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1.
Front Cell Infect Microbiol ; 13: 1271092, 2023.
Article in English | MEDLINE | ID: mdl-37860069

ABSTRACT

Over the past decade it has become clear that various aspects of host physiology, metabolism, and immunity are intimately associated with the microbiome and its interactions with the host. Specifically, the gut microbiome composition and function has been shown to play a critical role in the etiology of different intestinal and extra-intestinal diseases. While attempts to identify a common pattern of microbial dysbiosis linked with these diseases have failed, multiple studies show that bacterial communities in the gut are spatially organized and that disrupted spatial organization of the gut microbiome is often a common underlying feature of disease pathogenesis. As a result, focus over the last few years has shifted from analyzing the diversity of gut microbiome by sequencing of the entire microbial community, towards understanding the gut microbiome in spatial context. Defining the composition and spatial heterogeneity of the microbiome is critical to facilitate further understanding of the gut microbiome ecology. Development in single cell genomics approach has advanced our understanding of microbial community structure, however, limitations in approaches exist. Single cell genomics is a very powerful and rapidly growing field, primarily used to identify the genetic composition of microbes. A major challenge is to isolate single cells for genomic analyses. This review summarizes the different approaches to study microbial genomes at single-cell resolution. We will review new techniques for microbial single cell sequencing and summarize how these techniques can be applied broadly to answer many questions related to the microbiome composition and spatial heterogeneity. These methods can be used to fill the gaps in our understanding of microbial communities.


Subject(s)
Gastrointestinal Microbiome , Microbiota , Humans , Bacteria/genetics , Dysbiosis/complications , Single-Cell Analysis
2.
Cell ; 186(22): 4851-4867.e20, 2023 10 26.
Article in English | MEDLINE | ID: mdl-37848036

ABSTRACT

Post-acute sequelae of COVID-19 (PASC, "Long COVID") pose a significant global health challenge. The pathophysiology is unknown, and no effective treatments have been found to date. Several hypotheses have been formulated to explain the etiology of PASC, including viral persistence, chronic inflammation, hypercoagulability, and autonomic dysfunction. Here, we propose a mechanism that links all four hypotheses in a single pathway and provides actionable insights for therapeutic interventions. We find that PASC are associated with serotonin reduction. Viral infection and type I interferon-driven inflammation reduce serotonin through three mechanisms: diminished intestinal absorption of the serotonin precursor tryptophan; platelet hyperactivation and thrombocytopenia, which impacts serotonin storage; and enhanced MAO-mediated serotonin turnover. Peripheral serotonin reduction, in turn, impedes the activity of the vagus nerve and thereby impairs hippocampal responses and memory. These findings provide a possible explanation for neurocognitive symptoms associated with viral persistence in Long COVID, which may extend to other post-viral syndromes.


Subject(s)
Post-Acute COVID-19 Syndrome , Serotonin , Humans , COVID-19/complications , Disease Progression , Inflammation , Post-Acute COVID-19 Syndrome/blood , Post-Acute COVID-19 Syndrome/pathology , Serotonin/blood , Virus Diseases
3.
Mol Pharm ; 20(9): 4491-4504, 2023 09 04.
Article in English | MEDLINE | ID: mdl-37590399

ABSTRACT

Tuberculosis (TB), caused by Mycobacterium tuberculosis (Mtb), remains a leading cause of death with 1.6 million deaths worldwide reported in 2021. Oral pyrazinamide (PZA) is an integral part of anti-TB regimens, but its prolonged use has the potential to drive the development of PZA-resistant Mtb. PZA is converted to the active moiety pyrazinoic acid (POA) by the Mtb pyrazinamidase encoded by pncA, and mutations in pncA are associated with the majority of PZA resistance. Conventional oral and parenteral therapies may result in subtherapeutic exposure in the lung; hence, direct pulmonary administration of POA may provide an approach to rescue PZA efficacy for treating pncA-mutant PZA-resistant Mtb. The objectives of the current study were to (i) develop novel dry powder POA formulations, (ii) assess their feasibility for pulmonary delivery using physicochemical characterization, (iii) evaluate their pharmacokinetics (PK) in the guinea pig model, and (iv) develop a mechanism-based pharmacokinetic model (MBM) using in vivo PK data to select a formulation providing adequate exposure in epithelial lining fluid (ELF) and lung tissue. We developed three POA formulations for pulmonary delivery and characterized their PK in plasma, ELF, and lung tissue following passive inhalation in guinea pigs. Additionally, the PK of POA following oral, intravenous, and intratracheal administration was characterized in guinea pigs. The MBM was used to simultaneously model PK data following administration of POA and its formulations via the different routes. The MBM described POA PK well in plasma, ELF, and lung tissue. Physicochemical analyses and MBM predictions suggested that POA maltodextrin was the best among the three formulations and an excellent candidate for further development as it has: (i) the highest ELF-to-plasma exposure ratio (203) and lung tissue-to-plasma exposure ratio (30.4) compared with POA maltodextrin and leucine (75.7/16.2) and POA leucine salt (64.2/19.3) and (ii) the highest concentration in ELF (CmaxELF: 171 nM) within 15.5 min, correlating with a fast transfer into ELF after pulmonary administration (KPM: 22.6 1/h). The data from the guinea pig allowed scaling, using the MBM to a human dose of POA maltodextrin powder demonstrating the potential feasibility of an inhaled product.


Subject(s)
Body Fluids , Pyrazinamide , Humans , Animals , Guinea Pigs , Leucine , Powders
4.
Mem Cognit ; 51(8): 1836-1848, 2023 11.
Article in English | MEDLINE | ID: mdl-37326785

ABSTRACT

The changing state effect is the finding that a stream of irrelevant sounds that change more (e.g., different digits in random order) disrupts memory more than a stream of irrelevant sounds that change less (e.g., a single digit repeated over and over). According to the Object-Oriented Episodic Record (O-OER) model, the changing state effect will be observed only in memory tasks that have an order component or which induce serial rehearsal or serial processing. In contrast, other accounts-including the Feature Model, the Primacy Model, and various attentional theories-predict that the changing state effect should be observable when there is no order component. Experiment 1 first demonstrated that the irrelevant stimuli created for the current experiments produced a changing state effect in immediate serial recall in both on-campus and online samples. Then, three experiments assessed whether a changing state effect is observable in a surprise 2AFC recognition test. Experiment 2 replicated Stokes and Arnell (2012, Memory & Cognition, 40, 918-931), who found that although irrelevant sounds reduce performance on a surprise recognition test of words presented previously in a lexical decision task, they do not produce a changing state effect. Experiments 3 and 4 used two different encoding tasks (pleasantness and frequency judgment) and also found no changing state effect. The results support the prediction of the O-OER model and provide additional evidence against the other accounts.


Subject(s)
Speech Perception , Speech , Humans , Mental Recall , Learning , Memory, Short-Term
5.
bioRxiv ; 2023 Apr 03.
Article in English | MEDLINE | ID: mdl-37066292

ABSTRACT

Tuberculosis (TB), caused by Mycobacterium tuberculosis ( Mtb ), remains a leading cause of death with 1.6 million deaths worldwide reported in 2021. Oral pyrazinamide (PZA) is an integral part of anti-TB regimens, but its prolonged use has the potential to drive development of PZA resistant Mtb . PZA is converted to the active moiety pyrazinoic acid (POA) by the Mtb pyrazinamidase encoded by pncA , and mutations in pncA are associated with the majority of PZA resistance. Conventional oral and parenteral therapies may result in subtherapeutic exposure in the lung, hence direct pulmonary administration of POA may provide an approach to rescue PZA efficacy for treating pncA- mutant PZA-resistant Mtb . The objectives of the current study were to i) develop novel dry powder POA formulations ii) assess their feasibility for pulmonary delivery using physicochemical characterization, iii) evaluate their pharmacokinetics (PK) in the guinea pig model and iv) develop a mechanism based pharmacokinetic model (MBM) using in vivo PK data to select a formulation providing adequate exposure in epithelial lining fluid (ELF) and lung tissue. We developed three POA formulations for pulmonary delivery and characterized their PK in plasma, ELF, and lung tissue following passive inhalation in guinea pigs. Additionally, the PK of POA following oral, intravenous and intratracheal administration was characterized in guinea pigs. The MBM was used to simultaneously model PK data following administration of POA and its formulations via the different routes. The MBM described POA PK well in plasma, ELF and lung tissue. Physicochemical analyses and MBM predictions suggested that POA maltodextrin was the best among the three formulations and an excellent candidate for further development as it has: (i) the highest ELF-to-plasma exposure ratio (203) and lung tissue-to-plasma exposure ratio (30.4) compared with POA maltodextrin and leucine (75.7/16.2) and POA leucine salt (64.2/19.3); (ii) the highest concentration in ELF ( Cmac ELF : 171 nM) within 15.5 minutes, correlating with a fast transfer into ELF after pulmonary administration ( k PM : 22.6 1/h). The data from the guinea pig allowed scaling, using the MBM to a human dose of POA maltodextrin powder demonstrating the potential feasibility of an inhaled product.

6.
J Cell Biol ; 222(3)2023 03 06.
Article in English | MEDLINE | ID: mdl-36729146

ABSTRACT

The exocyst imparts spatial control during exocytic vesicle tethering through its interactions with proteins and lipids on the vesicle and the plasma membrane. One such interaction is with the vesicle tether Sro7, although the outcome of this interaction is poorly understood. Here, we describe how Sro7 binding to the Exo84 subunit results in activation of the exocyst complex which leads to an increase in avidity for the Rab GTPase Sec4 and an increase in exocyst-mediated vesicle tethering. Gain-of-function (GOF) mutations in Exo84 that mimic Sro7 activation replicate these biochemical changes and result in allosteric changes within the complex. Direct comparison of GOF mutants which mimic Sro7- and Rho/Cdc42-activation of the exocyst reveals distinct mechanisms and outcomes. We propose a model by which these two activation pathways reside within the same tethering complex but remain insulated from one another. Structural modeling suggests a related mechanism for Sro7 activation of the exocyst in yeast and Ral GTPase activation of the exocyst in animal cells.


Subject(s)
Adaptor Proteins, Signal Transducing , Exocytosis , Saccharomyces cerevisiae Proteins , rab GTP-Binding Proteins , Animals , Adaptor Proteins, Signal Transducing/metabolism , Allosteric Regulation , Cytoplasm/metabolism , Exocytosis/physiology , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Vesicular Transport Proteins/metabolism , rab GTP-Binding Proteins/metabolism
7.
Cell Host Microbe ; 30(6): 836-847.e6, 2022 06 08.
Article in English | MEDLINE | ID: mdl-35568027

ABSTRACT

Changes in the microbiota composition are associated with many human diseases, but factors that govern strain abundance remain poorly defined. We show that a commensal Escherichia coli strain and a pathogenic Salmonella enterica serovar Typhimurium isolate both utilize nitrate for intestinal growth, but each accesses this resource in a distinct biogeographical niche. Commensal E. coli utilizes epithelial-derived nitrate, whereas nitrate in the niche occupied by S. Typhimurium is derived from phagocytic infiltrates. Surprisingly, avirulent S. Typhimurium was shown to be unable to utilize epithelial-derived nitrate because its chemotaxis receptors McpB and McpC exclude the pathogen from the niche occupied by E. coli. In contrast, E. coli invades the niche constructed by S. Typhimurium virulence factors and confers colonization resistance by competing for nitrate. Thus, nutrient niches are not defined solely by critical resources, but they can be further subdivided biogeographically within the host into distinct microhabitats, thereby generating new niche opportunities for distinct bacterial species.


Subject(s)
Gastrointestinal Microbiome , Salmonella typhimurium , Escherichia coli , Humans , Nitrates , Nutrients
8.
Curr Opin Microbiol ; 63: 221-230, 2021 10.
Article in English | MEDLINE | ID: mdl-34428628

ABSTRACT

A central goal of microbiome research is to understand the factors that balance gut-associated microbial communities, thereby creating longitudinal and cross-sectional heterogeneity in their composition and density. Whereas the diet dictates taxa dominance, microbial communities are linked intimately to host physiology through digestive and absorptive functions that generate longitudinal heterogeneity in nutrient availability. Additionally, the host differentially controls the access to electron acceptors along the longitudinal axis of the intestine to drive the development of microbial communities that are dominated by facultatively anaerobic bacteria in the small intestine or obligately anaerobic bacteria in the large intestine. By secreting mucus and antimicrobials, the host further constructs microhabitats that generate cross-sectional heterogeneity in the colonic microbiota composition. Here we will review how understanding the host factors involved in generating longitudinal and cross-sectional microbiota heterogeneity helps define physiological states that are characteristic of or appropriate to a homeostatic microbiome.


Subject(s)
Gastrointestinal Microbiome , Microbiota , Cross-Sectional Studies , Diet
9.
Annu Rev Immunol ; 39: 1-18, 2021 04 26.
Article in English | MEDLINE | ID: mdl-33902314

ABSTRACT

An imbalance in the microbiota may contribute to many human illnesses, which has prompted efforts to rebalance it by targeting the microbes themselves. However, by supplying the habitat, the host wields a prominent influence over microbial growth at body surfaces, raising the possibility that rebalancing the microbiota by targeting our immune system would be a viable alternative. Host control mechanisms that sculpt the microbial habitat form a functional unit with the microbiota, termed microbiota-nourishing immunity, that confers colonization resistance against pathogens. The host components of microbiota-nourishing immunity can be viewed as habitat filters that select for microbial traits licensing growth and survival in host habitat patches. Here we review current knowledge of how host-derived habitat filters shape the size, species composition, and spatial heterogeneity of the microbiota and discuss whether these host control mechanisms could be harnessed for developing approaches to rebalance microbial communities during dysbiosis.


Subject(s)
Dysbiosis , Microbiota , Animals , Humans
10.
Cell Host Microbe ; 28(6): 789-797.e5, 2020 12 09.
Article in English | MEDLINE | ID: mdl-33301718

ABSTRACT

The colonic microbiota exhibits cross-sectional heterogeneity, but the mechanisms that govern its spatial organization remain incompletely understood. Here we used Citrobacter rodentium, a pathogen that colonizes the colonic surface, to identify microbial traits that license growth and survival in this spatial niche. Previous work showed that during colonic crypt hyperplasia, type III secretion system (T3SS)-mediated intimate epithelial attachment provides C. rodentium with oxygen for aerobic respiration. However, we find that prior to the development of colonic crypt hyperplasia, T3SS-mediated intimate attachment is not required for aerobic respiration but for hydrogen peroxide (H2O2) respiration using cytochrome c peroxidase (Ccp). The epithelial NADPH oxidase NOX1 is the primary source of luminal H2O2 early after C. rodentium infection and is required for Ccp-dependent growth. Our results suggest that NOX1-derived H2O2 is a resource that governs bacterial growth and survival in close proximity to the mucosal surface during gut homeostasis.


Subject(s)
Citrobacter rodentium/growth & development , Citrobacter rodentium/metabolism , Cytochrome-c Peroxidase/physiology , Hydrogen Peroxide/metabolism , NADPH Oxidase 1/physiology , Anaerobiosis , Animals , Colon/microbiology , DNA, Bacterial , Feces/microbiology , Female , Germ-Free Life , Homeostasis , Host-Pathogen Interactions , Intestinal Mucosa/microbiology , Mice , Mice, Inbred C57BL , Mice, Knockout , RNA, Ribosomal, 16S , Specific Pathogen-Free Organisms , Type III Secretion Systems/physiology
11.
Ethn Health ; 25(6): 862-873, 2020 08.
Article in English | MEDLINE | ID: mdl-29506393

ABSTRACT

Chinese American women have lower rates of mammography screening compared with non-Hispanic White women. Although the extent of perceived barriers, as conceptualized by the Health Belief Model, have been shown to distinguish between currently non-adherent Chinese American women who have ever and never had a mammogram, it is less clear which types of perceived barriers differentiate them. One hundred twenty-eight Chinese American women in the New York metropolitan area who had not had a mammogram in the past year completed baseline assessments for a mammography framing intervention study. Demographics, medical access variables, and perceived barriers to mammography (lack of access, lack of need for screening, and modesty) were used to predict mammography history (ever versus never screened). Fifty-five women (43%) reported having been screened at least once. A sequential logistic regression showed that English speaking ability and having health insurance significantly predicted mammography history. However, these control variables became non-significant when the three barrier factors were included in the final model. Women who reported a greater lack of access (OR = 0.36, p < .05) and greater lack of need (OR = 0.27, p < .01) were less likely to be ever screeners. Unexpectedly, women who reported greater modesty were more likely to be ever screeners (OR = 4.78, p < .001). The results suggest that interventions for Chinese American women should identify and target specific perceived barriers with consideration of previous adherence.


Subject(s)
Asian/psychology , Early Detection of Cancer , Health Services Accessibility , Mammography/economics , Mammography/psychology , Patient Acceptance of Health Care , Breast Neoplasms/prevention & control , China/ethnology , Female , Humans , Mammography/statistics & numerical data , Middle Aged , New York
12.
Soc Sci Med ; 239: 112494, 2019 10.
Article in English | MEDLINE | ID: mdl-31513931

ABSTRACT

RATIONALE: Breast cancer is the second leading cause of cancer death among women. Disparities in breast cancer mortality rates adversely affect racial/ethnic minority women. Mammography screening is the most effective early detection method and means of reducing mortality rates. Yet, barriers prevent racial/ethnic minority women from participating in regular screening. OBJECTIVE: This review aimed to summarize self-reported barriers to mammography screening in racial/ethnic minority women in studies using open-ended assessments and closed-ended assessments. METHOD: Literature searches were conducted in two databases, PsycINFO and PubMed. Barriers were detailed in full by barrier type (psychological/knowledge-related, logistical, cultural/immigration-related, and social/interpersonal) and summarized briefly by race/ethnicity (African American/Black, Asian/Pacific Islander, Hispanic, American Indian/Native American, and Middle Eastern). RESULTS: Twenty-two open-ended and six closed-ended studies were identified as eligible for this review. Overall, racial/ethnic minority women identified common logistical and psychological/knowledge-related barriers. Additionally, women reported cultural/immigration-related and social/interpersonal barriers that were closely tied to their racial/ethnic identities. CONCLUSIONS: It was concluded that cultural/immigration-related barriers may be the only barrier type that is unique to racial/ethnic minority women. Thus, designing studies of barriers around race and ethnicity is not always appropriate, and other demographic factors are sometimes a more important focus. The variability in 'barrier' definitions, how data were collected and reported, and the appropriateness of closed-ended measures were also examined. This literature may benefit from detailed and strategically designed studies that allow more clear-cut conclusions and better comparison across studies as well as improving closed-ended measures by incorporating insights from investigations using open-ended inquiry.


Subject(s)
Breast Neoplasms/ethnology , Ethnicity/statistics & numerical data , Health Services Accessibility/statistics & numerical data , Mammography/statistics & numerical data , Minority Groups/statistics & numerical data , Age Factors , Cultural Competency , Early Detection of Cancer/statistics & numerical data , Emigrants and Immigrants/psychology , Emigrants and Immigrants/statistics & numerical data , Ethnicity/psychology , Female , Health Knowledge, Attitudes, Practice/ethnology , Humans , Minority Groups/psychology , Patient Acceptance of Health Care/ethnology , Research Design , Socioeconomic Factors , Time Factors , Transportation
13.
Nat Microbiol ; 4(6): 1057-1064, 2019 06.
Article in English | MEDLINE | ID: mdl-30911125

ABSTRACT

Lack of reproducibility is a prominent problem in biomedical research. An important source of variation in animal experiments is the microbiome, but little is known about specific changes in the microbiota composition that cause phenotypic differences. Here, we show that genetically similar laboratory mice obtained from four different commercial vendors exhibited marked phenotypic variation in their susceptibility to Salmonella infection. Faecal microbiota transplant into germ-free mice replicated donor susceptibility, revealing that variability was due to changes in the gut microbiota composition. Co-housing of mice only partially transferred protection against Salmonella infection, suggesting that minority species within the gut microbiota might confer this trait. Consistent with this idea, we identified endogenous Enterobacteriaceae, a low-abundance taxon, as a keystone species responsible for variation in the susceptibility to Salmonella infection. Protection conferred by endogenous Enterobacteriaceae could be modelled by inoculating mice with probiotic Escherichia coli, which conferred resistance by using its aerobic metabolism to compete with Salmonella for resources. We conclude that a mechanistic understanding of phenotypic variation can accelerate development of strategies for enhancing the reproducibility of animal experiments.


Subject(s)
Enterobacteriaceae/physiology , Gastrointestinal Microbiome , Microbial Interactions/physiology , Salmonella Infections, Animal/microbiology , Animal Experimentation , Animals , Biomarkers , Biosynthetic Pathways , Disease Models, Animal , Enterobacteriaceae/classification , Escherichia coli/physiology , Fecal Microbiota Transplantation , Gastrointestinal Microbiome/genetics , Germ-Free Life , Mice , Mice, Inbred C57BL , Phenotype , Probiotics , Reproducibility of Results , Salmonella
14.
Elife ; 82019 01 03.
Article in English | MEDLINE | ID: mdl-30604681

ABSTRACT

The SecA2 protein export system is critical for the virulence of Mycobacterium tuberculosis. However, the mechanism of this export pathway remains unclear. Through a screen for suppressors of a secA2 mutant, we identified a new player in the mycobacterial SecA2 pathway that we named SatS for SecA2 (two) Suppressor. In M. tuberculosis, SatS is required for the export of a subset of SecA2 substrates and for growth in macrophages. We further identify a role for SatS as a protein export chaperone. SatS exhibits multiple properties of a chaperone, including the ability to bind to and protect substrates from aggregation. Our structural studies of SatS reveal a distinct combination of a new fold and hydrophobic grooves resembling preprotein-binding sites of the SecB chaperone. These results are significant in better defining a molecular pathway for M. tuberculosis pathogenesis and in expanding our appreciation of the diversity among chaperones and protein export systems.


Subject(s)
Adenosine Triphosphatases/metabolism , Bacterial Proteins/metabolism , Macrophages/microbiology , Membrane Transport Proteins/metabolism , Mycobacterium tuberculosis/metabolism , Animals , Cytoplasm/metabolism , Hydrophobic and Hydrophilic Interactions , Macrophages/metabolism , Mice , Mice, Inbred C57BL , Molecular Chaperones/metabolism , Mutation , Mycobacterium smegmatis/metabolism , Phenotype , Protein Binding , Protein Domains , Protein Transport , Virulence
15.
PLoS One ; 13(9): e0204495, 2018.
Article in English | MEDLINE | ID: mdl-30261007

ABSTRACT

New therapeutic strategies are needed to treat drug resistant tuberculosis (TB) and to improve treatment for drug sensitive TB. Pyrazinamide (PZA) is a critical component of current first-line TB therapy. However, the rise in PZA-resistant TB cases jeopardizes the future utility of PZA. To address this problem, we used the guinea pig model of TB and tested the efficacy of an inhaled dry powder combination, referred to as Pyrazinoic acid/ester Dry Powder (PDP), which is comprised of pyrazinoic acid (POA), the active moiety of PZA, and pyrazinoic acid ester (PAE), which is a PZA analog. Both POA and PAE have the advantage of being able to act on PZA-resistant Mycobacterium tuberculosis. When used in combination with oral rifampicin (R), inhaled PDP had striking effects on tissue pathology. Effects were observed in lungs, the site of delivery, but also in the spleen and liver indicating both local and systemic effects of inhaled PDP. Tissue granulomas that harbor M. tuberculosis in a persistent state are a hallmark of TB and they pose a challenge for therapy. Compared to other treatments, which preferentially cleared non-necrotic granulomas, R+PDP reduced necrotic granulomas more effectively. The increased ability of R+PDP to act on more recalcitrant necrotic granulomas suggests a novel mechanism of action. The results presented in this report reveal the potential for developing therapies involving POA that are optimized to target necrotic as well as non-necrotic granulomas as a means of achieving more complete sterilization of M. tuberculosis bacilli and preventing disease relapse when therapy ends.


Subject(s)
Antitubercular Agents/administration & dosage , Granuloma, Respiratory Tract/drug therapy , Pyrazinamide/analogs & derivatives , Tuberculosis, Pulmonary/drug therapy , Aerosols , Animals , Antitubercular Agents/pharmacokinetics , Bacterial Load , Disease Models, Animal , Drug Therapy, Combination , Dry Powder Inhalers , Granuloma, Respiratory Tract/microbiology , Granuloma, Respiratory Tract/pathology , Guinea Pigs , Male , Mycobacterium tuberculosis/drug effects , Necrosis , Pyrazinamide/administration & dosage , Pyrazinamide/pharmacokinetics , Respiratory Tract Absorption , Rifampin/administration & dosage , Tuberculosis, Multidrug-Resistant/drug therapy , Tuberculosis, Multidrug-Resistant/pathology , Tuberculosis, Pulmonary/microbiology , Tuberculosis, Pulmonary/pathology
16.
J Clin Nutr Food Sci ; 1(1): 035-39, 2018.
Article in English | MEDLINE | ID: mdl-31119216

ABSTRACT

Cyclophosphamide (CP) is a complex multifaceted developmental toxicant, with mechanisms of teratogenesis thought to include production of excessive reactive oxygen species (ROS). N-acetyl-L-cysteine (NAC) is a powerful antioxidant that may decrease the toxicity of certain anticancer drugs, such as doxorubicin and CP. The current study explored the potential of NAC to attenuate CP-induced damage to the conceptus. Mated ICR mice were orally dosed with 150 mg/kg/d NAC, 150 mg/kg/d NAC + 20 mg/kg CP, CP only, or vehicle only. CP was administered by intraperitoneal injection on gestation day (GD) 10, and NAC was given by gavage on gestation days 6-13. Dams were sacrificed on GD 17, and their litters were examined for adverse effects. There were significant reductions in the incidences of digit, limb, and tail defects, as well as anasarca and macroglossia, in fetuses exposed to the combination of NAC and CP, compared to fetuses exposed to CP only. NAC did not increase the incidence of any defects when compared to control. Fetuses exposed to NAC weighed significantly more than the average vehicle control fetus. The data indicate that NAC, a well-tolerated, relatively inexpensive antioxidant, appears to reduce the incidence of specific cyclophosphamide-induced malformations when administered prior to, concurrently with, and after exposure to CP.

17.
Microbiol Spectr ; 5(2)2017 04.
Article in English | MEDLINE | ID: mdl-28387178

ABSTRACT

All bacteria utilize pathways to export proteins from the cytoplasm to the bacterial cell envelope or extracellular space. Many exported proteins function in essential physiological processes or in virulence. Consequently, the responsible protein export pathways are commonly essential and/or are important for pathogenesis. The general Sec protein export pathway is conserved and essential in all bacteria, and it is responsible for most protein export. The energy for Sec export is provided by the SecA ATPase. Mycobacteria and some Gram-positive bacteria have two SecA paralogs: SecA1 and SecA2. SecA1 is essential and works with the canonical Sec pathway to perform the bulk of protein export. The nonessential SecA2 exports a smaller subset of proteins and is required for the virulence of pathogens such as Mycobacterium tuberculosis. In this article, we review our current understanding of the mechanism of the SecA1 and SecA2 export pathways and discuss some of their better-studied exported substrates. We focus on proteins with established functions in M. tuberculosis pathogenesis and proteins that suggest potential roles for SecA1 and SecA2 in M. tuberculosis dormancy.


Subject(s)
Adenosine Triphosphatases/metabolism , Bacterial Proteins/metabolism , Mycobacterium tuberculosis/metabolism , Cell Wall/metabolism , Lipoproteins/metabolism , Metabolic Networks and Pathways , Mycobacterium tuberculosis/enzymology , Protein Transport , SecA Proteins
18.
Science ; 353(6305): 1249-53, 2016 09 16.
Article in English | MEDLINE | ID: mdl-27634526

ABSTRACT

Citrobacter rodentium uses a type III secretion system (T3SS) to induce colonic crypt hyperplasia in mice, thereby gaining an edge during its competition with the gut microbiota through an unknown mechanism. Here, we show that by triggering colonic crypt hyperplasia, the C. rodentium T3SS induced an excessive expansion of undifferentiated Ki67-positive epithelial cells, which increased oxygenation of the mucosal surface and drove an aerobic C. rodentium expansion in the colon. Treatment of mice with the γ-secretase inhibitor dibenzazepine to diminish Notch-driven colonic crypt hyperplasia curtailed the fitness advantage conferred by aerobic respiration during C. rodentium infection. We conclude that C. rodentium uses its T3SS to induce histopathological lesions that generate an intestinal microenvironment in which growth of the pathogen is fueled by aerobic respiration.


Subject(s)
Citrobacter rodentium/pathogenicity , Colitis/microbiology , Colitis/pathology , Enterobacteriaceae Infections/microbiology , Enterobacteriaceae Infections/pathology , Virulence Factors/physiology , Aerobiosis , Amyloid Precursor Protein Secretases/antagonists & inhibitors , Animals , Citrobacter rodentium/genetics , Colitis/drug therapy , Colon/microbiology , Colon/pathology , Cytochromes/genetics , Cytochromes/physiology , Dibenzazepines/therapeutic use , Electron Transport Chain Complex Proteins/genetics , Electron Transport Chain Complex Proteins/physiology , Gene Deletion , Hyperplasia/microbiology , Hyperplasia/pathology , Intestinal Mucosa/microbiology , Intestinal Mucosa/pathology , Ki-67 Antigen/analysis , Mice , Mice, Inbred C3H , Mice, Inbred C57BL , Nitrates/metabolism , Oxidoreductases/genetics , Oxidoreductases/physiology , Receptors, Notch/metabolism , Virulence Factors/genetics
19.
Mol Microbiol ; 100(1): 90-107, 2016 Apr.
Article in English | MEDLINE | ID: mdl-26712165

ABSTRACT

Mycobacterium tuberculosis proteins that are exported out of the bacterial cytoplasm are ideally positioned to be virulence factors; however, the functions of individual exported proteins remain largely unknown. Previous studies identified Rv0199 as an exported membrane protein of unknown function. Here, we characterized the role of Rv0199 in M. tuberculosis virulence using an aerosol model of murine infection. Rv0199 appears to be a member of a Mce-associated membrane (Mam) protein family leading us to rename it OmamA, for orphaned Mam protein A. Consistent with a role in Mce transport, we showed OmamA is required for cholesterol import, which is a Mce4-dependent process. We further demonstrated a function for OmamA in stabilizing protein components of the Mce1 transporter complex. These results indicate a function of OmamA in multiple Mce transporters and one that may be analogous to the role of VirB8 in stabilizing Type IV secretion systems, as structural similarities between Mam proteins and VirB8 proteins are predicted by the Phyre 2 program. In this study, we provide functional information about OmamA and shed light on the function of Mam family proteins in Mce transporters.


Subject(s)
Bacterial Proteins/metabolism , Membrane Proteins/metabolism , Mycobacterium tuberculosis/metabolism , Animals , Bacterial Proteins/genetics , Cholesterol/metabolism , Disease Models, Animal , Gene Deletion , Gene Order , Membrane Proteins/genetics , Mice , Mutation , Mycobacterium tuberculosis/genetics , Phenotype , Protein Binding , Protein Transport , Tuberculosis/microbiology , Tuberculosis/mortality , Tuberculosis/pathology , Virulence Factors
20.
J Bacteriol ; 198(4): 720-30, 2015 Dec 14.
Article in English | MEDLINE | ID: mdl-26668263

ABSTRACT

UNLABELLED: While SecA is the ATPase component of the major bacterial secretory (Sec) system, mycobacteria and some Gram-positive pathogens have a second paralog, SecA2. In bacteria with two SecA paralogs, each SecA is functionally distinct, and they cannot compensate for one another. Compared to SecA1, SecA2 exports a distinct and smaller set of substrates, some of which have roles in virulence. In the mycobacterial system, some SecA2-dependent substrates lack a signal peptide, while others contain a signal peptide but possess features in the mature protein that necessitate a role for SecA2 in their export. It is unclear how SecA2 functions in protein export, and one open question is whether SecA2 works with the canonical SecYEG channel to export proteins. In this study, we report the structure of Mycobacterium tuberculosis SecA2 (MtbSecA2), which is the first structure of any SecA2 protein. A high level of structural similarity is observed between SecA2 and SecA1. The major structural difference is the absence of the helical wing domain, which is likely to play a role in how MtbSecA2 recognizes its unique substrates. Importantly, structural features critical to the interaction between SecA1 and SecYEG are preserved in SecA2. Furthermore, suppressor mutations of a dominant-negative secA2 mutant map to the surface of SecA2 and help identify functional regions of SecA2 that may promote interactions with SecYEG or the translocating polypeptide substrate. These results support a model in which the mycobacterial SecA2 works with SecYEG. IMPORTANCE: SecA2 is a paralog of SecA1, which is the ATPase of the canonical bacterial Sec secretion system. SecA2 has a nonredundant function with SecA1, and SecA2 exports a distinct and smaller set of substrates than SecA1. This work reports the crystal structure of SecA2 of Mycobacterium tuberculosis (the first SecA2 structure reported for any organism). Many of the structural features of SecA1 are conserved in the SecA2 structure, including putative contacts with the SecYEG channel. Several structural differences are also identified that could relate to the unique function and selectivity of SecA2. Suppressor mutations of a secA2 mutant map to the surface of SecA2 and help identify functional regions of SecA2 that may promote interactions with SecYEG.


Subject(s)
Adenosine Triphosphatases/chemistry , Bacterial Proteins/chemistry , Mycobacterium tuberculosis/enzymology , Adenosine Triphosphatases/genetics , Adenosine Triphosphatases/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Crystallography, X-Ray , Models, Molecular , Mycobacterium tuberculosis/chemistry , Mycobacterium tuberculosis/genetics , Protein Sorting Signals , SecA Proteins
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