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1.
Leukemia ; 31(12): 2702-2708, 2017 12.
Article in English | MEDLINE | ID: mdl-28663577

ABSTRACT

Myelodysplastic syndromes (MDS) represent a heterogeneous group of hematological clonal disorders. Here, we have tested the bone marrow (BM) cells from 38 MDS patients covering all risk groups in two immunodeficient mouse models: NSG and NSG-S. Our data show comparable level of engraftment in both models. The level of engraftment was patient specific with no correlation to any specific MDS risk group. Furthermore, the co-injection of mesenchymal stromal cells (MSCs) did not improve the level of engraftment. Finally, we have developed an in vitro two-dimensional co-culture system as an alternative tool to in vivo. Using our in vitro system, we have been able to co-culture CD34+ cells from MDS patient BM on auto- and/or allogeneic MSCs over 4 weeks with a fold expansion of up to 600 times. More importantly, these expanded cells conserved their MDS clonal architecture as well as genomic integrity.


Subject(s)
Bone Marrow Cells/pathology , Myelodysplastic Syndromes/pathology , Animals , Biomarkers , Bone Marrow Transplantation , Chromosome Aberrations , Disease Models, Animal , Female , Gene Expression , Genes, Reporter , Heterografts , Humans , Immunophenotyping , Male , Mesenchymal Stem Cells , Mice , Mice, Knockout , Myelodysplastic Syndromes/diagnosis , Myelodysplastic Syndromes/genetics , Myelodysplastic Syndromes/metabolism
2.
Leukemia ; 29(9): 1928-38, 2015 Sep.
Article in English | MEDLINE | ID: mdl-25943179

ABSTRACT

Bone marrow (BM) genetic abnormalities in myelodysplastic syndrome (MDS) have provided important biological and prognostic information; however, frequent BM sampling in older patients has been associated with significant morbidity. Utilizing single-nucleotide polymorphism array (SNP-A) and targeted gene sequencing (TGS) of 24 frequently mutated genes in MDS, we assessed the concordance of genetic abnormalities in BM and peripheral blood (PB) samples concurrently from 201 MDS patients. SNP-A karyotype in BM was abnormal in 108 (54%) and normal in 93 (46%) patients, with 95% (190/201) having an identical PB karyotype. The median copy number (CN) for deletions was significantly lower in BM (CN:1.4 (1-1.9)) than in PB (CN:1.5 (1-1.95), P<0.001). Using TGS, 71% (130/183) patients had BM somatic mutations with 95% (124/130) having identical mutations in PB. The mutant allele burden was lower in PB (median 27% (1-96%)) compared with BM (median 29% (1-100%); P=0.14) with no significant difference in the number, types of mutations or World Health Organization subtype. In all patients with discordant SNP (n=11) and mutation (n=6) profiles between BM and PB, shared abnormalities were always present irrespective of treatment status. Overall, 86% of patients had a clonal aberration with 95% having identical SNP-A karyotype and mutations in PB, thus enabling frequent assessment of response to treatment and disease evolution especially in patients with fibrotic or hypocellular marrows.


Subject(s)
Blood Cells/metabolism , Bone Marrow Cells/metabolism , Chromosome Aberrations , Genomics , Myelodysplastic Syndromes/genetics , Adolescent , Adult , Aged , Aged, 80 and over , Blood Cells/pathology , Bone Marrow/pathology , Bone Marrow Cells/pathology , Cohort Studies , DNA Copy Number Variations , DNA Mutational Analysis , Female , Genetic Association Studies , Humans , Karyotype , Male , Middle Aged , Mutation , Myelodysplastic Syndromes/diagnosis , Myelodysplastic Syndromes/pathology , Polymorphism, Single Nucleotide , Young Adult
3.
Oncogene ; 34(14): 1843-52, 2015 Apr 02.
Article in English | MEDLINE | ID: mdl-24814516

ABSTRACT

Cancer stem cells or tumour-propagating cells (TPCs) have been identified for a number of cancers, but data pertaining to their existence in lymphoma so far remain elusive. We show for the first time that a small subset of cells purified from human anaplastic lymphoma kinase (ALK)-positive and -negative, anaplastic large cell lymphoma cell lines and primary patient tumours using the side population (SP) technique have serial tumour-propagating capacity both in vitro and in vivo; they give rise to both themselves and the bulk tumour population as well as supporting growth of the latter through the production of soluble factors. In vivo serial dilution assays utilising a variety of model systems inclusive of human cell lines, primary human tumours and nucleophosmin (NPM)-ALK-induced murine tumours demonstrate the TPC frequency to vary from as many as 1/54 to 1/1336 tumour cells. In addition, the SP cells express higher levels of pluripotency-associated transcription factors and are enriched for a gene expression profile consistent with early thymic progenitors. Finally, our data show that the SP cells express higher levels of the NPM-ALK oncogene and are sensitive to an ALK inhibitor.


Subject(s)
Lymphoma, Large-Cell, Anaplastic/pathology , Nuclear Proteins/metabolism , Receptor Protein-Tyrosine Kinases/metabolism , Side-Population Cells/cytology , Side-Population Cells/metabolism , Adult , Aged, 80 and over , Anaplastic Lymphoma Kinase , Animals , Antineoplastic Agents, Phytogenic/pharmacology , Apoptosis , Cell Line, Tumor , Cell Proliferation , Cell Survival , Child , Child, Preschool , Crizotinib , Etoposide/pharmacology , Female , Gene Expression Profiling , Humans , Lymphoma, Large-Cell, Anaplastic/genetics , Mice , Mice, Inbred C57BL , Middle Aged , Neoplastic Stem Cells/cytology , Nucleophosmin , Pluripotent Stem Cells/cytology , Protein Kinase Inhibitors/pharmacology , Proto-Oncogene Proteins c-kit/biosynthesis , Pyrazoles/pharmacology , Pyridines/pharmacology , Receptor Protein-Tyrosine Kinases/antagonists & inhibitors , Signal Transduction
4.
Osteoporos Int ; 23(7): 1931-8, 2012 Jul.
Article in English | MEDLINE | ID: mdl-22159633

ABSTRACT

SUMMARY: The rates of bone mineral density testing for osteoporosis among healthy mid-life women are high, although their osteoporosis or fracture risk is low. To reduce unnecessary testing, we created and evaluated a tool to guide bone density testing based on the woman's age, weight, fracture history, and menopausal status. INTRODUCTION: This study aims to improve case finding of mid-life women with low bone mass on bone mineral density (BMD) assessment. METHODS: Among healthy women aged 40-60 years having their first BMD test, osteoporosis risk factors were assessed by questionnaire and BMD by dual-energy X-ray absorptiometry. The combination of risk factors that best discriminated women with/without low bone mass (T-score ≤ -2.0) was determined from the logistic regression model area under the curve (AUC) and internally validated using bootstrapping. Using the model odds ratios, a clinical prediction rule was created and its discriminative properties assessed and compared with that of the osteoporosis self-assessment tool (OST). Sensitivity analyses examined results for pre-/peri- and post-menopausal women, separately. RESULTS: Of 1,664 women referred for baseline BMD testing, 433 with conditions known to be associated with bone loss were excluded. Of 1,231 eligible women, 944 (77%) participated and 87 (9.2%) had low bone mass (35 pre-/peri- and 52 post-menopausal). Four risk factors for low bone mass were identified and incorporated into a clinical prediction rule. Selecting women for BMD testing with weight of ≤70 kg or any two of age >51, years' post-menopause of ≥1, and history of fragility fracture after age 40 was associated with 93% sensitivity to identify women with low bone mass, compared with 47% sensitivity for an OST score of ≤1 (AUC 0.75 versus OST AUC 0.69, p = 0.04). Results restricted to post-menopausal women were similar. CONCLUSIONS: Among healthy mid-life women receiving a baseline BMD test, few had low bone mass, supporting the need for guidance about testing. A prediction rule with four risk factors had improved sensitivity over the OST. Further validation is warranted.


Subject(s)
Bone Density/physiology , Decision Support Techniques , Osteoporosis/diagnosis , Absorptiometry, Photon/methods , Adult , Female , Humans , Middle Aged , Osteoporosis/etiology , Osteoporosis/physiopathology , Osteoporosis, Postmenopausal/diagnosis , Osteoporosis, Postmenopausal/etiology , Osteoporosis, Postmenopausal/physiopathology , Postmenopause/physiology , Predictive Value of Tests , Premenopause/physiology , Risk Factors , Unnecessary Procedures
5.
Phys Chem Chem Phys ; 13(32): 14302-10, 2011 Aug 28.
Article in English | MEDLINE | ID: mdl-21695318

ABSTRACT

Responsive monolayers are key building blocks for future applications in organic and molecular electronics in particular because they hold potential for tuning the physico-chemical properties of interfaces, including their energetics. Here we study a photochromic SAM based on a conjugated azobenzene derivative and its influence on the gold work function (Φ(Au)) when chemisorbed on its surface. In particular we show that the Φ(Au) can be modulated with external stimuli by controlling the azobenzene trans/cis isomerization process. This phenomenon is characterized experimentally by four different techniques, kelvin probe, kelvin probe force microscopy, electroabsorption spectroscopy and ultraviolet photoelectron spectroscopy. The use of different techniques implies exposing the SAM to different measurement conditions and different preparation methods, which, remarkably, do not alter the observed work function change (Φ(trans)-Φ(cis)). Theoretical calculations provided a complementary insight crucial to attain a deeper knowledge on the origin of the work function photo-modulation.


Subject(s)
Azo Compounds/chemistry , Gold/chemistry , Membranes, Artificial , Quantum Theory , Azo Compounds/chemical synthesis , Molecular Structure , Particle Size , Photochemical Processes , Stereoisomerism , Surface Properties
6.
Osteoarthritis Cartilage ; 19(4): 366-74, 2011 Apr.
Article in English | MEDLINE | ID: mdl-21324369

ABSTRACT

OBJECTIVE: To highlight seminal publications in the past year on the topic of non-pharmacologic management of osteoarthritis (OA). DESIGN: A systematic search of the PUBMED and Cochrane databases from September 2009 to September 2010 was conducted to identify articles reporting on studies examining the safety or efficacy of non-pharmacologic therapies in the management of OA. Non-pharmacologic therapies were those considered in the 2008 OARSI OA guidelines. Identified articles were reviewed for quality; those of highest quality and deemed to have greatest potential impact on the management of OA were summarized. RESULTS: The search identified 117 unique articles. Of these, four studies were chosen to highlight. A nested two-stage trial found that traditional Chinese acupuncture (TCA) was not superior to sham acupuncture, but that the providers' style affected both pain reduction and satisfaction with treatment, suggesting that the analgesic benefits of acupuncture may be partially mediated by the acupuncturists' behavior. A systematic review found little evidence of a significant effect for electrostimulation vs sham or no intervention on pain in knee OA. A single-blinded trial of Tai Chi vs attention controls found that 12 weeks of Tai Chi was associated with improvements in symptoms and disability in patients with knee OA. A randomized trial of early ACL reconstructive surgery and rehabilitation vs structured rehabilitation alone in subjects with acute anterior cruciate ligament tears found that, at 24 months following randomization, all study participants had improved, suggesting that a strategy of structured rehabilitation followed acute ACL injury may preclude the need for surgical reconstruction. CONCLUSIONS: High quality studies of the safety and efficacy of non-pharmacologic agents in the management of OA remain challenging due to difficulties with adequate blinding and appropriate selection of attention controls. High quality studies suggest modest, if any, benefit of many non-pharmacologic therapies over attention control or placebo, but a significant impact of both over no intervention at all.


Subject(s)
Osteoarthritis/therapy , Acupuncture , Aged , Exercise , Female , Humans , Male , Middle Aged , Osteoarthritis/rehabilitation , Pain Management , Patient Satisfaction , Physical Therapy Specialty , Tai Ji , Transcutaneous Electric Nerve Stimulation
7.
Vet Comp Oncol ; 7(2): 92-105, 2009 Jun.
Article in English | MEDLINE | ID: mdl-19453363

ABSTRACT

This study employed proteomic and bioinformatic approaches to identify serum biomarkers in canine lymphoma patients. Chilled serum samples derived from non-lymphoma (n = 92) and lymphoma (n = 87) patients were shipped from first opinion veterinary practices, subjected to ion exchange chromatography and analysed by surface-enhanced laser desorption ionization mass spectrometry. Nineteen serum protein peaks were identified between the two groups as being significantly different (P < 0.05) based upon their normalized ion intensities. Two biomarkers were identified that were capable of differentiating lymphoma and non-lymphoma patients. Analysis of the test data provided a positive predictive value (PPV) of 82%. A clinical follow-up study was carried out on 96 canine patients suspected of having lymphoma. Evaluation of this data gave a specificity value of 91%, sensitivity of 75%, PPV of 80% and negative predictive value of 88%. In conclusion, the expression pattern of two serum biomarkers has enabled serum samples to be classified into either lymphoma or non-lymphoma categories.


Subject(s)
Blood Proteins/analysis , Dog Diseases/blood , Lymphoma/veterinary , Proteomics , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/veterinary , Age Factors , Animals , Biomarkers, Tumor , Case-Control Studies , Diagnosis, Differential , Dogs , Lymphoma/blood , Predictive Value of Tests , Sensitivity and Specificity
8.
Br J Ophthalmol ; 93(2): 191-7, 2009 Feb.
Article in English | MEDLINE | ID: mdl-19019928

ABSTRACT

AIM: To analyse cases of recurrent ectasia in donor corneas after penetrating keratoplasty (PK) for keratoconus. METHODS: Data on 25 patients (36 eyes) with recurrent ectasia were retrospectively analysed in this study. The main outcome measures were time to development of recurrent ectasia after first PK for keratoconus, change in keratometric sphere and astigmatism between final suture removal and development of recurrent ectasia, status of regrafts for recurrent ectasia, and histopathology of grafts excised for recurrent ectasia. RESULTS: The age at first PK was 32.6 (SD 8.5) years, and ectasia developed 21.9 (7.0) years after PK. The mean keratometric sphere and cylinder increased by 4.2 D and 3.0 D, respectively, between final suture removal and diagnosis of recurrent ectasia. Ectasia was often preceded by thinning without bulging of the recipient stroma at the graft-host junction. Fifteen eyes (13 patients) were regrafted for recurrent ectasia, and histopathology of the excised grafts showed changes characteristic of keratoconus in the donor tissue in all cases. Two regrafts (two eyes of one patient) developed ectasia again, with one eye requiring a third PK to improve vision. CONCLUSIONS: Recurrent ectasia was diagnosed on average two decades after PK. Ectatic changes were often bilateral and occasionally recurred after regrafting, suggesting that host cellular and/or biochemical factors may be responsible. Repeat PK for recurrent ectasia is successful in the intermediate term.


Subject(s)
Keratoconus/surgery , Keratoplasty, Penetrating , Adult , Astigmatism/etiology , Cornea/pathology , Dilatation, Pathologic/etiology , Female , Humans , Keratoconus/pathology , Male , Middle Aged , Recurrence , Reoperation , Retrospective Studies , Treatment Outcome , Young Adult
9.
Mol Vis ; 14: 2190-203, 2008.
Article in English | MEDLINE | ID: mdl-19052649

ABSTRACT

PURPOSE: Degenerative retinal diseases are characterized by inflammation and microglial activation. The nonpsychoactive cannabinoid, cannabidiol (CBD), is an anti-inflammatory in models of diabetes and glaucoma. However, the cellular and molecular mechanisms are largely unknown. We tested the hypothesis that retinal inflammation and microglia activation are initiated and sustained by oxidative stress and p38 mitogen-activated protein kinase (MAPK) activation, and that CBD reduces inflammation by blocking these processes. METHODS: Microglial cells were isolated from retinas of newborn rats. Tumor necrosis factor (TNF)-alpha levels were estimated with ELISA. Nitric oxide (NO) was determined with a NO analyzer. Superoxide anion levels were determined by the chemiluminescence of luminol derivative. Reactive oxygen species (ROS) was estimated by measuring the cellular oxidation products of 2', 7'-dichlorofluorescin diacetate. RESULTS: In retinal microglial cells, treatment with lipopolysaccharide (LPS) induced immediate NADPH oxidase-generated ROS. This was followed by p38 MAPK activation and resulted in a time-dependent increase in TNF-alpha production. At a later phase, LPS induced NO, ROS, and p38 MAPK activation that peaked at 2-6 h and was accompanied by morphological change of microglia. Treatment with 1 microM CBD inhibited ROS formation and p38 MAPK activation, NO and TNF-alpha formation, and maintained cell morphology. In addition, LPS-treated rat retinas showed an accumulation of macrophages and activated microglia, significant levels of ROS and nitrotyrosine, activation of p38 MAPK, and neuronal apoptosis. These effects were blocked by treatment with 5 mg/kg CBD. CONCLUSIONS: Retinal inflammation and degeneration in uveitis are caused by oxidative stress. CBD exerts anti-inflammatory and neuroprotective effects by a mechanism that involves blocking oxidative stress and activation of p38 MAPK and microglia.


Subject(s)
Cannabidiol/pharmacology , Endotoxins/pharmacology , Neuroprotective Agents/pharmacology , Uveitis/chemically induced , Uveitis/enzymology , p38 Mitogen-Activated Protein Kinases/metabolism , Animals , Cell Death/drug effects , Enzyme Activation/drug effects , Enzyme Inhibitors/pharmacology , Lipopolysaccharides/pharmacology , Macrophages/enzymology , Macrophages/pathology , Male , Microglia/drug effects , Microglia/enzymology , Microglia/pathology , Models, Biological , NADPH Oxidases/antagonists & inhibitors , NADPH Oxidases/metabolism , Nitric Oxide/metabolism , Oxidative Stress/drug effects , Peroxynitrous Acid/metabolism , Rats , Rats, Sprague-Dawley , Retina/drug effects , Retina/enzymology , Retina/pathology , Superoxides/metabolism , Tumor Necrosis Factor-alpha/metabolism
10.
Genetics ; 180(1): 27-39, 2008 Sep.
Article in English | MEDLINE | ID: mdl-18723894

ABSTRACT

The molecular mechanisms mediating eukaryotic replication termination and pausing remain largely unknown. Here we present the molecular characterization of Rtf1 that mediates site-specific replication termination at the polar Schizosaccharomyces pombe barrier RTS1. We show that Rtf1 possesses two chimeric myb/SANT domains: one is able to interact with the repeated motifs encoded by the RTS1 element as well as the elements enhancer region, while the other shows only a weak DNA binding activity. In addition we show that the C-terminal tail of Rtf1 mediates self-interaction, and deletion of this tail has a dominant phenotype. Finally, we identify a point mutation in Rtf1 domain I that converts the RTS1 element into a replication barrier of the opposite polarity. Together our data establish that multiple protein DNA and protein-protein interactions between Rtf1 molecules and both the repeated motifs and the enhancer region of RTS1 are required for site-specific termination at the RTS1 element.


Subject(s)
DNA Replication , Enhancer Elements, Genetic , Saccharomyces cerevisiae Proteins/genetics , Schizosaccharomyces/genetics , TATA-Box Binding Protein/genetics , Amino Acid Motifs , Amino Acid Sequence , DNA/chemistry , DNA, Ribosomal/chemistry , Fungal Proteins/chemistry , Models, Genetic , Molecular Sequence Data , Point Mutation , Protein Structure, Tertiary , Sequence Homology, Amino Acid , Two-Hybrid System Techniques
11.
Thesis in French | AIM (Africa) | ID: biblio-1276931

ABSTRACT

Le service de pesee est une unite de la PMI enfant ou se deroule l'activite de surveillance de la croissance staturo-ponderale et du developpement psychomoteur de l'enfant des 0 a 5 ans. Notre etude qui a eu lieu dans 11 centres de sante publics disposant d'un service de pesee consiste dans ces unites a evaluer d'une part leur capacite fonctionnelle et d'autre part la qualite des activites qui y sont menees dans le but de contribuer a l'amelioration de la qualite de la surveillance de la croissance des enfants de O a 5ans. Nous avons realise une etude transversale qui a consistee a observer 400 pesees des enfants sains et a interroger 39 agents de sante des services de pesee dans 11 etablissements sanitaires publics peripheriques de la ville d'Abidjan. Au terme de nos travaux; l'etude a revele que: *Tous les services de pesee ne fonctionnent que la matinee. *72pour cent de ces services pratiquent une tarification de parallele. *55pour cent des structures ne disposent pas de vitamine A. *Peu de supports pedagogiques sont disponibles. *L'age moyen des prestataires est de 43;2 ans et ceux-ci sont domines par les femmes (90;7pour cent). *Seuls 2;8pour cent du personnel a beneficie d'un recyclage. *94;9pour cent des prestataires estiment ne pas avoir de supervision reguliere. *Seulement dans 14;8pour cent des cas; les prestataires tracent la courbe de poids et l'interpretent dans 8pour cent des cas. *87;8pour cent des enfants peses sont des nourrissons. *Dans l'ensemble la surveillance de la croissance des enfants n'est pas bien faite juisqu'elle ne permet pas en general de depister les cas de malnutritions frustres. Au regard de ces resultats plusieurs recommandations ont ete faites pour ameliorer la qualite de la surveillance de la croissance et du developpement psychomoteur des enfants. Dans le but de reduire la prevalence de la malnutrition


Subject(s)
Body Weight , Child , Growth and Development
12.
Br J Ophthalmol ; 89(11): 1453-7, 2005 Nov.
Article in English | MEDLINE | ID: mdl-16234452

ABSTRACT

BACKGROUND/AIM: Acrylic lens size and shape may influence the rate of posterior capsule opacification (PCO) and need for Nd:YAG capsulotomy. The aim of this study is to compare the Nd:YAG capsulotomy rate of the three piece acrylic/PMMA AcrySof MA series lens with the one piece acrylic AcrySof SA series lens. METHODS: 434 eyes of 329 patients who had cataract extraction and implantation of one of four types of intraocular lenses (IOLs) were evaluated for rate of Nd:YAG capsulotomy. 176 eyes received the acrylic AcrySof MA30AC IOL, 71 eyes the acrylic AcrySof MA60AC IOL, 45 eyes the acrylic AcrySof SA30AL IOL, and 142 eyes the acrylic AcrySof SA60AT IOL. RESULTS: The rates of Nd:YAG capsulotomy with the three piece IOL (MA30AC/MA60AC) and the one piece IOL (SA30AL/SA60AT) were 1.2% and 2.1% at 6 months, 2.8% and 5.9% at 12 months, and 3.6% and 7.5% at 24 months, respectively. The incidence of Nd:YAG capsulotomy was higher in patients who received the one piece IOL (p=0.01, log rank test). There was no difference in Nd:YAG capsulotomy rates when comparing lens optic size, age, sex, history of pars plana vitrectomy, and diabetes mellitus. CONCLUSIONS: This study shows a greater incidence of Nd:YAG capsulotomy in patients who receive one piece acrylic AcrySof lenses when compared to those who receive three piece acrylic AcrySof lenses.


Subject(s)
Cataract/etiology , Laser Therapy , Lens Capsule, Crystalline/surgery , Lenses, Intraocular/adverse effects , Acrylic Resins , Adolescent , Adult , Aged , Aged, 80 and over , Female , Follow-Up Studies , Humans , Male , Middle Aged , Prosthesis Design , Recurrence , Reoperation/instrumentation , Survival Analysis
13.
Bioinformatics ; 18(3): 395-404, 2002 Mar.
Article in English | MEDLINE | ID: mdl-11934738

ABSTRACT

MOTIVATION: MALDI mass spectrometry is able to elicit macromolecular expression data from cellular material and when used in conjunction with Ciphergen protein chip technology (also referred to as SELDI-Surface Enhanced Laser Desorption/Ionization), it permits a semi-high throughput approach to be taken with respect to sample processing and data acquisition. Due to the large array of data that is generated from a single analysis (8-10000 variables using a mass range of 2-15 kDa-this paper) it is essential to implement the use of algorithms that can detect expression patterns from such large volumes of data correlating to a given biological/pathological phenotype from multiple samples. If successful, the methodology could be extrapolated to larger data sets to enable the identification of validated biomarkers correlating strongly to disease progression. This would not only serve to enable tumours to be classified according to their molecular expression profile but could also focus attention upon a relatively small number of molecules that might warrant further biochemical/molecular characterization to assess their suitability as potential therapeutic targets. RESULTS: Using a multi-layer perceptron Artificial Neural Network (ANN) (Neuroshell 2) with a back propagation algorithm we have developed a prototype approach that uses a model system (comprising five low and seven high-grade human astrocytomas) to identify mass spectral peaks whose relative intensity values correlate strongly to tumour grade. Analyzing data derived from MALDI mass spectrometry in conjunction with Ciphergen protein chip technology we have used relative importance values, determined from the weights of trained ANNs (Balls et al., Water, Air Soil Pollut., 85, 1467-1472, 1996), to identify masses that accurately predict tumour grade. Implementing a three-stage procedure, we have screened a population of approximately 100000-120000 variables and identified two ions (m/z values of 13454 and 13457) whose relative intensity pattern was significantly reduced in high-grade astrocytoma. The data from this initial study suggests that application of ANN-based approaches can identify molecular ion patterns which strongly associate with disease grade and that its application to larger cohorts of patient material could potentially facilitate the rapid identification of validated biomarkers having significant clinical (i.e. diagnostic/prognostic) potential for the field of cancer biology. AVAILIBILITY: Neuroshell 2 is commercially available from ward systems.


Subject(s)
Astrocytoma/classification , Biomarkers, Tumor/analysis , Central Nervous System Neoplasms/classification , Neural Networks, Computer , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Feasibility Studies , Humans , Models, Neurological , Sensitivity and Specificity
14.
Radiat Prot Dosimetry ; 93(1): 11-7, 2001.
Article in English | MEDLINE | ID: mdl-11548321

ABSTRACT

A new thermoluminescence glow curve deconvolution (GCD) function is introduced which accurately describes first order thermoluminescence (TL) curves. The new GCD function is found to be accurate for first order TL peaks with a wide variety of the values of the TL kinetic parameters E and s. The 3-parameter Weibull probability function is used with the function variables being the maximum peak intensity (Im), the temperature of the maximum peak intensity (Tm) and the Weibull width parameter b. An analytical expression is derived from which the activation energy E can be calculated as a function of Tm and the Weibull width parameter b. The accuracy of the Weibull fit was tested using the ten reference glow curves of the GLOCANIN intercomparison program and the Weibull distribution was found to be highly effective in describing both single and complex TL glow curves. The goodness of fit of the Weibull function is described by the Figure of Merit (FOM) which is found to be of comparable accuracy to the best FOM values of the GLOCANIN program. The FOM values are also comparable to the FOM values obtained using the recently published GCD functions of Kitis et al. It is found that the TL kinetic analysis of complex first-order TL glow curves can be performed with high accuracy and speed by using commercially available software packages.


Subject(s)
Thermoluminescent Dosimetry , Computer Simulation , Luminescent Measurements , Models, Theoretical , Thermoluminescent Dosimetry/instrumentation , Thermoluminescent Dosimetry/methods
15.
Lancet ; 357(9262): 1093-4, 2001 Apr 07.
Article in English | MEDLINE | ID: mdl-11297962

ABSTRACT

The incidence of inflammatory bowel disease in children in western countries may be rising. Since there is no prospective national data on the incidence of inflammatory bowel disease in the UK and Republic of Ireland (ROI), we undertook a prospective survey to determine this incidence. The incidence during 1998 and 1999 was 5.2/100,000 per year in children aged younger than 16 years. Those from an Asian background were over-represented and more likely to have ulcerative colitis.


Subject(s)
Inflammatory Bowel Diseases/epidemiology , Adolescent , Child , Child, Preschool , Colitis/epidemiology , Colitis, Ulcerative/epidemiology , Crohn Disease/epidemiology , Female , Health Surveys , Humans , Incidence , Infant , Inflammatory Bowel Diseases/ethnology , Ireland/epidemiology , Male , Prospective Studies , United Kingdom/epidemiology
17.
Biochem Cell Biol ; 78(4): 415-26, 2000.
Article in English | MEDLINE | ID: mdl-11012080

ABSTRACT

Polyamines are known to be involved in cell growth regulation in breast cancer. To evaluate the efficacy of bis(ethyl)polyamine analogs for breast cancer therapy and to understand their mechanism of action we measured the effects of a series of polyamine analogs on cell growth, activities of enzymes involved in polyamine metabolism, intracellular polyamine levels, and the uptake of putrescine and spermidine using MCF-7 breast cancer cells. The IC50 values for cell growth inhibition of three of the compounds, N1,N12-bis(ethyl)spermine, N1,N11-bis(ethyl)norspermine, and N1,N14-bis(ethyl)homospermine, were in the range of 1-2 microM. Another group of three compounds showed antiproliferative activity at about 5 microM level. These compounds are also capable of suppressing colony formation in soft agar assay and inducing apoptosis of MCF-7 cells. The highly effective growth inhibitory agents altered the activity of polyamine biosynthetic and catabolic enzymes and down-regulated the transport of natural polyamines, although each compound produced a unique pattern of alterations in these parameters. HPLC analysis showed that cellular uptake of bis(ethyl)polyamines was highest for bis(ethyl)spermine. We also analyzed polyamine analog conformations and their binding to DNA minor or major grooves by molecular modelling and molecular dynamics simulations. Results of these analyses indicate that tetramine analogs fit well in the minor groove of DNA whereas, larger compounds extend out of the minor groove. Although major groove binding was also possible for the short tetramine analogs, this interaction led to a predominantly bent conformation. Our studies show growth inhibitory activities of several potentially important analogs on breast cancer cells and indicate that multiple sites are involved in the mechanism of action of these analogs. While the activity of an analog may depend on the sum of these different effects, molecular modelling studies indicate a correlation between antiproliferative activity and stable interactions of the analogs with major or minor grooves of DNA.


Subject(s)
Antineoplastic Agents/pharmacology , Apoptosis/drug effects , Breast Neoplasms/pathology , Cell Division/drug effects , Polyamines/pharmacology , Acetyltransferases/metabolism , Adenosylmethionine Decarboxylase/metabolism , Antineoplastic Agents/chemistry , Antineoplastic Agents/therapeutic use , Breast Neoplasms/drug therapy , Breast Neoplasms/metabolism , DNA/chemistry , Female , Humans , Models, Molecular , Ornithine Decarboxylase/metabolism , Polyamines/chemistry , Polyamines/therapeutic use , Tumor Cells, Cultured , Tumor Stem Cell Assay
18.
Cancer Immunol Immunother ; 48(7): 374-81, 1999 Oct.
Article in English | MEDLINE | ID: mdl-10501850

ABSTRACT

Progress towards developing vaccines that can stimulate an immune response against growing tumours has involved the identification of the protein antigens associated with a given tumour type. Epitope mapping of tumour antigens for HLA class I- and class II-restricted binding motifs followed by immunization with these peptides has induced protective immunity in murine models against cancers expressing the antigen. MHC class I molecules presenting the appropriate peptides are necessary to provide the specific signals for recognition and killing by cytotoxic T cells (CTL). The principle mechanism of tumour escape is the loss, downregulation or alteration of HLA profiles that may render the target cell resistant to CTL lysis, even if the cell expresses the appropriate tumour antigen. In human tumours HLA loss may be as high as 50%, inferring that a reduction in protein levels might offer a survival advantage to the tumour cells. Alternatively, MHC loss may render tumour cells susceptible to natural killer cell-mediated lysis because they are known to act as ligands for killer inhibitory receptors (KIRs). We review the molecular features of MHC class I and class II antigens and discuss how surface MHC expression may be regulated upon cellular transformation. In addition, selective loss of MHC molecules may alter target tumour cell susceptibility to lymphocyte killing. The development of clinical immunotherapy will need to consider not only the expression of relevant CTL target MHC proteins, but also HLA inhibitory to NK and T cells.


Subject(s)
Histocompatibility Antigens Class II/biosynthesis , Histocompatibility Antigens Class I/biosynthesis , Major Histocompatibility Complex/immunology , Neoplasms/immunology , Antigen Presentation/immunology , Cell Membrane/immunology , Cell Membrane/metabolism , Cell Transformation, Neoplastic/immunology , Histocompatibility Antigens Class I/immunology , Histocompatibility Antigens Class II/immunology , Humans , Killer Cells, Natural/immunology , Structure-Activity Relationship , T-Lymphocytes/immunology
19.
J Cell Sci ; 110 ( Pt 19): 2461-72, 1997 Oct.
Article in English | MEDLINE | ID: mdl-9410884

ABSTRACT

Tissue transglutaminase (tTgase, type II) is a Ca2+-dependent GTP binding protein which crosslinks proteins via (epsilon)((gamma)-glutamyl)lysine bridges. Although essentially a cytosolic enzyme there is increasing evidence to suggest the enzyme is externalised where it may play a role in extracellular matrix organisation. To investigate the function of this enzyme in a human umbilical endothelial cell line ECV304 tTgase expression was reduced in these cells by up to 90% by stable transfection with a 1.1. kb antisense construct in the plasmid vector pSG5. Two clones showing a reduction in expression of tTgase activity of 70 and 90% have been isolated and characterised. These clones show a number of phenotypic differences when compared to the parent cell line and the transfected controls which include reduced cell spreading and a decreased adhesion of cells on different substrata as measured by their susceptibility to removal by trypsin. Reduced cell spreading in the antisense transfected clones was accompanied by a decrease in the crosslinking of fibronectin into polymeric multimers which could be correlated to the amount of tTgase externalised by cells. A novel assay was developed to measure externalised tTgase activity which is cell mediated, inhibited by preincubation of cells with anti-tTgase antibody and relies on the incorporation of biotinylated cadaverine into fibronectin. The results of these experiments suggest that externalised tTgase may play a key role in a number of cell behavioural patterns which might be related to the enzymes ability to bind and crosslink fibronectin.


Subject(s)
Endothelium, Vascular/enzymology , Fibronectins/metabolism , GTP Phosphohydrolases/biosynthesis , GTP-Binding Proteins , Transglutaminases/biosynthesis , Antibodies, Monoclonal/metabolism , Antibodies, Monoclonal/pharmacology , Biotinylation , Blotting, Northern , Cadaverine/metabolism , Cell Adhesion/immunology , Cell Line , Cell Membrane/drug effects , Cell Membrane/enzymology , Cell Size/immunology , Clone Cells/enzymology , Endothelium, Vascular/cytology , Enzyme Activation/immunology , GTP Phosphohydrolases/genetics , GTP Phosphohydrolases/immunology , GTP Phosphohydrolases/pharmacology , Humans , Polymers/metabolism , Protein Glutamine gamma Glutamyltransferase 2 , RNA, Antisense , Transfection , Transglutaminases/genetics , Transglutaminases/immunology , Transglutaminases/pharmacology
20.
Appl Opt ; 35(34): 6825-6, 1996 Dec 01.
Article in English | MEDLINE | ID: mdl-21151272

ABSTRACT

We measure the refractive index of materials using a CCD camera with a laser beam profiler in the familiar Brewster's angle experiment. This allows us to isolate quickly and accurately the Brewster's angle close to the resolution of the sample rotation stage. The uncertainty in the index of refraction measurement is similar to that of the standard minimum-deviation technique.

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