influence the process are discussed.

POPULATION DIFFERENTIATION AND RACIAL ADMIXTURE IN THE AFRICANIZED HONEYBEE (APIS MELLIFERA L.).

To study the degree of interpopulational differentiation and racial admixture in Africanized honeybees, we collected worker bees from three regions of Brazil (the northeast, the state of Sao Paulo, and Porto Alegre) and from Uruguay and determined their genotypes for 10 enzyme loci. We also performed a morphometric analysis on forewing measurements of worker bees from the northeast and Porto Alegre regions of Brazil and from Paysandu, Uruguay. Comparative analysis of interpopulational heterogeneity snowed that there are significant differences, especially at the Mdh locus, among the populations from different regions. An increase in the frequency of the MdhB allele was observed from north to south, with predominance in the Uruguayan populations. A small component of interpopulational variability was detected in the populations studied. Racial admixture was calculated from information obtained for Mdh in Africa and Europe. The percentages of racial admixture differed slightly but significantly among Brazilian regions. The morphometric study based on canonical variables exhibited a similar pattern. The greater proportions of Apis mellifera adansonii alleles in the admixture may be explained by selection during the initial stage of migration of Africanized bees and by preferential mating between individuals of the same race. Differences in the proportions of A. m. adansonii alleles between regions indicate incipient populational differentiation of Africanized bees. We suggest that greater gene flow from the European races in the south of Brazil could be one of the causes of this phenomenon.

Genetic variation within the Tupi linguistic group: new data on three Amazonian tribes.

A total of 505 individuals belonging to four populations of three Brazilian Indian tribes were variously studied in relation to 34 genetic systems, and the results were compared with South American Indian averages and five other Tupi populations. Rare variants (CdE of the Rh system, PGM211-1, Cp A-CAY1, serum cholinesterase2 C5+ and some Gm combinations) were observed with varying prevalences, and the three tribes showed different degrees of departure (28%-40% of differences of 10% or more in gene frequencies) from South American Indian averages. People from two communities who speak the same language and are labelled as belonging to the same tribe (Asurini) showed a large degree of genetic differentiation. Another of the tribes studied (Urubu-Kaapor) link through genetic distance analyses with two other tribes from the north of the continent, forming a distinct microevolutionary unit. These features emphasize the peculiarities of the genetic variation in populations with a hunter-gatherer, rudimentary agriculture type of economy.

Genetic variation within a linguistic group: Apalai-Wayana and other Carib tribes.

A total of 136 individuals were studied in relation to 31 genetic systems, and the results were compared with South American Indian averages and previous surveys on the Wayana of French Guiana and Surinam. The information was afterwards integrated with data from other Carib groups, and two types of genetic distances (Nei's and Edwards') were calculated a) between five groups, considering ten systems; and b) between nine groups, using five systems. The two measures of genetic distances correlated well (Spearman's correlation coefficient around 0.70), and there was good agreement between the geographical and genetic distances. All analyses indicated a peripheral position for the Apalai-Wayana and their distinctiveness from the Wayana of French Guiana and Surinam, suggesting that intertribal fusions may play an important role in the genetic differentiation of these populations.

Gene flow across tribal barriers and its effect among the Amazonian Içana river Indians.

Demographic information was obtained from 622 individuals of five communities of primarily Baniwa Amerindians living near the Içana river in Brazil. Four of these populations, plus another from the same area, were also studied genetically. The latter investigation included the blood and, in some cases, saliva of 531 subjects, variously tested in relation to 40 genetic systems. Demographically these groups are characterized by young age, high intertribal admixture, low non-Indian admixture, high exogamy but low marital distance and high inbreeding, high fertility but low variance in offspring number, and relatively low mortality. Their gene pool shows a peptidase B variant (PEPB2BAN1) and "private" polymorphism of carbonic anhydrase2 (CA2BAN1) until now observed only among them. Other distinctive characteristics are the low frequencies of LNS (0.08), LNs (0.09), RZ (0.01), RO or r(0.02), ACPA (0.08), GALTD (0.01), and the relatively high prevalences of Gm (0.05) and Gc1 (0.82). TfDchi occurs with a low prevalence (0.01). Genetic distance analysis reveals that the one Baniwa sample by history comprised of minimally admixed individuals is quite similar genetically to the Wapishana, another Arawak-speaking tribe some 900 km to the east, and that the genetic distances between the Baniwa communities reflect the amount of historical admixture in a way that indicates which should be excluded from considerations of intertribal genetic distances. Finally, the genetic relation of the Baniwa to the nearby tribes is examined.

Population structure and blood genetics of the Pacaás Novos Indians of Brazil.

Two communities of relatively recently contacted Brazilian Indians, the Pacaás Novos, have been studied in relation to several demographic parameters and 28 genetic systems. The age and sex distribution, fertility and mortality patterns were not very distinct in the two populations, but they differed markedly in relation to the mating, migration and genetic data (six of the 19 variable loci showed differences higher than 10%). This was interpreted as being the consequence of a fission event, one of the many that may periodically occur, sometimes followed by fusions, in populations at this cultural level. The Pacaás Novos also show some distinctive features when previous genetic studies of South American Indians are reviewed, eight alleles of the variable 19 (LMS, R2, R0, Se, Hp1, Gm1,2;21, Gc1F and PGM1(1)), presenting differences varying between 12%-34% from the average obtained considering these earlier investigations.

New studies on the Macushi Indians of northern Brazil.

Demographic data and genetic information concerning 40 genetic systems are reported for three populations of Macushi Indians, and have been compared to those already obtained for three other communities of this tribe. These are young populations (mean age, 19 years), with a low sex ratio (90), low percentages of non-Indian ancestry (1-2%) and of marriages between locally born persons (34). Intertribal unions (14%) are less frequent than among their neighbours, the Wapishana. Fertility is high (average of 8.2 children per woman who completed reproduction), but the variance in family size and the frequency of premature deaths relatively low for populations at this cultural level. This conditions the lowest Index of Opportunity for Selection (0.45) calculated thus far among South American Indians. No variation was observed in 20 genetic systems, limited variation in 3, and larger variability in the remaining 17. In 13 of the 29 comparisons (45%), the Macushi gene frequencies present values in the middle third of the range observed among South American Indians. The previously reported private genetic polymorphism of esterase A was encountered in one of the three villages. A comparison of the genetic distances between villages with and without this polymorphism, and a similar comparison for the villages of the neighbouring Wapishana, yields no clue as to the tribe in which this polymorphism originated.