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1.
Nutr Diabetes ; 3: e84, 2013 Aug 26.
Article in English | MEDLINE | ID: mdl-23978818

ABSTRACT

OBJECTIVE: Differences in body fat distribution contribute to the metabolic abnormalities associated with overweight and obesity; however, such differences have not been adequately explored during pregnancy. Our aim was to compare longitudinal trends in maternal abdominal adipose tissue deposition during pregnancy in overweight/obese compared with normal weight women. STUDY DESIGN: Pregnant women, classified as normal weight (body mass index (BMI) <25 kg m(-2); N=61) or overweight/obese (BMI 25 kg m(-2); N=57), were enrolled in a prospective cohort study starting in the first trimester. Maternal subcutaneous (smin) and preperitoneal (pmax) fat were measured by ultrasound at five time points starting between 6 and 10 weeks gestation. The abdominal fat index (AFI), an established marker of visceral adipose tissue, was calculated as the ratio of pmax to smin. The trajectories of smin, pmax, cumulative fat index (smin plus pmax) and the AFI across pregnancy were analyzed using mixed linear models. RESULTS: The rate of maternal weight gain during pregnancy was significantly lower for overweight/obese women compared with their non-overweight counterparts (P<0.05). Accordingly, the rate of change of pmax and smin differed significantly in normal weight compared with overweight/obese women (P=0.0003 and 0.01, respectively). The cumulative fat index did not change across gestation in normal weight women, whereas it decreased for overweight/obese women (P=0.0005). The log AFI increased across pregnancy in both strata, but significantly more rapidly for normal weight compared with overweight/obese women (P=0.06). CONCLUSIONS: Adipose tissue is preferentially deposited in the more metabolically active visceral compartment as pregnancy progresses. However, this process differs in normal weight compared with overweight/obese women and may contribute to metabolic differences between these groups. Our study is a step toward a more refined description of obesity and its consequences during pregnancy.

2.
Indian J Pharm Sci ; 72(1): 145-8, 2010 Jan.
Article in English | MEDLINE | ID: mdl-20582210

ABSTRACT

Alpinia officinarum is a rhizome belonging to the family zingeberaeceae. Hydro alcoholic extract by hot and cold maceration and methanol extract by percolation process Qualitative phytochemical analysis of extract of Alpinia officinarum rhizome showed a majority of the compound including tannins, alkaloids, flavonoids and saponins. Hydroalcoholic extract prepared by hot maceration process was found to contain more phenol and flavonol and it was measured as 50.1 mg/g and 54.02 mg/g, respectively. All the three extracts showed moderate to potent antimicrobial activity against the Bacillus cereus, Staphylococcus aureas, Pseudomonas auroginosa, Escherichia coli. None of the extracts showed antifungal activity against Aspergillus niger and Candida albicans. All the three extracts showed a concentration dependent radical scavenging activity by inhibiting diphenylpicrylhydrazyl free radical at the same time hydroalcoholic extract prepared by hot maceration process showed better reducing and total antioxidant activity.

3.
Indian J Surg ; 72(3): 279-80, 2010 Jun.
Article in English | MEDLINE | ID: mdl-23133270
4.
Placenta ; 30(7): 619-24, 2009 Jul.
Article in English | MEDLINE | ID: mdl-19464055

ABSTRACT

The goal of this analysis was to estimate the influence of variation in uterine artery and umbilical artery resistance indices (RIs) measured across gestation on variation in the risk of preterm delivery (PTD). Analyses were carried out on data collected in a longitudinal study of 523 gravidas. Uterine and umbilical artery RIs were measured on three occasions during pregnancy (16-20 weeks gestation; 21-29 weeks gestation; and 30-36 weeks gestation). Data were analyzed using the Cox proportional hazards regression model. The primary outcome variable was birth prior to 37 weeks gestation. We found that for mothers who delivered preterm the mean uterine artery RI was consistently larger across all gestational ages, while the mean umbilical artery RI decreased significantly more slowly across gestation than for their term counterparts. In analyses pooled by type of delivery, we found that the hazard ratio (HR) for PTD was statistically significant for either uterine artery RI (HR=2.26, 95% CI: 1.65, 3.11) or umbilical artery RI (HR=3.47, 95% CI: 2.43, 4.95) after adjusting for statistically significant covariates. In stratified analyses, the hazard ratio for PTD was also positively associated with an increased uterine or umbilical artery RI in both spontaneous and indicated deliveries. Our data suggest that pregnancies with either a higher uterine or umbilical artery RI across gestation are more likely to be affected by PTD suggesting that disordered placentation resulting in compromised placental blood flow may be an important pathway to PTD.


Subject(s)
Placental Circulation , Premature Birth/epidemiology , Premature Birth/physiopathology , Umbilical Arteries/physiology , Uterus/blood supply , Adult , Blood Flow Velocity , Female , Gestational Age , Humans , Laser-Doppler Flowmetry , Longitudinal Studies , Multivariate Analysis , Pregnancy , Premature Birth/diagnostic imaging , Proportional Hazards Models , Prospective Studies , Risk Factors , Ultrasonography , Umbilical Arteries/diagnostic imaging , Uterus/diagnostic imaging
5.
Proc Natl Acad Sci U S A ; 98(22): 12456-61, 2001 Oct 23.
Article in English | MEDLINE | ID: mdl-11675490

ABSTRACT

We present a model describing how Mg(2+) binds and stabilizes specific RNA structures. In this model, RNA stabilization arises from two energetically distinct modes of Mg(2+) binding: diffuse- and site-binding. Diffusely bound Mg(2+) are electrostatically attracted to the strong anionic field around the RNA and are accurately described by the Poisson-Boltzmann equation as an ensemble distributed according to the electrostatic potentials around the nucleic acid. Site-bound Mg(2+) are strongly attracted to specifically arranged electronegative ligands that desolvate the ion and the RNA binding site. Thus, site-binding is a competition between the strong coulombic attraction and the large cost of desolvating the ion and its binding pocket. By using this framework, we analyze three systems where a single site-bound Mg(2+) may be important for stability: the P5 helix and the P5b stem loop from the P4-P6 domain of the Tetrahymena thermophila group I intron and a 58-nt fragment of the Escherichia coli 23S ribosomal RNA. Diffusely bound Mg(2+) play a dominant role in stabilizing these RNA structures. These ions stabilize the folded structures, in part, by accumulating in regions of high negative electrostatic potential. These regions of Mg(2+) localization correspond to ions that are observed in the x-ray crystallographic and NMR structures of the RNA. In contrast, the contribution of site-binding to RNA stability is often quite small because of the large desolvation penalty. However, in special cases, site-binding of partially dehydrated Mg(2+) to locations with extraordinarily high electrostatic potential can also help stabilize folded RNA structures.


Subject(s)
Magnesium/metabolism , RNA/metabolism , Thermodynamics , RNA/chemistry , RNA, Ribosomal, 23S/chemistry , RNA, Ribosomal, 23S/metabolism
6.
Catheter Cardiovasc Interv ; 52(1): 40-4, 2001 Jan.
Article in English | MEDLINE | ID: mdl-11146520

ABSTRACT

Saphenous vein graft (SVG) intervention has been associated with an increased incidence of distal embolization. Long lesions and lesions associated with thrombus are particularly at increased risk. This study was performed to determine whether abciximab may decrease this risk in high risk SVG angioplasty. From June 1994 to June 1998, 84 patients with at least one high risk factor, i.e., lesion length >20 mm or angiographic evidence of thrombus, underwent Transluminal extraction atherectomy (TEC) procedure followed by balloon dilatation or stenting. Of these 84 patients, 37 who had procedure after September 1995 underwent TEC with abciximab (Abciximab Group) and 47 who had their procedure before that date had TEC without abciximab thereby serving as historic control (Non-Abciximab Group). All patients had normal pre-procedure CK and CK-MB. Total creatine kinase (CK) and CK-MB were measured every 8 hr post-procedure for 24 hr. Baseline demographics, angiographic characteristics, incidence of LV dysfunction and triple vessel disease were similar between the two groups. Graft age was similar between two groups (122 +/- 70 vs. 117 +/- 54 months). Graft diameter, pre and post-procedure percent stenoses were not different between the two groups. Stents were used in 65% in the Abciximab group and 45% in Non-Abciximab group (P = 0. 14). There was no in-hospital repeat PTCA, urgent bypass surgery, or cardiac death. There was no difference between the two groups in regards to the incidence of any elevation of total CK (27% vs. 21. 3%) or CK-MB (54% vs. 51%). When used in conjunction with TEC in treating high risk vein graft lesions, abciximab did not reduce post procedure CK-MB elevation in this patient population.


Subject(s)
Angioplasty, Balloon, Coronary/methods , Antibodies, Monoclonal/administration & dosage , Atherectomy/methods , Coronary Artery Bypass/adverse effects , Creatine Kinase/drug effects , Graft Occlusion, Vascular/drug therapy , Immunoglobulin Fab Fragments/administration & dosage , Isoenzymes/drug effects , Platelet Aggregation Inhibitors/administration & dosage , Saphenous Vein/transplantation , Abciximab , Aged , Chi-Square Distribution , Coronary Angiography , Coronary Artery Bypass/methods , Coronary Disease/surgery , Creatine Kinase/analysis , Creatine Kinase, MB Form , Female , Follow-Up Studies , Graft Occlusion, Vascular/diagnostic imaging , Graft Occlusion, Vascular/therapy , Graft Rejection , Humans , Isoenzymes/analysis , Middle Aged , Probability , Risk Assessment , Treatment Outcome
7.
Echocardiography ; 17(1): 53-60, 2000 Jan.
Article in English | MEDLINE | ID: mdl-10978961

ABSTRACT

We describe the usefulness of transesophageal three-dimensional echocardiography in the evaluation of anomalously arising coronary arteries in four adult patients recently studied by us.


Subject(s)
Coronary Vessel Anomalies/diagnostic imaging , Echocardiography, Three-Dimensional/methods , Echocardiography, Transesophageal , Adult , Aged , Coronary Angiography , Coronary Vessel Anomalies/physiopathology , Diagnosis, Differential , Female , Humans , Male , Middle Aged
8.
J Neuroimaging ; 10(3): 177-80, 2000 Jul.
Article in English | MEDLINE | ID: mdl-10918746

ABSTRACT

Severe thrombosis of the superior sagittal, transverse, and straight sinuses developed in a 53-year-old woman. This resulted in extensive multifocal hemorrhagic venous infarction and severe intracranial hypertension refractory to intensive management. Endovascular therapy using a rheolytic catheter device in combination with a small amount of fibrinolytic agent led to rapid normalization of the intracranial pressure, allowing optimization of the cerebral perfusion pressures and was followed by steady, albeit protracted, clinical improvement. The patient not only survived but also left the hospital with minimal neurologic deficit. The rheolytic catheter endovascular treatment is, in the opinion of the authors, the treatment of choice for patients with life-threatening cerebral sinus thrombosis.


Subject(s)
Angioplasty, Balloon/instrumentation , Emergencies , Sagittal Sinus Thrombosis/therapy , Sinus Thrombosis, Intracranial/therapy , Thrombolytic Therapy/instrumentation , Urokinase-Type Plasminogen Activator/administration & dosage , Diagnostic Imaging , Equipment Design , Female , Humans , Middle Aged , Retreatment , Sagittal Sinus Thrombosis/diagnosis , Sagittal Sinus Thrombosis/etiology , Sinus Thrombosis, Intracranial/diagnosis , Sinus Thrombosis, Intracranial/etiology
9.
J Mol Biol ; 299(3): 813-25, 2000 Jun 09.
Article in English | MEDLINE | ID: mdl-10835286

ABSTRACT

Our current understanding of Mg(2+) binding to RNA, in both thermodynamic and structural terms, is largely based on classical studies of transfer RNAs. Based on these studies, it is clear that magnesium ions are crucial for stabilizing the folded structure of tRNA. We present here a rigorous theoretical model based on the nonlinear Poisson-Boltzmann (NLPB) equation for understanding Mg(2+) binding to yeast tRNA(Phe). We use this model to interpret a variety of experimental Mg(2+) binding data. In particular, we find that the NLPB equation provides a remarkably accurate description of both the overall stoichiometry and the free energy of Mg(2+) binding to yeast tRNA(Phe) without any fitted parameters. In addition, the model accurately describes the interaction of Mg(2+) with localized regions of the RNA as determined by the pK(a) shift of differently bound fluorophores. In each case, we find that the model also reproduces the univalent salt-dependence and the anticooperativity of Mg(2+) binding. Our results lead us to a thermodynamic description of Mg(2+) binding to yeast tRNA(Phe) based on the NLPB equation. In this model, Mg(2+) binding is simply explained by an ensemble of ions distributed according to a Boltzmann weighted average of the mean electrostatic potential around the RNA. It appears that the entire ensemble of electrostatically bound ions superficially mimics a few strongly coordinated ions. In this regard, we find that Mg(2+) stabilizes the tertiary structure of yeast tRNA(Phe) in part by accumulating in regions of high negative electrostatic potential. These regions of Mg(2+) localization correspond to bound ions that are observed in the X-ray crystallographic structures of yeast tRNA(Phe). Based on our results and the available thermodynamic data, there is no evidence that specifically coordinated Mg ions have a significant role in stabilizing the native tertiary structure of yeast tRNA(Phe) in solution.


Subject(s)
Magnesium/metabolism , Nucleic Acid Conformation , RNA Stability , RNA, Transfer, Phe/chemistry , RNA, Transfer, Phe/metabolism , Yeasts/genetics , Binding Sites , Crystallography, X-Ray , Fluorescent Dyes/metabolism , Ions , Models, Molecular , Poisson Distribution , RNA, Fungal/chemistry , RNA, Fungal/genetics , RNA, Fungal/metabolism , RNA, Transfer, Phe/genetics , Salts/metabolism , Solutions , Static Electricity , Thermodynamics
10.
AJNR Am J Neuroradiol ; 21(5): 971-3, 2000 May.
Article in English | MEDLINE | ID: mdl-10815680

ABSTRACT

Percutaneous balloon angioplasty has been found to be useful for the treatment of intracranial atherosclerotic arterial stenosis. Nonetheless, an ongoing risk of this procedure is arterial dissection, which increases the hazards of acute closure, stroke, and restenosis. Stenting of the intracranial vasculature recently has been shown to be feasible in a variety of circumstances. To our knowledge, however, stenting of the middle cerebral artery has not been possible until now primarily because of difficulty with tracking stents across the carotid siphon. We describe the successful treatment of a symptomatic middle cerebral artery stenosis achieved using a balloon-expandable flexible coronary stent.


Subject(s)
Angioplasty, Balloon/instrumentation , Intracranial Arteriosclerosis/therapy , Middle Cerebral Artery , Stents , Cerebral Angiography , Equipment Design , Humans , Intracranial Arteriosclerosis/diagnostic imaging , Male , Middle Aged , Middle Cerebral Artery/diagnostic imaging
11.
N Engl J Med ; 342(21): 1573-80, 2000 May 25.
Article in English | MEDLINE | ID: mdl-10824077

ABSTRACT

BACKGROUND: There is an inverse relation between mortality from cardiovascular causes and the number of elective cardiac procedures (coronary angioplasty, stenting, or coronary bypass surgery) performed by individual practitioners or hospitals. However, it is not known whether patients with acute myocardial infarction fare better at centers where more patients undergo primary angioplasty or thrombolytic therapy than at centers with lower volumes. METHODS: We analyzed data from the National Registry of Myocardial Infarction to determine the relation between the number of patients receiving reperfusion therapy (primary angioplasty or thrombolytic therapy) and subsequent in-hospital mortality. A total of 450 hospitals were divided into quartiles according to the volume of primary angioplasty. Multiple logistic-regression models were used to determine whether the volume of primary angioplasty procedures was an independent predictor of in-hospital mortality among patients undergoing this procedure. Similar analyses were performed for patients receiving thrombolytic therapy at 516 hospitals. RESULTS: In-hospital mortality was 28 percent lower among patients who underwent primary angioplasty at hospitals with the highest volume than among those who underwent angioplasty at hospitals with the lowest volume (adjusted relative risk, 0.72; 95 percent confidence interval, 0.60 to 0.87; P<0.001). This lower rate, which represented 2.0 fewer deaths per 100 patients treated, was independent of the total volume of patients with myocardial infarction at each hospital, year of admission, and use or nonuse of adjunctive pharmacologic therapies. There was no significant relation between the volume of thrombolytic interventions and in-hospital mortality among patients who received thrombolytic therapy (7.0 percent for patients in the highest-volume hospitals vs. 6.9 percent for those in the lowest-volume hospitals, P=0.36). CONCLUSIONS: Among hospitals in the United States that have full interventional capabilities, a higher volume of angioplasty procedures is associated with a lower mortality rate among patients undergoing primary angioplasty, but there is no association between volume and mortality for thrombolytic therapy.


Subject(s)
Angioplasty, Balloon, Coronary/statistics & numerical data , Myocardial Infarction/mortality , Thrombolytic Therapy/statistics & numerical data , Angioplasty, Balloon, Coronary/mortality , Hospital Mortality , Humans , Logistic Models , Myocardial Infarction/drug therapy , Myocardial Infarction/therapy , Registries , Risk , Thrombolytic Therapy/mortality , Time Factors , United States/epidemiology
12.
Stroke ; 31(1): 95-9, 2000 Jan.
Article in English | MEDLINE | ID: mdl-10625722

ABSTRACT

BACKGROUND AND PURPOSE: Percutaneous angioplasty of the intracranial arteries still carries the risk of dissection, with acute closure and embolization. Stenting has been shown to improve the safety and durability of angioplasty in every circulatory bed in which it has been applied. However, stenting of the intracranial arteries has been limited by the availability of stents that can be reliably deployed intracranially. METHODS: Twelve patients underwent elective stenting of the basilar artery after episodes of vertebrobasilar ischemia. In all patients, either medical therapy had failed or the patient had a contraindication for long-term anticoagulation. Information from independent neurological examinations, quantitative angiography, and clinical follow-up was collected. Differences between pretreatment and posttreatment degree of stenoses were subjected to 1-way ANOVA for repeated measures. RESULTS: There were 10 men and 2 women, all white, aged 40 to 82 years (mean age, 62.6 years). Stent placement was successful in all patients, leading to statistically significant changes in the degree of stenosis, from 71. 4% (range, 53% to 90%) to 10.3% (range, 0% to 36%) (P<0.0001). There were no deaths, stent thromboses, perforations, ruptures, or myocardial infarctions. Clinical follow-up was available for 0.5 to 16 months (mean, 5.9 months). One patient had nonspecific symptoms, and another had a transient ischemic attack. All other patients remained asymptomatic. CONCLUSIONS: Elective stenting of the basilar artery is feasible, with minimal risk to the patient. Its impact on long-term stroke prevention and its durability are unknown and will require further study.


Subject(s)
Angioplasty, Balloon , Basilar Artery/pathology , Stents , Vertebrobasilar Insufficiency/therapy , Adult , Aged , Aged, 80 and over , Angioplasty, Balloon/methods , Female , Humans , Male , Middle Aged , Treatment Outcome
13.
J Mol Biol ; 294(5): 1135-47, 1999 Dec 17.
Article in English | MEDLINE | ID: mdl-10600372

ABSTRACT

Magnesium ions play a crucial role in the structural integrity and biological activity of nucleic acids. Experimental thermodynamic descriptions of Mg(2+) interactions with nucleic acids in solution have generally relied on the analyses of binding polynomials to estimate the energetic contributions of diffuse and site-bound ions. However, since ion binding is dominated by long-range electrostatic forces, such models provide only a phenomenological description of the experimental Mg(2+) binding data and provide little insight into the actual mechanism of the binding equilibria. Here, we present a rigorous theoretical framework based on the non-linear Poisson-Boltzmann (NLPB) equation for understanding diffuse ion interactions that can be used to interpret experimental Mg(2+) binding isotherms. As intuitively expected, in the NLPB model binding is simply the total accumulation of the ion around the nucleic acid. Comparing the experimental data to the calculated curves shows that the NLPB equation provides a remarkably accurate description of Mg(2+) binding to linear polynucleotides like DNA and poly(A x U) without any fitted parameters. In particular, the NLPB model explains two general features of magnesium binding; the strong dependence on univalent salt concentration, and its substantial anticooperativity. Each of these effects can be explained by changes in the Mg(2+) distribution around the polyion under different solution conditions. In order to more fully understand these different aspects of magnesium binding, the free energy of Mg(2+) binding, DeltaGMg, is calculated and partitioned into several salt-dependent contributions: the change in the electrostatic interaction free energy of the charges, DeltaDeltaGE.D (including Mg(2+)-phosphate, Mg(2+)-Mg(2+), Mg(2+)-Na(+), Na(+)-Na(+), Na(+)-phosphate interactions, and similar contributions for Cl(-)) and the cratic free energies of (re)organizing the MgCl2 and NaCl atmospheres, DeltaG(Mg)org and DeltaDeltaG(Na)org, respectively. For the systems studied here, DeltaGMg is strongly influenced by entropic free energy changes in the distributions of both NaCl and MgCl2, DeltaG(Mg)org and DeltaDeltaG(Na)org. From this analysis, we also raise the possibility that coions added with the magnesium salt might play an important role in the overall stability of nucleic acids under some conditions.


Subject(s)
Magnesium/metabolism , Nucleic Acids/metabolism , Temperature , Binding, Competitive , Chlorides/metabolism , DNA/metabolism , Models, Theoretical , Osmolar Concentration , Phosphates/metabolism , Poisson Distribution , Polynucleotides/metabolism , Reproducibility of Results , Sodium/metabolism , Solutions , Static Electricity , Thermodynamics
14.
Nat Struct Biol ; 5(11): 927-30, 1998 Nov.
Article in English | MEDLINE | ID: mdl-9808031
15.
Biophys J ; 75(5): 2262-73, 1998 Nov.
Article in English | MEDLINE | ID: mdl-9788922

ABSTRACT

A model based on the nonlinear Poisson-Boltzmann (NLPB) equation is used to study the electrostatic contribution to the binding free energy of the lambdacI repressor to its operator DNA. In particular, we use the Poisson-Boltzmann model to calculate the pKa shift of individual ionizable amino acids upon binding. We find that three residues on each monomer, Glu34, Glu83, and the amino terminus, have significant changes in their pKa and titrate between pH 4 and 9. This information is then used to calculate the pH dependence of the binding free energy. We find that the calculated pH dependence of binding accurately reproduces the available experimental data over a range of physiological pH values. The NLPB equation is then used to develop an overall picture of the electrostatics of the lambdacI repressor-operator interaction. We find that long-range Coulombic forces associated with the highly charged nucleic acid provide a strong driving force for the interaction of the protein with the DNA. These favorable electrostatic interactions are opposed, however, by unfavorable changes in the solvation of both the protein and the DNA upon binding. Specifically, the formation of a protein-DNA complex removes both charged and polar groups at the binding interface from solvent while it displaces salt from around the nucleic acid. As a result, the electrostatic contribution to the lambdacI repressor-operator interaction opposes binding by approximately 73 kcal/mol at physiological salt concentrations and neutral pH. A variety of entropic terms also oppose binding. The major force driving the binding process appears to be release of interfacial water from the protein and DNA surfaces upon complexation and, possibly, enhanced packing interactions between the protein and DNA in the interface. When the various nonelectrostatic terms are described with simple models that have been applied previously to other binding processes, a general picture of protein/DNA association emerges in which binding is driven by the nonpolar interactions, whereas specificity results from electrostatic interactions that weaken binding but are necessary components of any protein/DNA complex.


Subject(s)
DNA, Viral/metabolism , DNA-Binding Proteins/metabolism , Repressor Proteins/metabolism , Hydrogen-Ion Concentration , Models, Biological , Operator Regions, Genetic/genetics , Static Electricity , Thermodynamics , Viral Proteins , Viral Regulatory and Accessory Proteins
16.
Biopolymers ; 48(2-3): 113-35, 1998.
Article in English | MEDLINE | ID: mdl-10333741

ABSTRACT

Divalent cations, like magnesium, are crucial for the structural integrity and biological activity of RNA. In this article, we present a picture of how magnesium stabilizes a particular folded form of RNA. The overall stabilization of RNA by Mg2+ is given by the free energy of transferring RNA from a reference univalent salt solution to a mixed salt solution. This term has favorable energetic contributions from two distinct modes of binding: diffuse binding and site binding. In diffuse binding, fully hydrated Mg ions interact with the RNA via nonspecific long-range electrostatic interactions. In site binding, dehydrated Mg2+ interacts with anionic ligands specifically arranged by the RNA fold to act as coordinating ligands for the mental ion. Each of these modes has a strong coulombic contribution to binding; however, site binding is also characterized by substantial changes in ion solvation and other nonelectrostatic contributions. We will show how these energetic differences can be exploited to experimentally distinguish between these two classes of ions using analyses of binding polynomials. We survey a number of specific systems in which Mg(2+)-RNA interactions have been studied. In well-characterized systems such as certain tRNAs and some rRNA fragments these studies show that site-bound ions can play an important role in RNA stability. However, the crucial role of diffusely bound ions is also evident. We emphasize that diffuse binding can only be described rigorously by a model that accounts for long-range electrostatic forces. To fully understand the role of magnesium ions in RNA stability, theoretical models describing electrostatic forces in systems with complicated structures must be developed.


Subject(s)
Cations, Divalent , Magnesium/physiology , Nucleic Acid Conformation , RNA/chemistry
17.
Clin Cardiol ; 20(11): 915-22, 1997 Nov.
Article in English | MEDLINE | ID: mdl-9383584

ABSTRACT

Substantial evidence of postangioplasty vasoconstriction is available, both at the dilated site and distal to balloon injury, demonstrating its frequent occurrence. It is likely that even mild or moderate vasoconstriction at the site of balloon injury may create flow turbulence, promoting platelet aggregation and contributing to thrombotic vessel closure. The regulation of arterial smooth muscle tone is a complex process and should be distinguished from elastic recoil, which occurs at the site of balloon injury due to passive elastic properties of the artery, generally immediately after balloon deflation. The contribution of a variety of messengers generated by humoral, neurogenic, myogenic, and endothelium-derived factors in this regulatory process has been implicated. The possible mechanisms of post-percutaneous transluminal coronary angioplasty vasoconstriction at the dilated site (local) and in segments of coronary artery beyond the dilated site (distal) are reviewed in this article.


Subject(s)
Angioplasty, Balloon, Coronary , Coronary Disease/therapy , Coronary Vessels/physiology , Vasoconstriction , Animals , Constriction, Pathologic , Coronary Disease/pathology , Coronary Disease/physiopathology , Coronary Vessels/pathology , Endothelium, Vascular/physiology , Homeostasis , Humans , Nitric Oxide/physiology
18.
Biochemistry ; 35(4): 1115-24, 1996 Jan 30.
Article in English | MEDLINE | ID: mdl-8573566

ABSTRACT

In this paper, the finite difference nonlinear Poisson-Boltzmann (NLPB) equation is used to calculate the electrostatic contribution to the B to Z transition of DNA using detailed molecular structures of each DNA form. The electrostatic transition free energy is described as a balance between the change in intramolecular Coulombic interactions and charge-dependent interactions between the DNA and the solvent. As in many prior studies, we find that the larger electrostatic repulsions among the more closely spaced Z-DNA phosphates destabilize this form compared to B-DNA in the absence of solvent. However, as a result of the more compact three-dimensional geometry of Z-DNA, both water and salt are found to strongly stabilize this conformation to the extent that the total electrostatic free energy favors the B to Z transition in aqueous solution. Water acts not only by screening the inter-phosphate repulsions but also by solvating both charged and polar groups on Z-DNA more favorably than B-DNA. In addition, Z-DNA is stabilized by a substantially higher concentration of nearby counterions than B-DNA. The relative stabilization of Z-DNA by salt increases with increasing bulk salt concentration, leading to the high-salt B to Z transition. We find that the salt dependence of the B to Z transition free energy calculated with the NLPB equation agrees reasonably well with experimental results. Since electrostatic interactions are found to favor the Z-form, nonelectrostatic forces must be responsible for the relative stability of B-DNA in solution. An analysis of these forces suggests that the conformational entropy may play an important role.


Subject(s)
Computer Simulation , DNA/chemistry , Models, Theoretical , Nucleic Acid Conformation , DNA/drug effects , Electricity , Models, Chemical , Models, Molecular , Salts/pharmacology
19.
Cathet Cardiovasc Diagn ; 35(2): 127-30, 1995 Jun.
Article in English | MEDLINE | ID: mdl-7656304

ABSTRACT

The angiographic incidence of intramyocardial bridging (MB) is 0.7-4.5% [Angelini et al.: Prog Cardiovasc Dis 25:75-88, 1983]. Morphological and physiological patterns of MB have recently been described, observing coronary flow velocity patterns, intravascular ultrasound, and angiography [Flynn et al.: Cathet Cardiovasc Diagn 32:36-39, 1994; Ge et al.: Circ Res 89:1725-1732, 1994]. We describe a reversal of the normal flow velocity characteristics within a MB, due to a hemodynamically significant stenosis in the proximal left anterior descending artery (LAD). After successful percutaneous transluminal coronary angioplasty (PTCA) of the proximal LAD stenosis, there was normalization of the flow velocity pattern within the MB and the appearance of a spike and dome pattern distal to the MB.


Subject(s)
Angioplasty, Balloon, Coronary , Coronary Circulation , Coronary Disease/physiopathology , Coronary Disease/therapy , Blood Flow Velocity , Cardiac Catheterization , Coronary Disease/diagnosis , Coronary Vessels/pathology , Coronary Vessels/physiology , Electrocardiography , Hemodynamics/physiology , Humans , Male , Middle Aged , Myocardium/pathology
20.
Proc Natl Acad Sci U S A ; 92(10): 4691-5, 1995 May 09.
Article in English | MEDLINE | ID: mdl-7753866

ABSTRACT

A model based on the nonlinear Poisson-Boltzmann equation is used to study the electrostatic contribution to the binding free energy of a simple intercalating ligand, 3,8-diamino-6-phenylphenanthridine, to DNA. We find that the nonlinear Poisson-Boltzmann model accurately describes both the absolute magnitude of the pKa shift of 3,8-diamino-6-phenylphenanthridine observed upon intercalation and its variation with bulk salt concentration. Since the pKa shift is directly related to the total electrostatic binding free energy of the charged and neutral forms of the ligand, the accuracy of the calculations implies that the electrostatic contributions to binding are accurately predicted as well. Based on our results, we have developed a general physical description of the electrostatic contribution to ligand-DNA binding in which the electrostatic binding free energy is described as a balance between the coulombic attraction of a ligand to DNA and the disruption of solvent upon binding. Long-range coulombic forces associated with highly charged nucleic acids provide a strong driving force for the interaction of cationic ligands with DNA. These favorable electrostatic interactions are, however, largely compensated for by unfavorable changes in the solvation of both the ligand and the DNA upon binding. The formation of a ligand-DNA complex removes both charged and polar groups at the binding interface from pure solvent while it displaces salt from around the nucleic acid. As a result, the total electrostatic binding free energy is quite small. Consequently, nonpolar interactions, such as tight packing and hydrophobic forces, must play a significant role in ligand-DNA stability.


Subject(s)
DNA/chemistry , DNA/metabolism , Ligands , Electrochemistry , Mathematics , Models, Molecular , Models, Theoretical , Thermodynamics
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