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1.
Int J Mol Sci ; 25(15)2024 Jul 26.
Article in English | MEDLINE | ID: mdl-39125738

ABSTRACT

The transcription of Arabidopsis organellar genes is performed by three nuclear-encoded RNA polymerases: RPOTm, RPOTmp, and RPOTp. The RPOTmp protein possesses ambiguous transit peptides, allowing participation in gene expression control in both mitochondria and chloroplasts, although its function in plastids is still under discussion. Here, we show that the overexpression of RPOTmp in Arabidopsis, targeted either to mitochondria or chloroplasts, disturbs the dormant seed state, and it causes the following effects: earlier germination, decreased ABA sensitivity, faster seedling growth, and earlier flowering. The germination of RPOTmp overexpressors is less sensitive to NaCl, while rpotmp knockout is highly vulnerable to salt stress. We found that mitochondrial dysfunction in the rpotmp mutant induces an unknown retrograde response pathway that bypasses AOX and ANAC017. Here, we show that RPOTmp transcribes the accD, clpP, and rpoB genes in plastids and up to 22 genes in mitochondria.


Subject(s)
Arabidopsis Proteins , Arabidopsis , Chloroplasts , Gene Expression Regulation, Plant , Germination , Mitochondria , Transcriptome , Arabidopsis/genetics , Arabidopsis/growth & development , Mitochondria/metabolism , Mitochondria/genetics , Chloroplasts/metabolism , Chloroplasts/genetics , Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism , Germination/genetics , DNA-Directed RNA Polymerases/genetics , DNA-Directed RNA Polymerases/metabolism , Seedlings/genetics , Seedlings/growth & development , Plants, Genetically Modified/growth & development , Plants, Genetically Modified/genetics
2.
Mitochondrion ; 60: 43-58, 2021 09.
Article in English | MEDLINE | ID: mdl-34303006

ABSTRACT

Mitochondria possess transport mechanisms for import of RNA and DNA. Based on import into isolated Solanum tuberosum mitochondria in the presence of competitors, inhibitors or effectors, we show that DNA fragments of different size classes are taken up into plant organelles through distinct channels. Alternative channels can also be activated according to the amount of DNA substrate of a given size class. Analyses of Arabidopsis thaliana knockout lines pointed out a differential involvement of individual voltage-dependent anion channel (VDAC) isoforms in the formation of alternative channels. We propose several outer and inner membrane proteins as VDAC partners in these pathways.


Subject(s)
Arabidopsis/genetics , DNA, Mitochondrial/genetics , DNA, Plant/genetics , Mitochondria/genetics , Mitochondrial Membranes/physiology , Solanum tuberosum/genetics , Arabidopsis/metabolism , Biological Transport/genetics , Gene Deletion , Solanum tuberosum/metabolism
3.
J Exp Bot ; 67(19): 5657-5669, 2016 10.
Article in English | MEDLINE | ID: mdl-27591433

ABSTRACT

In a number of dicotyledonous plants, including Arabidopsis, the transcription of organellar genes is performed by three nuclear-encoded RNA polymerases, RPOTm, RPOTmp, and RPOTp. RPOTmp is a protein with a dual targeting, which is presumably involved in the control of gene expression in both mitochondria and chloroplasts. A previous study of the Arabidopsis insertion rpotmp mutant showed that it has retarded growth and development, altered leaf morphology, changed expression of mitochondrial and probably some chloroplast genes, and decreased activities of the mitochondrial respiratory complexes. To date, there is no clear evidence as to which of these disorders are associated with a lack of RPOTmp in each of the two organelles. The aim of this study was to elucidate the role that this RNA polymerase specifically plays in mitochondria and chloroplasts. Two sets of Arabidopsis transgenic lines with complementation of RPOTmp function in either mitochondria or chloroplasts were obtained. It was found that the recovery of RPOTmp RNA polymerase activity in chloroplasts, although restoring the transcription from the RPOTmp-specific PC promoter, did not lead to compensation of the mutant growth defects. In contrast, the rpotmp plants expressing RPOTmp with mitochondrial targeting restored the level of mitochondrial transcripts and exhibit a phenotype resembling that of the wild-type plants. We conclude that despite its localization in two cell compartments, Arabidopsis RPOTmp plays an important role in mitochondria, but not in chloroplasts.


Subject(s)
Arabidopsis Proteins/physiology , Arabidopsis/enzymology , Chloroplasts/enzymology , DNA-Directed RNA Polymerases/physiology , Mitochondria/enzymology , Arabidopsis/metabolism , Arabidopsis/physiology , Chloroplasts/metabolism , Gene Expression Regulation, Plant/genetics , Gene Expression Regulation, Plant/physiology , Mitochondria/metabolism , Plants, Genetically Modified
4.
J Fish Biol ; 89(4): 1947-1957, 2016 Oct.
Article in English | MEDLINE | ID: mdl-27488622

ABSTRACT

Cytogenetic and molecular analyses enabled identification of two cytotypes among individuals of the spotted scorpion fish Scorpaena plumieri from Margarita Island, Venezuela. Cytotype 1 was characterized by 48 subtelo-acrocentric chromosomes and fundamental number (number of chromosome arms; FN) equalled 48, while cytotype 2 was characterized by two metacentric and 46 subtelo-acrocentric chromosomes and FN was 50. These cytotypes also differed in the location of the ribosomal gene clusters and in the distribution of the constitutive heterochromatin. Moreover, fish from the cytotypes 1 and 2 were found to belong to distinct mitochondrial lineages. The presence of two S. plumieri cytotypes from two lineages separated by high genetic distance suggests that they correspond to sympatric cryptic species.


Subject(s)
Cytogenetics , Perciformes/classification , Perciformes/genetics , Animals , Caribbean Region , Heterochromatin , In Situ Hybridization, Fluorescence , Multigene Family/genetics , Species Specificity , Venezuela
5.
Biochim Biophys Acta ; 1853(12): 3165-81, 2015 Dec.
Article in English | MEDLINE | ID: mdl-26376423

ABSTRACT

Mitochondria have retained indispensable but limited genetic information and they import both proteins and nucleic acids from the cytosol. RNA import is essential for gene expression and regulation, whereas competence for DNA uptake is likely to contribute to organellar genome dynamics and evolution. Contrary to protein import mechanisms, the way nucleic acids cross the mitochondrial membranes remains poorly understood. Using proteomic, genetic and biochemical approaches with both plant and yeast organelles, we develop here a model for DNA uptake into mitochondria. The first step includes the voltage-dependent anion channel and an outer membrane-located precursor fraction of a protein normally located in the inner membrane. To proceed, the DNA is then potentially recruited in the intermembrane space by an accessible subunit of one of the respiratory chain complexes. Final translocation through the inner membrane remains the most versatile but points to the components considered to make the mitochondrial permeability transition pore. Depending on the size, DNA and RNA cooperate or compete for mitochondrial uptake, which shows that they share import mechanisms. On the other hand, our results imply the existence of more than one route for nucleic acid translocation into mitochondria.


Subject(s)
Mitochondria/metabolism , Nucleic Acids/metabolism , Arabidopsis/metabolism , Biological Transport , Saccharomyces cerevisiae/metabolism
6.
Open Dent J ; 3: 55-8, 2009 Apr 16.
Article in English | MEDLINE | ID: mdl-19543542

ABSTRACT

Since the introduction of nickel-titanium alloy to endodontics, there have been many changes in instrument design, but no significant improvements in the raw material properties, or enhancements in the manufacturing process. Recently, a new method to produce nickel-titanium rotary (NTR) instruments has been developed, in an attempt to obtain instruments that are more flexible and resistant to fatigue. NTR instruments produced using the process of twisting (TF, SybronEndo, Orange, CA) were compared to NTR instruments from different manufacturers produced by a traditional grinding process. The aim of the study was to investigate whether cyclic fatigue resistance is increased for TF NTR files. Tests were performed with a cyclic fatigue device that evaluated cycles to failure of rotary instruments inside curved artificial canals. Results indicated that size 06-25 TF instruments showed a significant increase (P< .05). In the mean number of cycles to failurewhen compared to the other tested 06-25 NTR. Hence, it can be concluded that size 06-25 TF NTR instruments were found to be significantly more resistant to fatigue than those produced with the traditional grinding process.

7.
Minerva Stomatol ; 58(5): 217-24, 2009 May.
Article in English | MEDLINE | ID: mdl-19436251

ABSTRACT

AIM: The aim of the present study was to investigate the in vitro sealing ability of a new obturating material (Real Seal 1, SybronEndo, Orange, CA, USA) and compare it with the Thermafil (Dentsply Maillefer, Baillargues, Switzerland) and One-Step systems (CMS Dental, Copenhagen, Denmark). METHODS: Forty-four freshly extracted lower premolars teeth were selected and a root canal treatment was performed using a crown-down Nickel-Titanium rotary preparation technique. Teeth were randomized into three groups (N.=14): 1) Thermafil group; 2) One/step group; 3) Real Seal 1 (RS1) group. The remaining two teeth served as controls. A fluid filtration system device was utilized to assess quantitatively the microleakage. Statistical analyses were performed by ANOVA and significance was set at 95%. RESULTS: Data clearly showed that the RS1 provided the best results, showing a minimal leakage after 24 hours. Statystical analysis showed a significant difference about the RS1 group, the Thermafil and One/Step group, while no significant differences were noted between these last two groups. Results show that the number of teeth that had no (=0) leakage was higher in the RS1 group (8 specimens) than in the remaining ones (1 and 1 specimen, respectively). CONCLUSIONS: Under the conditions of the present experimental test, the new RS1 material (carrier-based Resilon) provided excellent preliminary results showing sealing ability at 24 hours significantly better that traditional carrier-based gutta-percha systems.


Subject(s)
Root Canal Filling Materials/pharmacology , Root Canal Obturation , Bicuspid/drug effects , Gutta-Percha/pharmacology , Humans , In Vitro Techniques , Materials Testing , Plastics/pharmacology , Random Allocation , Resins, Synthetic/pharmacology , Tooth Permeability/drug effects
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