The impact of solvation on the structure and electric field strength in Li+GlyGly complexes.

To scrutinise the impact of electric fields on the structure and vibrations of biomolecules in the presence of water, we study the sequential solvation of lithium diglycine up to three water molecules with cryogenic infrared action spectroscopy. Conformer-specific IR-IR spectroscopy and H2O/D2O isotopic substitution experiments provide most of the information required to decipher the structure of the observed conformers. Additional confirmation is provided by scaled harmonic vibrational frequency calculations using MP2 and DFT. The first water molecule is shown to bind to the Li+ ion, which weakens the electric field experienced by the peptide and as a consequence, also the strength of an internal NH⋯NH2 hydrogen bond in the diglycine backbone. The strength of this hydrogen bond decreases approximately linearly with the number of water molecules as a result of the decreasing electric field strength and coincides with an increase in the number of conformers observed in our spectra. The addition of two water molecules is already sufficient to change the preferred conformation of the peptide backbone, allowing for Li+ coordination to the lone pair of the terminal amine group.

The impact of the electric field of metal ions on the vibrations and internal hydrogen bond strength in alkali metal ion di- and triglycine complexes.

Using infrared predissociation spectroscopy of cryogenic ions, we revisit the vibrational spectra of alkali metal ion (Li+, Na+, K+) di- and triglycine complexes. We assign their most stable conformation, which involves metal ion coordination to all C=O groups and an internal NH⋯NH2 hydrogen bond in the peptide backbone. An analysis of the spectral shifts of the OH and C=O stretching vibrations across the different metal ions and peptide chain lengths shows that these are largely caused by the electric field of the metal ion, which varies in strength as a function of the square of the distance. The metal ion-peptide interaction also remotely modulates the strength of internal hydrogen bonding in the peptide backbone via the weakening of the amide C=O bond, resulting in a decrease in internal hydrogen bond strength from Li+ > Na+ > K+.

Slow monomer vibrations in formic acid dimer: Stepping up the ladder with FTIR and Raman jet spectroscopy.

In an effort to extend the cold gas phase spectroscopic database of the cyclic formic acid dimer (FAD), we present and analyze the jet-cooled vibrational infrared and Raman spectrum of (HCOOH)2 in the monomer fingerprint region between 600 and 1500 cm-1. The present study bridges the gap between the intermolecular dimerization-induced and the carbonyl stretching fundamentals that have already been reexamined using jet-cooled or high-resolution spectroscopy. This completes the characterization of the jet-cooled vibrational (HCOOH)2 spectrum below the complex OH (CH) stretching fundamentals, and we report resonance-induced FAD combination/overtone transitions that will serve as a valuable reference for a theoretical modeling of its vibrational dynamics. As a by-product, several new formic acid trimer fundamentals are identified in the jet spectra and assigned with the help of second-order vibrational perturbation theory (VPT2). The polar formic acid dimer still eludes detection in a supersonic jet, but we are able to estimate an experimental upper-bound of the polar dimer-to-trimer-to-cyclic dimer intensity ratio to about 1:10:100 under typical expansion conditions. Using VPT2 with resonance treatment (VPT2+K), we reinvestigate the notorious ν22 resonance triad. Generally, we find that VPT2, which is, of course, inadequate for modeling the resonance-rich OH stretching spectrum of FAD, is performing very satisfactorily in predicting fundamental and two-quantum state term values for the slower modes below 1500 cm-1. As these modes are the building blocks for the ultrafast energy dissipation in the OH stretching region, the present work opens the door for its quantitative understanding.

CC-stretched formic acid: isomerisation, dimerisation, and carboxylic acid complexation.

The cis-trans-isomerism of the propiolic acid monomer (HC[triple bond, length as m-dash]C-COOH) is examined with linear Raman jet spectroscopy, yielding the first environment-free vibrational band centres of a higher-energy cis-rotamer beyond formic acid (HCOOH) in addition to all fundamentals and a large number of hot and combination/overtone bands of the trans-conformer. Two near-isoenergetic trans-fundamentals of different symmetry (CC[double bond, length as m-dash]O bend and OH torsion) prove to be a sensitive benchmarking target, as their energetic order is susceptible to the choice of electronic structure method, basis set size, and inclusion of vibrational anharmonicity. For the infrared- and Raman-active C[double bond, length as m-dash]O stretching fundamentals of the cyclic (C2h) trans-propiolic acid dimer, resonance couplings are found that in part extend to the Cs-symmetric heterodimer of trans-propiolic and trans-formic acid. Exploratory vibrational perturbation theory (VPT2) calculations show that all perturbing states involve displacements of the OH moieties located on the doubly hydrogen bonded ring. The comparison of the infrared spectra of the propiolic acid dimer and its heterodimer with formic acid to that of several other carboxylic acid dimers from the literature reveals a notable similarity regarding a non-fundamental dimer band around 1800 cm-1, which in most cases is so far unassigned. VPT2 calculations and a simple harmonic model suggest an assignment to a combination vibration of the symmetric and antisymmetric OH torsion.

Increasing the weights in the molecular work-out of cis- and trans-formic acid: extension of the vibrational database via deuteration.

The higher-energy cis- as well as the global minimum trans-rotamers of the four H/D isotopologues of the formic acid monomer have been examined with Raman jet spectroscopy extending the vibrational gas phase reference database by eleven new cis-band positions for HCOOD, DCOOH, and DCOOD. With these new additions, all O-H/D, C-H/D, and C[double bond, length as m-dash]O stretching as well as the O-D in-plane bending vibrations of these higher-energy rotamers are known in addition to the previously determined C-O stretch and OH torsion of cis-HCOOH. Further, a comparison of the vibrational spectra of all four H/D isotopologues of the globally stable trans-rotamer of formic acid is shown to be very helpful in revealing similarities and differences in these systems, particularly with regard to Fermi resonances. Amongst the most prominent ones is the ν5/2ν9 resonance doublet of trans-HCOOH, for which we provide more insight into a recently suggested label switch of the resonance partners via the comparison of infrared and Raman jet spectra.

Shifting formic acid dimers into perspective: vibrational scrutiny in helium nanodroplets.

A metastable dimer of formic acid has been prepared inside superfluid helium nanodroplets and examined using IR spectroscopy and quantum chemical calculations. This dimer has one strong O-HO[double bond, length as m-dash]C hydrogen bond and one weak C[double bond, length as m-dash]OH-C bond, which is the same bonding motif that exists between adjacent molecules in catemer chains found in the crystalline phase. The strongly bound OH stretching vibration of the metastable dimer shows clear evidence of significant coupling to other vibrational modes, but it is far less extensive than that seen for the doubly hydrogen bonded global energy minimum dimer structure, which dominates in the gas phase but is not observed in helium droplets. The width and shape of the resonance pattern can be qualitatively reproduced by B3LYP-D3(BJ)/aVTZ VPT2 calculations, if additional intensity scaling is applied. However, it is the MP2/aVTZ level of theory that consistently provides the closest agreement between calculated (VPT2) and experimental frequencies for the OH stretching vibration in the formic acid monomer and metastable dimer.

Stretching of cis-formic acid: warm-up and cool-down as molecular work-out.

A new technique to rotationally simplify and Raman-probe conformationally and vibrationally excited small molecules is applied to the cis-trans isomerism of formic acid. It quintuples the previously available gas phase vibrational data base on this excited form of a strongly anharmonic planar molecule despite its limited spectral resolution. The newly determined cis-formic acid fundamentals allow for a balanced vibrational benchmark on both rotamers of formic acid. Assuming the adequacy of vibrational perturbation theory, it reveals weaknesses of standard methods for these systems like B3LYP-D3(BJ)/aVQZ VPT2 or PBE0-D3(BJ)/aVQZ VPT2. The functionals ωB97-XD and M06-2X additionally suffer from severe integration grid size and symmetry dependencies. The vibrational benchmark suggests B2PLYP-D3(BJ)/aVQZ VPT2 and MP2/aVQZ VPT2 as partially competitive and in any case efficient alternatives to computationally demanding coupled cluster vibrational configuration interaction calculations. Whether this is due to fortuitous compensation between electronic structure and vibrational perturbation error remains to be explored.

Vibrational exciton coupling in homo and hetero dimers of carboxylic acids studied by linear infrared and Raman jet spectroscopy.

The jet-cooled band positions of the C=O stretching vibrations in the three hetero dimers composed of formic, acetic, and pivalic acid have been determined. Resonance patterns in the symmetric stretching modes have been corrected for by assuming a single bright state. An analysis of their Davydov or vibrational exciton splitting shows that the hetero dimer values can be averaged from the respective homo dimer splittings (ranging from 56 cm-1 for the acetic to 75 cm-1 for the formic acid dimer) with an error of ≤7%. The set of 6 exciton splittings and 6 independent downshifts caused by double hydrogen bonding serves as a reference data base for the benchmarking of computational methods. B3LYP is shown to be unable to describe the difference between the formic and acetic acid monomer but is otherwise satisfactory, if one assumes that exciton splittings are only weakly affected by anharmonic effects beyond the deconvoluted local resonances. However, a vibrational perturbation theory test points at significant diagonal anharmonicity effects for the exciton splitting. Spin-component-scaled and canonical MP2 fail in reproducing experimental dimer shifts and splittings in the harmonic approximation, but anharmonic corrections are expected to improve the performance. Harmonic PBEh-3c reproduces the experimental data set well after scaling. The experimental data set the stage for more rigorous anharmonic treatments of the multidimensional coupling of C=O oscillators in carboxylic acid dimers and trimers. In addition, we report the first vibrational jet spectrum of cis-formic acid in the C=O stretching region by heating the nozzle and the nozzle feed line of the Raman setup.

Formic acid aggregation in 2D supersonic expansions probed by FTIR imaging.

C=O stretching vibrations of formic acid trimers are assigned on the basis of FTIR and Raman jet spectroscopy and further validated by an FTIR imaging study based on their aggregation behavior in supersonic expansions. The effect of shock waves on cluster formation and decomposition is probed by shifting them into the field of view of the focal plane array detector. A double slit nozzle is presented that merges two supersonic jets for a more localized study of such shock waves.